Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL4G21000 Arabidopsis lyrata HOM05D004576 ORTHO05D005321 3.9e-65 251.5 147 100.0
AL4G21010 Arabidopsis lyrata HOM05D004576 ORTHO05D005321 2.9e-60 235.3 147 87.8
AT5G53000 Arabidopsis thaliana HOM05D004576 ORTHO05D005321 1.1e-59 233.4 147 89.1
AL8G27540 Arabidopsis lyrata HOM05D004576 ORTHO05D005321 1.2e-58 229.9 147 85.0
Thhalv10013705m.g Eutrema salsugineum HOM05D004576 ORTHO05D005321 5.1e-57 224.6 147 83.0
AL4G21090 Arabidopsis lyrata HOM05D004576 ORTHO05D005321 8.8e-57 223.8 147 87.8
Sp6g15160 Schrenkiella parvula HOM05D004576 ORTHO05D005321 8.8e-57 223.8 147 82.3
CARHR265990 Cardamine hirsuta HOM05D004576 ORTHO05D005321 4.3e-56 221.5 147 82.3
BcaC04g20518 Brassica carinata HOM05D004576 ORTHO05D005321 5.7e-56 221.1 147 83.0
BolC9t57147H Brassica oleracea HOM05D004576 ORTHO05D005321 5.7e-56 221.1 147 83.0
A10p10480 Brassica napus HOM05D004576 ORTHO05D005321 1.3e-55 219.9 147 81.6
C09p42710 Brassica napus HOM05D004576 ORTHO05D005321 1.3e-55 219.9 147 81.6
AL8G27600 Arabidopsis lyrata HOM05D004576 ORTHO05D005321 2.2e-55 219.2 153 81.0
BraA10t43131Z Brassica rapa HOM05D004576 ORTHO05D005321 1.1e-54 216.9 147 80.3
Carub.0008s1320 Capsella rubella HOM05D004576 ORTHO05D005321 6.9e-54 214.2 147 78.2
Aa31LG9G16760 Aethionema arabicum HOM05D004576 ORTHO05D005321 1.3e-52 209.9 147 78.9
THA.LOC104799972 Tarenaya hassleriana HOM05D004576 ORTHO05D005321 8.8e-49 197.2 147 74.8
Rhsim09G0206100 Rhododendron simsii HOM05D004576 ORTHO05D005321 4.8e-47 191.4 145 70.3
CSS0016084 Camellia sinensis var. sinensis HOM05D004576 ORTHO05D005321 2.4e-46 189.1 139 73.4
Hund11655 Selenicereus undatus HOM05D004576 ORTHO05D005321 7.0e-46 187.6 147 68.0
GSVIVG01038559001 Vitis vinifera HOM05D004576 ORTHO05D005321 7.0e-46 187.6 145 69.0
CSS0008628 Camellia sinensis var. sinensis HOM05D004576 ORTHO05D005321 9.1e-46 187.2 145 69.7
Ah.07g205540 Amaranthus hybridus HOM05D004576 ORTHO05D005321 1.2e-45 186.8 147 71.4
Hma1.2p1_1507F.1_g287630 Hydrangea macrophylla HOM05D004576 ORTHO05D005321 2.0e-45 186.0 145 69.0
Prupe.2G309200 Prunus persica HOM05D004576 ORTHO05D005321 2.6e-45 185.7 145 68.3
Duzib068G0175 Durio zibethinus HOM05D004576 ORTHO05D005321 4.5e-45 184.9 144 77.1
Gohir.D04G001200 Gossypium hirsutum HOM05D004576 ORTHO05D005321 4.5e-45 184.9 147 70.1
Gorai.012G002200 Gossypium raimondii HOM05D004576 ORTHO05D005321 4.5e-45 184.9 147 70.1
Potri.012G016500 Populus trichocarpa HOM05D004576 ORTHO05D005321 5.9e-45 184.5 145 69.0
