Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL4G20970 Arabidopsis lyrata HOM05D002866 ORTHO05D008706 3.8e-120 434.9 225 100.0
AL6G41360 Arabidopsis lyrata HOM05D002866 ORTHO05D008706 1.0e-109 400.2 225 94.2
AL7G45270 Arabidopsis lyrata HOM05D002866 ORTHO05D008706 3.4e-100 368.6 225 89.3
AL9U10640 Arabidopsis lyrata HOM05D002866 ORTHO05D008706 5.1e-80 301.6 196 84.7
AL8G38230 Arabidopsis lyrata HOM05D002866 ORTHO05D008706 2.0e-76 289.7 158 96.2
BcaC04g23445 Brassica carinata HOM05D002866 ORTHO05D008706 2.2e-75 286.2 158 94.3
BraA03t13839Z Brassica rapa HOM05D002866 ORTHO05D008706 4.9e-75 285.0 158 93.0
A03p47120 Brassica napus HOM05D002866 ORTHO05D008929 1.1e-74 283.9 158 93.0
C07p45230 Brassica napus HOM05D002866 ORTHO05D008929 1.1e-74 283.9 158 93.0
C09p08260 Brassica napus HOM05D002866 ORTHO05D008706 1.1e-74 283.9 158 93.0
BolC9t53736H Brassica oleracea HOM05D002866 ORTHO05D008706 1.1e-74 283.9 158 93.0
AT5G61530 Arabidopsis thaliana HOM05D002866 ORTHO05D008706 1.4e-74 283.5 158 93.0
Sp2g24730 Schrenkiella parvula HOM05D002866 ORTHO05D008706 1.4e-74 283.5 158 93.0
A09p07320 Brassica napus HOM05D002866 ORTHO05D008706 5.4e-74 281.6 158 91.8
BraA09t36387Z Brassica rapa HOM05D002866 ORTHO05D008706 5.4e-74 281.6 158 91.8
BcaNung01432 Brassica carinata HOM05D002866 ORTHO05D008706 7.1e-74 281.2 158 91.8
Thhalv10005440m.g Eutrema salsugineum HOM05D002866 ORTHO05D008706 7.1e-74 281.2 158 91.1
BolC7t45046H Brassica oleracea HOM05D002866 ORTHO05D008929 7.8e-73 277.7 163 90.2
Carub.0008s2222 Capsella rubella HOM05D002866 ORTHO05D008706 1.3e-72 276.9 158 92.4
CARHR275300 Cardamine hirsuta HOM05D002866 ORTHO05D008706 7.3e-71 271.2 158 90.5
THA.LOC104819416 Tarenaya hassleriana HOM05D002866 ORTHO05D008706 6.4e-67 258.1 158 84.8
Prupe.2G274000 Prunus persica HOM05D002866 ORTHO05D008706 3.5e-65 252.3 158 80.4
MD01G1178200 Malus domestica HOM05D002866 ORTHO05D008706 6.0e-65 251.5 158 80.4
Aa31LG11G1890 Aethionema arabicum HOM05D002866 ORTHO05D008706 3.9e-64 248.8 176 76.1
CiPaw.07G185900 Carya illinoinensis HOM05D002866 ORTHO05D008706 8.7e-64 247.7 158 78.5
CANSAT56G0863 Cannabis sativa HOM05D002866 ORTHO05D008706 1.5e-63 246.9 158 78.5
Cpa.g.sc13.273 Carica papaya HOM05D002866 ORTHO05D008706 2.5e-63 246.1 158 77.8
MD07G1250400 Malus domestica HOM05D002866 ORTHO05D008706 3.3e-63 245.7 158 79.1
Gohir.D12G199800 Gossypium hirsutum HOM05D002866 ORTHO05D008706 7.3e-63 244.6 158 78.5
RcHm_v2.0_Chr1g0373901 Rosa chinensis HOM05D002866 ORTHO05D008706 7.3e-63 244.6 158 79.1
