Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL4G22020 Arabidopsis lyrata HOM05D006101 ORTHO05D007422 2.4e-251 871.7 442 100.0
AT2G28130 Arabidopsis thaliana HOM05D006101 ORTHO05D007422 1.9e-227 792.3 459 89.1
Carub.0004s0893 Capsella rubella HOM05D006101 ORTHO05D007422 2.0e-213 745.7 458 83.0
Sp4g10940 Schrenkiella parvula HOM05D006101 ORTHO05D007422 2.1e-199 699.1 455 78.5
BcaB02g10150 Brassica carinata HOM05D006101 ORTHO05D007422 5.4e-195 684.5 458 77.5
BcaC02g10947 Brassica carinata HOM05D006101 ORTHO05D007422 1.2e-194 683.3 458 76.9
CARHR120970 Cardamine hirsuta HOM05D006101 ORTHO05D007422 8.7e-193 677.2 459 77.1
C04p23380 Brassica napus HOM05D006101 ORTHO05D007422 4.5e-189 664.8 458 75.8
BolC4t23840H Brassica oleracea HOM05D006101 ORTHO05D007422 2.9e-188 662.1 458 75.5
A07p18660 Brassica napus HOM05D006101 ORTHO05D007422 3.9e-185 651.7 470 73.0
Aa31LG5G8010 Aethionema arabicum HOM05D006101 ORTHO05D007422 2.1e-183 646.0 457 73.1
BraA07t29579Z Brassica rapa HOM05D006101 ORTHO05D007422 9.0e-182 640.6 459 73.6
Thhalv10016576m.g Eutrema salsugineum HOM05D006101 ORTHO05D007422 6.5e-180 634.4 469 71.6
THA.LOC104800579 Tarenaya hassleriana HOM05D006101 ORTHO05D007422 1.1e-171 607.1 458 65.7
GSVIVG01031479001 Vitis vinifera HOM05D006101 ORTHO05D007422 5.4e-134 481.9 454 53.3
TAR636G3121 Trochodendron aralioides HOM05D006101 ORTHO05D007422 9.1e-134 481.1 468 54.7
Atru.chr3.3528 Acer truncatum HOM05D006101 ORTHO05D007422 4.2e-131 472.2 451 53.0
ClCG03G002470 Citrullus lanatus HOM05D006101 ORTHO05D007422 1.6e-130 470.3 452 51.3
Dinv16214 Davidia involucrata HOM05D006101 ORTHO05D007422 3.6e-130 469.2 461 52.7
CiPaw.13G123600 Carya illinoinensis HOM05D006101 ORTHO05D007422 4.7e-130 468.8 451 52.8
Thecc.09G350300 Theobroma cacao HOM05D006101 ORTHO05D007422 4.7e-130 468.8 459 52.9
Manes.04G013700 Manihot esculenta HOM05D006101 ORTHO05D007422 1.4e-129 467.2 459 50.8
TWI75G1238 Tripterygium wilfordii HOM05D006101 ORTHO05D007422 3.0e-129 466.1 451 52.8
QL01p015279 Quercus lobata HOM05D006101 ORTHO05D007422 8.9e-129 464.5 453 52.8
Cfa010291 Carpinus fangiana HOM05D006101 ORTHO05D007422 1.2e-128 464.2 452 53.3
Prupe.6G111800 Prunus persica HOM05D006101 ORTHO05D007422 1.2e-128 464.2 456 51.5
CSS0020443 Camellia sinensis var. sinensis HOM05D006101 ORTHO05D007422 4.9e-127 458.8 460 52.8
Sed0008610 Sechium edule HOM05D006101 ORTHO05D007422 6.3e-127 458.4 449 51.0
MD11G1147300 Malus domestica HOM05D006101 ORTHO05D007422 8.3e-127 458.0 450 51.8
CsaV3_1G013150 Cucumis sativus L. HOM05D006101 ORTHO05D007422 3.2e-126 456.1 452 50.7
Potri.009G006200 Populus trichocarpa HOM05D006101 ORTHO05D007422 1.2e-122 444.1 456 50.7
