Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL4G21610 Arabidopsis lyrata HOM05D005728 ORTHO05D005733 3.1e-57 224.9 116 100.0
AT2G28410 Arabidopsis thaliana HOM05D005728 ORTHO05D005733 3.3e-51 204.9 116 89.7
C04p22970 Brassica napus HOM05D005728 ORTHO05D005733 1.1e-43 179.9 116 79.3
BcaB06g28212 Brassica carinata HOM05D005728 ORTHO05D005733 4.3e-43 177.9 116 77.6
CARHR121360 Cardamine hirsuta HOM05D005728 ORTHO05D005733 5.7e-43 177.6 117 78.6
BolC4t23791H Brassica oleracea HOM05D005728 ORTHO05D005733 7.4e-43 177.2 116 78.4
A07p18980 Brassica napus HOM05D005728 ORTHO05D005733 9.7e-43 176.8 116 76.7
BraA07t29603Z Brassica rapa HOM05D005728 ORTHO05D005733 9.7e-43 176.8 116 76.7
Sp4g11230 Schrenkiella parvula HOM05D005728 ORTHO05D005733 1.3e-42 176.4 119 77.3
Carub.0004s0935 Capsella rubella HOM05D005728 ORTHO05D005733 4.8e-42 174.5 117 80.3
Thhalv10017443m.g Eutrema salsugineum HOM05D005728 ORTHO05D005733 6.3e-42 174.1 116 78.4
A04p21550 Brassica napus HOM05D005728 ORTHO05D005733 8.2e-42 173.7 116 75.0
BraA04t17719Z Brassica rapa HOM05D005728 ORTHO05D005733 8.2e-42 173.7 116 75.0
BcaC02g08173 Brassica carinata HOM05D005728 ORTHO05D005733 1.1e-41 173.3 116 75.0
C04p57650 Brassica napus HOM05D005728 ORTHO05D005733 1.1e-41 173.3 116 75.0
BolC4t27283H Brassica oleracea HOM05D005728 ORTHO05D005733 1.4e-41 172.9 116 74.1
Aa31LG5G7800 Aethionema arabicum HOM05D005728 ORTHO05D005733 8.5e-39 163.7 111 73.9
THA.LOC104800607 Tarenaya hassleriana HOM05D005728 ORTHO05D005733 5.7e-35 151.0 103 73.8
Thecc.09G340800 Theobroma cacao HOM05D005728 ORTHO05D005733 1.9e-22 109.4 111 52.3
MD03G1117800 Malus domestica HOM05D005728 ORTHO05D005733 1.6e-21 106.3 115 52.2
Duzib150G0774 Durio zibethinus HOM05D005728 ORTHO05D005733 3.6e-21 105.1 117 53.0
Hma1.2p1_0058F.1_g032530 Hydrangea macrophylla HOM05D005728 ORTHO05D005733 2.6e-19 99.0 115 53.9
Sed0004216 Sechium edule HOM05D005728 ORTHO05D005733 2.6e-19 99.0 115 47.8
Duzib168G0076 Durio zibethinus HOM05D005728 ORTHO05D005733 5.7e-19 97.8 114 49.1
MELO3C020692.2 Cucumis melo HOM05D005728 ORTHO05D005733 7.5e-19 97.4 115 46.1
Manes.04G021300 Manihot esculenta HOM05D005728 ORTHO05D005733 9.7e-19 97.1 116 51.7
CiPaw.13G113100 Carya illinoinensis HOM05D005728 ORTHO05D005733 1.7e-18 96.3 105 54.3
Atru.chr3.3629 Acer truncatum HOM05D005728 ORTHO05D005733 2.8e-18 95.5 117 47.9
Gorai.009G107100 Gossypium raimondii HOM05D005728 ORTHO05D005733 3.7e-18 95.1 117 48.7