ClCG07G016890 Citrullus lanatus HOM05D002866 ORTHO05D008706 9.6e-63 244.2 158 77.8
Gohir.A12G197200 Gossypium hirsutum HOM05D002866 ORTHO05D008706 1.3e-62 243.8 158 77.8
COL.COLO4_14065 Corchorus olitorius HOM05D002866 ORTHO05D008706 2.1e-62 243.0 158 78.5
QL09p028565 Quercus lobata HOM05D002866 ORTHO05D008706 2.8e-62 242.7 158 77.2
Duzib205G1859 Durio zibethinus HOM05D002866 ORTHO05D008706 3.6e-62 242.3 158 77.8
Thecc.03G150500 Theobroma cacao HOM05D002866 ORTHO05D008706 8.1e-62 241.1 158 79.1
Atru.chr1.857 Acer truncatum HOM05D002866 ORTHO05D008706 1.8e-61 240.0 158 77.8
Haze_22176 Corylus avellana HOM05D002866 ORTHO05D008706 1.8e-61 240.0 158 74.7
Cfa013555 Carpinus fangiana HOM05D002866 ORTHO05D008706 2.4e-61 239.6 158 75.3
CiPaw.08G040800 Carya illinoinensis HOM05D002866 ORTHO05D008706 2.4e-61 239.6 158 76.6
MELO3C017654.2 Cucumis melo HOM05D002866 ORTHO05D008706 3.1e-61 239.2 158 75.9
FvH4_7g27080 Fragaria vesca HOM05D002866 ORTHO05D008706 3.1e-61 239.2 158 75.3
FAN06G0035 Fragaria x ananassa HOM05D002866 ORTHO05D008706 3.1e-61 239.2 158 75.3
FAN10G3812 Fragaria x ananassa HOM05D002866 ORTHO05D008706 3.1e-61 239.2 158 75.3
Ciclev10005197m.g Citrus clementina HOM05D002866 ORTHO05D008706 9.0e-61 237.7 158 74.7
FAN06G0893 Fragaria x ananassa HOM05D002866 ORTHO05D008706 9.0e-61 237.7 158 74.7
CsaV3_4G004120 Cucumis sativus L. HOM05D002866 ORTHO05D008706 1.2e-60 237.3 158 75.3
Nitab4.5_0002346g0030 Nicotiana tabacum HOM05D002866 ORTHO05D008706 1.2e-60 237.3 158 74.7
Sed0026429 Sechium edule HOM05D002866 ORTHO05D008706 1.2e-60 237.3 158 75.3
Eucgr.K00134 Eucalyptus grandis HOM05D002866 ORTHO05D008706 1.5e-60 236.9 158 73.4
Nitab4.5_0001267g0040 Nicotiana tabacum HOM05D002866 ORTHO05D008706 1.5e-60 236.9 158 74.7
Oeu021695.1 Olea europaea HOM05D002866 ORTHO05D008706 2.0e-60 236.5 158 74.7
Lj3g0011743 Lotus japonicus HOM05D002866 ORTHO05D008706 5.8e-60 235.0 158 74.7
Solyc03g093430.3 Solanum lycopersicum HOM05D002866 ORTHO05D008706 7.6e-60 234.6 158 73.4
Sopen03g024260 Solanum pennellii HOM05D002866 ORTHO05D008706 7.6e-60 234.6 158 73.4
PGSC0003DMG400018852 Solanum tuberosum HOM05D002866 ORTHO05D008706 7.6e-60 234.6 158 73.4
Glyma.09G001400 Glycine max HOM05D002866 ORTHO05D008706 9.9e-60 234.2 158 73.4
Potri.004G233400 Populus trichocarpa HOM05D002866 ORTHO05D008706 1.3e-59 233.8 158 75.3
Peaxi162Scf00271g00837 Petunia axillaris HOM05D002866 ORTHO05D008706 1.7e-59 233.4 158 73.4
HanXRQChr05g0139511 Helianthus annuus HOM05D002866 ORTHO05D008706 2.9e-59 232.6 158 72.2
Lsat_1_v5_gn_8_9940 Lactuca sativa HOM05D002866 ORTHO05D008706 4.9e-59 231.9 162 71.6