vmacro10126 Vaccinium macrocarpon HOM05D004576 ORTHO05D005321 5.9e-45 184.5 146 68.5
MELO3C021489.2 Cucumis melo HOM05D004576 ORTHO05D005321 1.3e-44 183.3 145 75.2
CiPaw.06G045600 Carya illinoinensis HOM05D004576 ORTHO05D005321 2.9e-44 182.2 145 68.3
Sc25g0000910 Simmondsia chinensis HOM05D004576 ORTHO05D005321 2.9e-44 182.2 147 69.4
Cpa.g.sc3.95 Carica papaya HOM05D004576 ORTHO05D005321 3.8e-44 181.8 145 67.6
ClCG09G018570 Citrullus lanatus HOM05D004576 ORTHO05D005321 3.8e-44 181.8 145 74.5
Dinv35342 Davidia involucrata HOM05D004576 ORTHO05D005321 5.0e-44 181.4 145 67.6
Dinv29270 Davidia involucrata HOM05D004576 ORTHO05D005321 6.5e-44 181.0 145 67.6
Gohir.A05G415000 Gossypium hirsutum HOM05D004576 ORTHO05D005321 6.5e-44 181.0 147 67.3
Lj4g0015379 Lotus japonicus HOM05D004576 ORTHO05D005321 6.5e-44 181.0 145 68.3
TPR.G18754 Trifolium pratense HOM05D004576 ORTHO05D005321 6.5e-44 181.0 144 69.4
Ca_16714_v3 Cicer arietinum L. HOM05D004576 ORTHO05D005321 8.5e-44 180.6 144 69.4
Solyc01g006110.3 Solanum lycopersicum HOM05D004576 ORTHO05D005321 1.1e-43 180.3 143 67.1
Sopen01g002110 Solanum pennellii HOM05D004576 ORTHO05D005321 1.1e-43 180.3 143 67.1
EL10Ac3g05272 Beta vulgaris HOM05D004576 ORTHO05D005321 1.4e-43 179.9 147 65.3
Manes.10G051900 Manihot esculenta HOM05D004576 ORTHO05D005321 1.4e-43 179.9 145 70.3
Psat5g076560 Pisum sativum HOM05D004576 ORTHO05D005321 1.4e-43 179.9 144 69.4
Thecc.03G200200 Theobroma cacao HOM05D004576 ORTHO05D005321 1.4e-43 179.9 136 72.8
CAN.G140.19 Capsicum annuum HOM05D004576 ORTHO05D005321 1.9e-43 179.5 143 66.4
AUR62019411 Chenopodium quinoa HOM05D004576 ORTHO05D005321 1.9e-43 179.5 147 64.6
Lalb_Chr11g0066931 Lupinus albus HOM05D004576 ORTHO05D005321 1.9e-43 179.5 145 66.2
SGA_v2.0_scaffold192G40533 Striga asiatica HOM05D004576 ORTHO05D005321 1.9e-43 179.5 147 68.0
arahy.Tifrunner.gnm1.ann1.EHU7FT Arachis hypogaea HOM05D004576 ORTHO05D005321 3.2e-43 178.7 145 65.5
arahy.Tifrunner.gnm1.ann1.S03LBS Arachis hypogaea HOM05D004576 ORTHO05D005321 3.2e-43 178.7 145 65.5
COL.COLO4_16771 Corchorus olitorius HOM05D004576 ORTHO05D005321 3.2e-43 178.7 159 64.2
MD07G1287100 Malus domestica HOM05D004576 ORTHO05D005321 4.2e-43 178.3 145 66.9
MD07G1287400 Malus domestica HOM05D004576 ORTHO05D005321 4.2e-43 178.3 145 66.9
PGSC0003DMG400032187 Solanum tuberosum HOM05D004576 ORTHO05D005321 4.2e-43 178.3 143 66.4
MD01G1217800 Malus domestica HOM05D004576 ORTHO05D005321 5.5e-43 177.9 145 66.2
Medtr3g091640 Medicago truncatula HOM05D004576 ORTHO05D005321 5.5e-43 177.9 144 68.1