Gohir.D05G102800 Gossypium hirsutum HOM05D005728 ORTHO05D005733 8.3e-18 94.0 115 44.3
TAR629G0455 Trochodendron aralioides HOM05D005728 ORTHO05D005733 1.1e-17 93.6 106 48.1
FvH4_3g32270 Fragaria vesca HOM05D005728 ORTHO05D005733 3.1e-17 92.0 115 45.2
FAN11G0683 Fragaria x ananassa HOM05D005728 ORTHO05D005733 3.1e-17 92.0 115 45.2
Gohir.D08G215300 Gossypium hirsutum HOM05D005728 ORTHO05D005733 3.1e-17 92.0 108 53.7
FAN21G3175 Fragaria x ananassa HOM05D005728 ORTHO05D005733 4.1e-17 91.7 115 45.2
FAN25G2087 Fragaria x ananassa HOM05D005728 ORTHO05D005733 4.1e-17 91.7 115 46.1
Glyma.12G172600 Glycine max HOM05D005728 ORTHO05D005733 4.1e-17 91.7 104 48.1
CANSAT54G0421 Cannabis sativa HOM05D005728 ORTHO05D005733 5.3e-17 91.3 122 46.7
FAN16G2914 Fragaria x ananassa HOM05D005728 ORTHO05D005733 5.3e-17 91.3 115 45.2
RcHm_v2.0_Chr5g0059071 Rosa chinensis HOM05D005728 ORTHO05D005733 7.0e-17 90.9 115 46.1
Gohir.A05G103100 Gossypium hirsutum HOM05D005728 ORTHO05D005733 9.1e-17 90.5 115 41.7
Gorai.004G228900 Gossypium raimondii HOM05D005728 ORTHO05D005733 1.2e-16 90.1 109 52.3
TWI31G0058 Tripterygium wilfordii HOM05D005728 ORTHO05D005733 1.2e-16 90.1 117 47.9
Ciclev10029550m.g Citrus clementina HOM05D005728 ORTHO05D005733 1.6e-16 89.7 109 47.7
Duzib170G0319 Durio zibethinus HOM05D005728 ORTHO05D005733 2.0e-16 89.4 116 46.6
Eucgr.B02498 Eucalyptus grandis HOM05D005728 ORTHO05D005733 2.0e-16 89.4 116 48.3
Potri.004G211000 Populus trichocarpa HOM05D005728 ORTHO05D005733 2.0e-16 89.4 111 48.6
Potri.009G013800 Populus trichocarpa HOM05D005728 ORTHO05D005733 2.0e-16 89.4 111 49.5
Lsat_1_v5_gn_1_65300 Lactuca sativa HOM05D005728 ORTHO05D005733 2.7e-16 89.0 109 46.8
QL01p022229 Quercus lobata HOM05D005728 ORTHO05D005733 2.7e-16 89.0 115 45.2
MD11G1136100 Malus domestica HOM05D005728 ORTHO05D005733 3.5e-16 88.6 115 47.0
RhsimUnG0058600 Rhododendron simsii HOM05D005728 ORTHO05D005733 3.5e-16 88.6 102 51.0
Sed0003209 Sechium edule HOM05D005728 ORTHO05D005733 3.5e-16 88.6 117 44.4
HanXRQChr01g0016901 Helianthus annuus HOM05D005728 ORTHO05D005733 5.9e-16 87.8 111 48.6
Haze_23825 Corylus avellana HOM05D005728 ORTHO05D005733 7.7e-16 87.4 115 45.2
Glyma.13G326000 Glycine max HOM05D005728 ORTHO05D005733 7.7e-16 87.4 103 47.6
arahy.Tifrunner.gnm1.ann1.X5FS8C Arachis hypogaea HOM05D005728 ORTHO05D005733 1.0e-15 87.0 106 45.3
Gohir.A08G197900 Gossypium hirsutum HOM05D005728 ORTHO05D005733 1.0e-15 87.0 109 51.4
PGR102G3095 Punica granatum HOM05D005728 ORTHO05D005733 1.0e-15 87.0 118 44.9