TWI39G0340 Tripterygium wilfordii HOM05D002866 ORTHO05D008706 8.4e-59 231.1 158 72.8
Glyma.12G241300 Glycine max HOM05D002866 ORTHO05D008706 1.1e-58 230.7 158 73.4
Actinidia13600 Actinidia chinensis HOM05D000164 ORTHO05D000096 1.4e-58 230.3 158 73.4
Ca_19791_v3 Cicer arietinum L. HOM05D002866 ORTHO05D008706 1.9e-58 229.9 158 72.2
Gorai.008G215000 Gossypium raimondii HOM05D002866 ORTHO05D008706 2.4e-58 229.6 186 66.7
PGR142G0955 Punica granatum HOM05D002866 ORTHO05D008706 2.4e-58 229.6 158 73.4
VMungo1127G0600 Vigna mungo HOM05D002866 ORTHO05D008706 2.4e-58 229.6 158 72.2
CSS0019630 Camellia sinensis var. sinensis HOM05D002866 ORTHO05D008706 3.2e-58 229.2 158 72.2
CSS0049284 Camellia sinensis var. sinensis HOM05D002866 ORTHO05D008706 4.2e-58 228.8 158 72.2
Manes.06G132500 Manihot esculenta HOM05D002866 ORTHO05D008706 4.2e-58 228.8 158 72.8
TPR.G4977 Trifolium pratense HOM05D002866 ORTHO05D008706 4.2e-58 228.8 158 72.2
TAR629G0107 Trochodendron aralioides HOM05D002866 ORTHO05D008706 5.4e-58 228.4 158 74.7
Psat7g229240 Pisum sativum HOM05D002866 ORTHO05D008706 7.1e-58 228.0 158 72.8
CAN.G485.11 Capsicum annuum HOM05D002866 ORTHO05D008706 1.6e-57 226.9 159 71.7
Medtr4g029530 Medicago truncatula HOM05D002866 ORTHO05D008706 1.6e-57 226.9 158 71.5
Rhsim03G0163000 Rhododendron simsii HOM05D002866 ORTHO05D008706 1.6e-57 226.9 158 72.2
Cc02_g04580 Coffea canephora HOM05D002866 ORTHO05D008706 3.5e-57 225.7 158 70.9
vmacro22347 Vaccinium macrocarpon HOM05D002866 ORTHO05D008706 3.5e-57 225.7 158 72.8
Sabra01G0178500 Salix brachista HOM05D002866 ORTHO05D008706 4.6e-57 225.3 158 73.4
MSTRG.135 Avicennia marina HOM05D002866 ORTHO05D008706 1.0e-56 224.2 158 71.5
Dinv06581 Davidia involucrata HOM05D002866 ORTHO05D008706 3.0e-56 222.6 162 72.8
TAR636G1476 Trochodendron aralioides HOM05D002866 ORTHO05D008706 6.6e-56 221.5 158 70.9
MBI04_g34101_MAGBIO Magnolia biondii HOM05D002866 ORTHO05D008706 8.7e-56 221.1 160 69.4
Dinv16857 Davidia involucrata HOM05D002866 ORTHO05D000096 1.1e-55 220.7 158 72.8
Lalb_Chr01g0008171 Lupinus albus HOM05D002866 ORTHO05D008706 1.1e-55 220.7 158 69.0
Lj1A977T67 Lonicera japonica HOM05D002866 ORTHO05D008706 1.9e-55 219.9 187 62.6
Lalb_Chr03g0033851 Lupinus albus HOM05D002866 ORTHO05D008706 2.5e-55 219.5 158 69.0
Migut.F00510 Erythranthe guttata HOM05D002866 ORTHO05D008706 3.3e-55 219.2 158 69.6
Nn6g33864 Nelumbo nucifera HOM05D002866 ORTHO05D008706 9.6e-55 217.6 158 69.0
arahy.Tifrunner.gnm1.ann1.J95VX3 Arachis hypogaea HOM05D002866 ORTHO05D008706 1.3e-54 217.2 181 63.0