RcHm_v2.0_Chr1g0380451 Rosa chinensis HOM05D004576 ORTHO05D005321 5.5e-43 177.9 147 66.0
TWI39G0751 Tripterygium wilfordii HOM05D004576 ORTHO05D005321 5.5e-43 177.9 147 63.3
CAN.G575.13 Capsicum annuum HOM05D004576 ORTHO05D005321 7.2e-43 177.6 147 64.6
Manes.07G095000 Manihot esculenta HOM05D004576 ORTHO05D005321 7.2e-43 177.6 145 71.0
Nitab4.5_0003555g0040 Nicotiana tabacum HOM05D004576 ORTHO05D005321 7.2e-43 177.6 144 64.6
Eucgr.A01454 Eucalyptus grandis HOM05D004576 ORTHO05D005321 9.4e-43 177.2 144 67.4
Glyma.06G129650 Glycine max HOM05D005525 ORTHO05D006341 9.4e-43 177.2 144 66.7
TAR629G2734 Trochodendron aralioides HOM05D004576 ORTHO05D005321 1.6e-42 176.4 145 64.8
CANSAT21G1766 Cannabis sativa HOM05D004576 ORTHO05D005321 2.7e-42 175.6 145 64.1
CsaV3_5G037660 Cucumis sativus L. HOM05D004576 ORTHO05D005321 3.6e-42 175.3 145 73.8
FAN06G1560 Fragaria x ananassa HOM05D004576 ORTHO05D005321 4.7e-42 174.9 147 63.3
Gohir.D12G250200 Gossypium hirsutum HOM05D004576 ORTHO05D005321 4.7e-42 174.9 137 75.2
Gorai.008G268300 Gossypium raimondii HOM05D004576 ORTHO05D005321 4.7e-42 174.9 137 75.2
Cfa016237 Carpinus fangiana HOM05D004576 ORTHO05D005321 6.1e-42 174.5 144 68.8
Cc02_g01450 Coffea canephora HOM05D004576 ORTHO05D005321 6.1e-42 174.5 144 64.6
Glyma.04G234900 Glycine max HOM05D004576 ORTHO05D005321 6.1e-42 174.5 144 66.0
FAN06G0548 Fragaria x ananassa HOM05D004576 ORTHO05D005321 1.0e-41 173.7 147 62.6
Sed0009575 Sechium edule HOM05D004576 ORTHO05D005321 1.0e-41 173.7 145 75.2
AUR62006083 Chenopodium quinoa HOM05D004576 ORTHO05D005321 1.4e-41 173.3 147 71.4
Haze_00204 Corylus avellana HOM05D004576 ORTHO05D005321 1.4e-41 173.3 144 68.1
FvH4_7g31380 Fragaria vesca HOM05D004576 ORTHO05D005321 1.8e-41 172.9 147 61.9
PGR042G3016 Punica granatum HOM05D004576 ORTHO05D005321 1.8e-41 172.9 145 64.1
Sed0014456 Sechium edule HOM05D004576 ORTHO05D005321 1.8e-41 172.9 145 73.1
Actinidia06144 Actinidia chinensis HOM05D004576 ORTHO05D005321 3.0e-41 172.2 143 71.3
Potri.015G012200 Populus trichocarpa HOM05D004576 ORTHO05D005321 3.0e-41 172.2 145 66.2
Oeu041059.3 Olea europaea HOM05D004576 ORTHO05D005321 3.9e-41 171.8 149 65.1
VMungo1309G0981 Vigna mungo HOM05D005525 ORTHO05D005321 5.2e-41 171.4 144 64.6
FAN03G3343 Fragaria x ananassa HOM05D004576 ORTHO05D005321 1.1e-40 170.2 147 61.2
Phvul.009G051900 Phaseolus vulgaris HOM05D004576 ORTHO05D005321 2.0e-40 169.5 144 63.2
BolC2t08029H Brassica oleracea HOM05D004576 ORTHO05D005321 2.6e-40 169.1 138 67.4