Duzib150G0708 Durio zibethinus HOM05D006101 ORTHO05D007422 4.7e-122 442.2 459 51.0
Haze_23705 Corylus avellana HOM05D006101 ORTHO05D007422 8.0e-122 441.4 452 52.2
RcHm_v2.0_Chr5g0056961 Rosa chinensis HOM05D006101 ORTHO05D007422 7.5e-120 434.9 456 50.2
Hma1.2p1_0051F.1_g029390 Hydrangea macrophylla HOM05D006101 ORTHO05D007422 2.2e-119 433.3 439 51.7
Gohir.A03G029500 Gossypium hirsutum HOM05D006101 ORTHO05D007422 6.4e-119 431.8 461 49.2
Actinidia03696 Actinidia chinensis HOM05D006101 ORTHO05D007422 1.9e-118 430.3 463 50.8
COL.COLO4_11107 Corchorus olitorius HOM05D006101 ORTHO05D007422 1.9e-118 430.3 459 50.8
CAN.G546.34 Capsicum annuum HOM05D006101 ORTHO05D007422 4.1e-118 429.1 462 50.0
Gohir.D03G139000 Gossypium hirsutum HOM05D006101 ORTHO05D007422 7.0e-118 428.3 461 49.0
PGSC0003DMG400000413 Solanum tuberosum HOM05D006101 ORTHO05D007422 1.6e-117 427.2 456 50.4
FvH4_3g30770 Fragaria vesca HOM05D006101 ORTHO05D007422 2.0e-117 426.8 455 50.1
Cc01_g10370 Coffea canephora HOM05D006101 ORTHO05D007422 4.6e-117 425.6 466 48.1
Solyc11g066340.2 Solanum lycopersicum HOM05D006101 ORTHO05D007422 6.0e-117 425.2 457 49.5
Gorai.003G145800 Gossypium raimondii HOM05D006101 ORTHO05D007422 1.3e-116 424.1 461 48.8
Sopen11g026080 Solanum pennellii HOM05D006101 ORTHO05D007422 3.0e-116 422.9 457 49.2
FAN11G1700 Fragaria x ananassa HOM05D002446 ORTHO05D007422 3.6e-114 416.0 457 49.5
MELO3C004994.2 Cucumis melo HOM05D006101 ORTHO05D007422 4.7e-114 415.6 498 45.2
CSS0026133 Camellia sinensis var. sinensis HOM05D006101 ORTHO05D007422 1.4e-113 414.1 410 52.4
FAN21G1086 Fragaria x ananassa HOM05D006101 ORTHO05D007422 3.1e-113 412.9 453 49.7
FAN16G0923 Fragaria x ananassa HOM05D006101 ORTHO05D007422 4.0e-113 412.5 453 48.6
Lsat_1_v5_gn_6_44300 Lactuca sativa HOM05D006101 ORTHO05D007422 4.0e-113 412.5 453 47.0
Eucgr.B03934 Eucalyptus grandis HOM05D006101 ORTHO05D007422 5.2e-113 412.1 448 50.7
Phvul.011G085500 Phaseolus vulgaris HOM05D006101 ORTHO05D007422 8.9e-113 411.4 452 46.5
FAN25G1259 Fragaria x ananassa HOM05D006101 ORTHO05D007422 1.3e-111 407.5 457 49.0
Lj2C1009G5 Lonicera japonica HOM05D006101 ORTHO05D007422 1.3e-111 407.5 499 45.3
Ciclev10028403m.g Citrus clementina HOM05D006101 ORTHO05D007422 6.4e-111 405.2 457 46.2
Lalb_Chr19g0136961 Lupinus albus HOM05D006101 ORTHO05D007422 6.4e-111 405.2 454 46.5
Migut.D02287 Erythranthe guttata HOM05D006101 ORTHO05D007422 1.4e-110 404.1 460 46.7
MSTRG.21091 Avicennia marina HOM05D006101 ORTHO05D007422 4.1e-110 402.5 457 47.7
Aqoxy1G01111 Aquilegia oxysepala HOM05D006101 ORTHO05D007422 5.4e-110 402.1 463 46.2