TWI79G1513 Tripterygium wilfordii HOM05D005728 ORTHO05D005733 1.0e-15 87.0 117 48.7
Gohir.D03G134400 Gossypium hirsutum HOM05D005728 ORTHO05D005733 1.3e-15 86.7 116 46.6
CsaV3_1G033730 Cucumis sativus L. HOM05D005728 ORTHO05D005733 1.7e-15 86.3 115 42.6
Rhsim01G0216400 Rhododendron simsii HOM05D005728 ORTHO05D005733 1.7e-15 86.3 98 52.0
Cfa011317 Carpinus fangiana HOM05D005728 ORTHO05D005733 2.2e-15 85.9 109 48.6
ECA248G1213 Erigeron canadensis HOM05D005728 ORTHO05D005733 2.2e-15 85.9 114 44.7
Ah.01g002910 Amaranthus hybridus HOM05D005728 ORTHO05D005733 2.9e-15 85.5 116 46.6
Phvul.005G135400 Phaseolus vulgaris HOM05D005728 ORTHO05D005733 2.9e-15 85.5 103 45.6
Rhsim01G0216600 Rhododendron simsii HOM05D005728 ORTHO05D005733 3.8e-15 85.1 108 48.1
Sabra09G0007800 Salix brachista HOM05D005728 ORTHO05D005733 3.8e-15 85.1 104 46.2
TPR.G11537 Trifolium pratense HOM05D005728 ORTHO05D005733 3.8e-15 85.1 107 44.9
CSS0032457 Camellia sinensis var. sinensis HOM05D005728 ORTHO05D005733 8.5e-15 84.0 115 45.2
Ca_01413_v3 Cicer arietinum L. HOM05D005728 ORTHO05D005733 8.5e-15 84.0 107 43.9
VMungo1080G1182 Vigna mungo HOM05D005728 ORTHO05D005733 8.5e-15 84.0 103 43.7
Glyma.12G067500 Glycine max HOM05D005728 ORTHO05D005733 1.1e-14 83.6 109 47.7
Prupe.6G101500 Prunus persica HOM05D005728 ORTHO05D005733 1.5e-14 83.2 110 46.4
Hma1.2p1_2468F.1_g322665 Hydrangea macrophylla HOM05D005728 ORTHO05D005733 1.9e-14 82.8 105 47.6
Sc15g0002200 Simmondsia chinensis HOM05D005728 ORTHO05D005733 4.2e-14 81.6 113 40.7
Hma1.2p1_0055F.1_g031560 Hydrangea macrophylla HOM05D005728 ORTHO05D005733 9.4e-14 80.5 105 46.7
Manes.11G145200 Manihot esculenta HOM05D005728 ORTHO05D005733 9.4e-14 80.5 115 47.0
Nn2g10793 Nelumbo nucifera HOM05D005728 ORTHO05D005733 9.4e-14 80.5 114 43.9
Gohir.A03G033900 Gossypium hirsutum HOM05D005728 ORTHO05D005733 1.2e-13 80.1 83 49.4
Medtr4g059310 Medicago truncatula HOM05D005728 ORTHO05D005733 1.2e-13 80.1 107 45.8
Glyma.11G146600 Glycine max HOM05D005728 ORTHO05D005733 2.7e-13 79.0 106 44.3
Sabra04G0142500 Salix brachista HOM05D005728 ORTHO05D005733 2.7e-13 79.0 109 47.7
TPR.G15560 Trifolium pratense HOM05D005728 ORTHO05D005733 3.6e-13 78.6 115 40.9
VMungo0403G0001 Vigna mungo HOM05D005728 ORTHO05D005733 3.6e-13 78.6 115 42.6
Psat7g225080 Pisum sativum HOM05D005728 ORTHO05D005733 4.7e-13 78.2 106 43.4
Aqoxy1G01237 Aquilegia oxysepala HOM05D005728 ORTHO05D005733 8.0e-13 77.4 114 43.9