FAN01G2495 Fragaria x ananassa HOM05D004576 ORTHO05D005321 3.3e-40 168.7 147 60.5
Migut.F00204 Erythranthe guttata HOM05D004576 ORTHO05D005321 5.7e-40 167.9 147 62.6
Hma1.2p1_0404F.1_g145290 Hydrangea macrophylla HOM05D004576 ORTHO05D005321 1.7e-39 166.4 147 63.9
Hma1.2p1_1587F.1_g292290 Hydrangea macrophylla HOM05D004576 ORTHO05D005321 1.7e-39 166.4 147 63.9
Sabra15G0009800 Salix brachista HOM05D004576 ORTHO05D005321 1.7e-39 166.4 145 64.1
ECA238G3082 Erigeron canadensis HOM05D004576 ORTHO05D005321 3.7e-39 165.2 144 63.2
DCAR_020325 Daucus carota HOM05D004576 ORTHO05D005321 6.3e-39 164.5 144 69.4
SalBow4G0465 Salvia bowleyana HOM05D004576 ORTHO05D005321 6.3e-39 164.5 192 51.6
Atru.chr12.2224 Acer truncatum HOM05D004576 ORTHO05D005321 8.2e-39 164.1 148 61.5
Peaxi162Scf00441g00115 Petunia axillaris HOM05D004576 ORTHO05D005321 1.1e-38 163.7 147 67.3
MSTRG.27022 Avicennia marina HOM05D004576 ORTHO05D005321 9.1e-38 160.6 137 70.8
Nn1g00276 Nelumbo nucifera HOM05D004576 ORTHO05D005321 9.1e-38 160.6 145 60.0
QL09p008710 Quercus lobata HOM05D004576 ORTHO05D005321 1.6e-37 159.8 182 57.7
TAR633G0881 Trochodendron aralioides HOM05D004576 ORTHO05D005321 2.6e-37 159.1 145 60.7
Lsat_1_v5_gn_2_136141 Lactuca sativa HOM05D004576 ORTHO05D005321 3.8e-36 155.2 143 60.8
Os12g0137500 Oryza sativa ssp. japonica HOM05D004576 ORTHO05D005321 5.0e-36 154.8 147 54.4
Ciclev10020388m.g Citrus clementina HOM05D004576 ORTHO05D005321 6.5e-36 154.5 153 64.1
Os11g0141000 Oryza sativa ssp. japonica HOM05D004576 ORTHO05D005321 8.5e-36 154.1 147 54.4
PSO170G4165 Papaver somniferum HOM05D004576 ORTHO05D005321 2.5e-35 152.5 145 64.8
PSO170G5996 Papaver somniferum HOM05D004576 ORTHO05D005321 2.5e-35 152.5 145 64.8
HPP92_010727 Vanilla planifolia HOM05D004576 ORTHO05D005321 2.5e-35 152.5 145 57.9
Aqoxy7G00528 Aquilegia oxysepala HOM05D004576 ORTHO05D005321 4.2e-35 151.8 142 57.7
PSO063G4456 Papaver somniferum HOM05D004576 ORTHO05D005321 5.5e-35 151.4 145 57.9
Zm00001eb093250 Zea mays HOM05D004576 ORTHO05D005321 5.5e-35 151.4 147 53.7
unitig_748.g7294 Utricularia gibba HOM05D004576 ORTHO05D005321 7.2e-35 151.0 147 66.7
HanXRQChr07g0206441 Helianthus annuus HOM05D004576 ORTHO05D005321 9.4e-35 150.6 146 58.9
CDE02G4477 Ceratophyllum demersum HOM05D004576 ORTHO05D005321 8.0e-34 147.5 143 63.6
ATR0763G025 Amborella trichopoda HOM05D004576 ORTHO05D005321 1.5e-32 143.3 145 58.6
MBI06_g10867_MAGBIO Magnolia biondii HOM05D004576 ORTHO05D005321 7.5e-32 141.0 170 55.9