HanXRQChr13g0396251 Helianthus annuus HOM05D006101 ORTHO05D007422 1.2e-109 401.0 454 46.5
PGR102G2892 Punica granatum HOM05D006101 ORTHO05D007422 1.2e-109 401.0 450 47.3
Nitab4.5_0000329g0130 Nicotiana tabacum HOM05D006101 ORTHO05D007422 3.5e-109 399.4 446 47.3
CANSAT56G2622 Cannabis sativa HOM05D006101 ORTHO05D007422 7.8e-109 398.3 441 48.1
Peaxi162Scf00086g01114 Petunia axillaris HOM05D006101 ORTHO05D007422 2.3e-108 396.7 444 47.7
Lj3g0002990 Lotus japonicus HOM05D006101 ORTHO05D007422 8.6e-108 394.8 453 45.7
Ca_30122_v3 Cicer arietinum L. HOM05D006101 ORTHO05D007422 1.5e-107 394.0 450 46.4
Glyma.11G193400 Glycine max HOM05D006101 ORTHO05D007422 1.6e-106 390.6 453 44.8
VMungo1127G1509 Vigna mungo HOM05D006101 ORTHO05D007422 3.6e-106 389.4 455 44.8
Ca_02469_v3 Cicer arietinum L. HOM05D006101 ORTHO05D007422 8.3e-103 378.3 451 45.9
Medtr4g057493 Medicago truncatula HOM05D006101 ORTHO05D007422 2.4e-102 376.7 452 44.7
Psat0s1387g0080 Pisum sativum HOM05D006101 ORTHO05D007422 2.7e-101 373.2 453 45.5
Rhsim01G0211100 Rhododendron simsii HOM05D006101 ORTHO05D007422 7.8e-101 371.7 461 46.4
SalBow4G3219 Salvia bowleyana HOM05D006101 ORTHO05D007422 3.9e-100 369.4 460 43.5
CDE09G0605 Ceratophyllum demersum HOM05D006101 ORTHO05D007422 8.1e-98 361.7 455 44.0
PSO339G3309 Papaver somniferum HOM05D006101 ORTHO05D007422 8.1e-98 361.7 474 45.1
PSO063G0796 Papaver somniferum HOM05D006101 ORTHO05D007422 6.8e-97 358.6 474 45.1
Oeu007313.2 Olea europaea HOM05D006101 ORTHO05D007422 1.2e-96 357.8 497 41.6
EL10Ac9g22610 Beta vulgaris HOM05D006101 ORTHO05D007422 4.4e-96 355.9 473 42.9
Sabra09G0003500 Salix brachista HOM05D006101 ORTHO05D007422 5.8e-96 355.5 383 49.1
Sc06g0010850 Simmondsia chinensis HOM05D006101 ORTHO05D007422 7.6e-96 355.1 460 44.8
Nn2g13844 Nelumbo nucifera HOM05D006101 ORTHO05D007422 8.4e-95 351.7 405 46.7
SGA_v2.0_scaffold27G11561 Striga asiatica HOM05D006101 ORTHO05D007422 2.4e-94 350.1 462 41.6
ATR0088G017 Amborella trichopoda HOM05D006101 ORTHO05D007422 2.1e-93 347.1 444 43.5
ECA233G2185 Erigeron canadensis HOM05D006101 ORTHO05D007422 1.3e-92 344.4 444 41.9
MBI13_g39328_MAGBIO Magnolia biondii HOM05D006101 ORTHO05D007422 6.6e-92 342.0 554 38.3
vmacro14396 Vaccinium macrocarpon HOM05D006101 ORTHO05D007422 1.1e-89 334.7 447 43.6
Dinv29372 Davidia involucrata HOM05D006101 ORTHO05D007422 2.7e-85 320.1 329 49.2
Os01g0241100 Oryza sativa ssp. japonica HOM05D006101 ORTHO05D007422 1.5e-83 314.3 457 42.2
AUR62029180 Chenopodium quinoa HOM05D006101 ORTHO05D007422 1.6e-82 310.8 456 40.6
HPP92_020176 Vanilla planifolia HOM05D006101 ORTHO05D007422 2.2e-79 300.4 459 40.1