Lj3g0014252 Lotus japonicus HOM05D005728 ORTHO05D005733 8.0e-13 77.4 105 41.9
Psat5g279440 Pisum sativum HOM05D005728 ORTHO05D005733 8.0e-13 77.4 115 40.9
Lj3g0009869 Lotus japonicus HOM05D005728 ORTHO05D005733 1.4e-12 76.6 111 45.9
Medtr2g094210 Medicago truncatula HOM05D005728 ORTHO05D005733 1.8e-12 76.3 109 42.2
Lalb_Chr19g0137271 Lupinus albus HOM05D005728 ORTHO05D005733 3.0e-12 75.5 106 44.3
Phvul.011G079200 Phaseolus vulgaris HOM05D005728 ORTHO05D005733 4.0e-12 75.1 115 42.6
CiPaw.14G080700 Carya illinoinensis HOM05D005728 ORTHO05D005733 1.2e-11 73.6 93 50.5
EL10Ac9g22516 Beta vulgaris HOM05D005728 ORTHO05D005733 1.5e-11 73.2 107 43.0
AUR62024979 Chenopodium quinoa HOM05D005728 ORTHO05D005733 2.6e-11 72.4 115 36.5
Lalb_Chr14g0374671 Lupinus albus HOM05D005728 ORTHO05D005733 5.7e-11 71.2 112 42.9
Nitab4.5_0000650g0250 Nicotiana tabacum HOM05D005728 ORTHO05D005733 5.7e-11 71.2 114 40.4
Peaxi162Scf00270g00082 Petunia axillaris HOM05D005728 ORTHO05D005733 5.7e-11 71.2 113 45.1
DCAR_018811 Daucus carota HOM05D005728 ORTHO05D005733 9.8e-11 70.5 109 38.5
PSO063G1604 Papaver somniferum HOM05D005728 ORTHO05D005733 1.7e-10 69.7 121 39.7
AUR62039639 Chenopodium quinoa HOM05D005728 ORTHO05D005733 2.8e-10 68.9 115 38.3
PSO339G2100 Papaver somniferum HOM05D005728 ORTHO05D005733 2.8e-10 68.9 121 39.7
Cpa.g.sc216.7 Carica papaya HOM05D005728 ORTHO05D005733 3.7e-10 68.6 109 39.4
Nitab4.5_0012712g0010 Nicotiana tabacum HOM05D005728 ORTHO05D005733 4.8e-10 68.2 114 43.0
Ca_19255_v3 Cicer arietinum L. HOM05D005728 ORTHO05D005733 8.3e-10 67.4 110 42.7
Cc01_g11120 Coffea canephora HOM05D005728 ORTHO05D005733 5.4e-09 64.7 114 42.1
MBI07_g19310_MAGBIO Magnolia biondii HOM05D005728 ORTHO05D005733 7.0e-09 64.3 130 39.2
ECA238G1730 Erigeron canadensis HOM05D005728 ORTHO05D005733 2.7e-08 62.4 118 38.1
Solyc11g069420.2 Solanum lycopersicum HOM05D005728 ORTHO05D005733 4.5e-08 61.6 114 36.0
Sopen11g028140 Solanum pennellii HOM05D005728 ORTHO05D005733 4.5e-08 61.6 114 36.0
PGSC0003DMG400008077 Solanum tuberosum HOM05D005728 ORTHO05D005733 7.7e-08 60.8 114 36.8
A03p11060 Brassica napus HOM05D010860 ORTHO05D005733 1.0e-07 60.5 121 38.8
BraA03t10420Z Brassica rapa HOM05D010860 ORTHO05D005733 1.0e-07 60.5 121 38.8
Ah.01g014340 Amaranthus hybridus HOM05D005728 ORTHO05D005733 1.3e-07 60.1 108 38.9
SGA_v2.0_scaffold2G00890 Striga asiatica HOM05D005728 ORTHO05D005733 4.2e-06 55.1 109 36.7


User provided reference genes

Program Settings