Oeu023658.2 Olea europaea HOM05D004576 ORTHO05D005321 2.8e-31 139.0 128 62.5
Lsat_1_v5_gn_3_139541 Lactuca sativa HOM05D004576 ORTHO05D005321 3.1e-30 135.6 138 57.2
SEGI_39808 Sequoiadendron giganteum HOM05D004576 ORTHO05D005321 7.0e-30 134.4 147 52.4
Nitab4.5_0005477g0060 Nicotiana tabacum HOM05D004576 ORTHO05D005321 9.1e-30 134.0 115 60.9
Lj3C903T12 Lonicera japonica HOM05D004576 ORTHO05D005321 1.6e-29 133.3 114 62.3
Nitab4.5_0001620g0020 Nicotiana tabacum HOM05D004576 ORTHO05D005321 2.0e-29 132.9 114 62.3
Zm00001eb196410 Zea mays HOM05D004576 ORTHO05D005321 6.5e-28 127.9 147 48.3
Gohir.A12G249400 Gossypium hirsutum HOM05D004576 ORTHO05D005321 1.9e-27 126.3 137 60.6
Pp3c27_2200 Physcomitrium patens HOM05D004576 ORTHO05D005321 2.7e-26 122.5 147 50.3
Pp3c27_2230 Physcomitrium patens HOM05D004576 ORTHO05D005321 2.7e-26 122.5 147 50.3
Medtr1g050518 Medicago truncatula HOM05D004576 ORTHO05D005321 1.0e-25 120.6 114 64.0
SHI02368 Sapria himalayana HOM05D004576 ORTHO05D005321 3.0e-25 119.0 131 55.7
BcaC03g14466 Brassica carinata HOM05D004576 ORTHO05D005321 5.7e-24 114.8 137 52.6
SMO118G0543 Selaginella moellendorffii HOM05D004576 ORTHO05D005321 5.7e-24 114.8 144 48.6
Mapoly0036s0077 Marchantia polymorpha HOM05D004576 ORTHO05D005321 3.7e-23 112.1 111 53.2
AL4G21040 Arabidopsis lyrata HOM05D004576 ORTHO05D005321 5.4e-22 108.2 80 81.2
CiPaw.05G197500 Carya illinoinensis HOM05D004576 ORTHO05D005321 2.7e-21 105.9 136 50.7
Lj1g0016726 Lotus japonicus HOM05D004576 ORTHO05D005321 4.7e-18 95.1 62 77.4
AagrBONN_evm.TU.Sc2ySwM_368.1428 Anthoceros agrestis HOM05D004576 ORTHO05D005321 1.0e-17 94.0 147 42.9
CBR_g54194 Chara braunii HOM05D004576 ORTHO05D005321 1.5e-16 90.1 108 48.1
SGA_v2.0_scaffold44G16809 Striga asiatica HOM05D004576 ORTHO05D005321 4.4e-16 88.6 65 69.2
PGSC0003DMG400004286 Solanum tuberosum HOM05D004576 ORTHO05D005321 3.7e-15 85.5 77 61.0
MBI07_g45568_MAGBIO Magnolia biondii HOM05D004576 ORTHO05D005321 1.5e-11 73.6 108 41.7
MBI07_g24780_MAGBIO Magnolia biondii HOM05D004576 ORTHO05D005321 2.6e-08 62.8 134 32.8
BcaB05g21998 Brassica carinata HOM05D004576 ORTHO05D005321 5.8e-08 61.6 62 61.3
Cfa025674 Carpinus fangiana HOM05D004576 ORTHO05D005321 1.1e-06 57.4 120 30.8
AL8G27630 Arabidopsis lyrata HOM05D004576 ORTHO05D079524 1.9e-06 56.6 52 65.4
TPR.G19381 Trifolium pratense HOM05D000003 ORTHO05D000004 7.0e-06 54.7 31 80.6
PRCOL_00002440 Prasinoderma coloniale HOM05D004576 ORTHO05D005321 9.2e-06 54.3 138 31.2


User provided reference genes

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