arahy.Tifrunner.gnm1.ann1.P58SHS Arachis hypogaea HOM05D006101 ORTHO05D007422 6.7e-76 288.9 454 35.5
DCAR_018770 Daucus carota HOM05D006101 ORTHO05D007422 1.1e-75 288.1 367 45.5
Nitab4.5_0003880g0040 Nicotiana tabacum HOM05D006101 ORTHO05D007422 3.7e-74 283.1 459 38.8
arahy.Tifrunner.gnm1.ann1.V5BWPF Arachis hypogaea HOM05D006101 ORTHO05D007422 6.2e-74 282.3 448 35.7
Ah.01g014140 Amaranthus hybridus HOM05D006101 ORTHO05D007422 6.9e-73 278.9 467 37.9
arahy.Tifrunner.gnm1.ann1.66BK9V Arachis hypogaea HOM05D006101 ORTHO05D007422 1.7e-71 274.2 428 36.0
Glyma.12G080600 Glycine max HOM05D006101 ORTHO05D007422 2.3e-68 263.8 413 37.3
unitig_747.g21973 Utricularia gibba HOM05D006101 ORTHO05D007422 6.7e-68 262.3 353 41.6
Hund08365 Selenicereus undatus HOM05D006101 ORTHO05D007422 3.4e-64 250.0 457 35.0
AUR62014957 Chenopodium quinoa HOM05D006101 ORTHO05D007422 2.9e-63 246.9 364 37.9
Hma1.2p1_0051F.1_g029400 Hydrangea macrophylla HOM05D006101 ORTHO05D007422 6.9e-57 225.7 219 53.4
Zm00001eb118850 Zea mays HOM05D006101 ORTHO05D007422 1.0e-52 211.8 344 39.0
HanXRQChr04g0111151 Helianthus annuus HOM05D006101 ORTHO05D007422 1.3e-47 194.9 287 39.4
VMungo1215G2511 Vigna mungo HOM05D006101 ORTHO05D007422 1.4e-44 184.9 333 33.6
SHI06228 Sapria himalayana HOM05D006101 ORTHO05D007422 3.6e-37 160.2 198 42.9
Pp3c4_7040 Physcomitrium patens HOM05D006101 ORTHO05D007422 4.0e-36 156.8 457 29.5
arahy.Tifrunner.gnm1.ann1.KM9ELV Arachis hypogaea HOM05D006101 ORTHO05D007422 6.7e-36 156.0 254 33.5
Mapoly0094s0062 Marchantia polymorpha HOM05D006101 ORTHO05D007422 1.2e-27 128.6 379 28.2
SEGI_30921 Sequoiadendron giganteum HOM05D006101 ORTHO05D007422 7.0e-25 119.4 206 31.6
arahy.Tifrunner.gnm1.ann1.PH2QKZ Arachis hypogaea HOM05D006101 ORTHO05D007422 1.7e-23 114.8 251 29.5
SEGI_35146 Sequoiadendron giganteum HOM05D006101 ORTHO05D007422 1.2e-21 108.6 143 41.3
Actinidia20431 Actinidia chinensis HOM05D006101 ORTHO05D007422 2.1e-21 107.8 105 54.3
SHI06230 Sapria himalayana HOM05D006101 ORTHO05D007422 1.4e-20 105.1 141 41.1
TPR.G36765 Trifolium pratense HOM05D006101 ORTHO05D007422 7.0e-17 92.8 83 53.0
arahy.Tifrunner.gnm1.ann1.EU9JMW Arachis hypogaea HOM05D006101 ORTHO05D007422 5.9e-16 89.7 180 32.8
arahy.Tifrunner.gnm1.ann1.88XJ4T Arachis hypogaea HOM05D006101 ORTHO05D007422 1.0e-15 89.0 111 38.7
AagrBONN_evm.TU.Sc2ySwM_228.2481 Anthoceros agrestis HOM05D006101 ORTHO05D007422 5.6e-14 83.2 422 24.6
SMO351G0356 Selaginella moellendorffii HOM05D006101 ORTHO05D007422 9.8e-11 72.4 310 23.5
Glyma.09G075800 Glycine max HOM05D006101 ORTHO05D007422 1.3e-07 62.0 57 52.6


User provided reference genes

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