arahy.Tifrunner.gnm1.ann1.E5894Z Arachis hypogaea HOM05D002866 ORTHO05D008706 2.8e-54 216.1 187 61.0
Aqoxy3G02809 Aquilegia oxysepala HOM05D002866 ORTHO05D008706 3.6e-54 215.7 158 68.4
Ah.07g207580 Amaranthus hybridus HOM05D002866 ORTHO05D008706 1.4e-53 213.8 158 66.5
EL10Ac3g05867 Beta vulgaris HOM05D002866 ORTHO05D008706 1.8e-53 213.4 158 67.7
PSO063G2361 Papaver somniferum HOM05D002866 ORTHO05D008706 2.4e-53 213.0 158 65.8
Eucgr.A02912 Eucalyptus grandis HOM05D002866 ORTHO05D008706 4.0e-53 212.2 158 67.7
Os07g0486500 Oryza sativa ssp. japonica HOM05D002866 ORTHO05D008706 4.0e-53 212.2 158 65.2
unitig_0.g267 Utricularia gibba HOM05D002866 ORTHO05D008706 4.0e-53 212.2 158 65.8
CDE02G3129 Ceratophyllum demersum HOM05D002866 ORTHO05D008706 6.9e-53 211.5 149 69.8
FAN01G3021 Fragaria x ananassa HOM05D002866 ORTHO05D008706 5.8e-52 208.4 179 62.6
SGA_v2.0_scaffold60G20804 Striga asiatica HOM05D006112 ORTHO05D000096 5.8e-52 208.4 184 59.8
Zm00001eb105130 Zea mays HOM05D002866 ORTHO05D008706 4.9e-51 205.3 143 69.2
FAN03G0071 Fragaria x ananassa HOM05D002866 ORTHO05D008706 1.4e-50 203.8 145 71.7
ATR0057G110 Amborella trichopoda HOM05D002866 ORTHO05D008706 1.1e-45 187.6 176 56.8
HPP92_007440 Vanilla planifolia HOM05D002866 ORTHO05D008706 7.6e-44 181.4 150 60.7
Hund27168 Selenicereus undatus HOM05D002866 ORTHO05D008706 2.2e-43 179.9 238 45.4
Zm00001eb321610 Zea mays HOM05D002866 ORTHO05D008706 1.8e-37 160.2 151 57.0
GSVIVG01032279001 Vitis vinifera HOM05D002866 ORTHO05D008706 3.4e-36 156.0 130 64.6
AUR62015444 Chenopodium quinoa HOM05D002866 ORTHO05D008706 2.9e-35 152.9 158 55.1
AUR62002232 Chenopodium quinoa HOM05D002866 ORTHO05D008706 2.1e-33 146.7 158 51.3
AagrBONN_evm.TU.Sc2ySwM_368.2292 Anthoceros agrestis HOM05D002866 ORTHO05D008706 8.7e-32 141.4 151 48.3
CBR_g12377 Chara braunii HOM05D002866 ORTHO05D008706 1.8e-24 117.1 146 45.9
Mapoly0101s0019 Marchantia polymorpha HOM05D002866 ORTHO05D008706 5.1e-24 115.5 177 38.4
SEGI_37372 Sequoiadendron giganteum HOM05D002866 ORTHO05D008706 4.3e-23 112.5 88 58.0
GSVIVG01032275001 Vitis vinifera HOM05D002866 ORTHO05D008706 1.4e-13 80.9 61 62.3
GSVIVG01005702001 Vitis vinifera HOM05D002866 ORTHO05D008706 2.6e-12 76.6 63 60.3
GSVIVG01006058001 Vitis vinifera HOM05D002866 ORTHO05D441252 1.4e-08 64.3 39 79.5
GSVIVG01005989001 Vitis vinifera HOM05D002866 ORTHO05D440186 3.0e-08 63.2 39 76.9
GSVIVG01032273001 Vitis vinifera HOM05D002866 ORTHO05D008706 3.7e-06 56.2 43 60.5


User provided reference genes

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