Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL4G20260 Arabidopsis lyrata HOM05D004791 ORTHO05D005637 1.3e-123 446.4 224 100.0
AT2G26970 Arabidopsis thaliana HOM05D004791 ORTHO05D005637 8.5e-112 407.1 224 91.5
Carub.0004s0745 Capsella rubella HOM05D004791 ORTHO05D005637 1.4e-106 389.8 224 86.6
Sp4g08380 Schrenkiella parvula HOM05D004791 ORTHO05D005637 3.1e-106 388.7 229 85.2
Aa31LG5G8380 Aethionema arabicum HOM05D004791 ORTHO05D005637 2.7e-102 375.6 225 81.3
Thhalv10002092m.g Eutrema salsugineum HOM05D004791 ORTHO05D005637 1.0e-101 373.6 223 83.9
BraA09t35872Z Brassica rapa HOM05D004791 ORTHO05D005637 5.2e-101 371.3 224 83.0
CARHR119150 Cardamine hirsuta HOM05D004791 ORTHO05D005637 8.8e-101 370.5 223 81.6
A09p02230 Brassica napus HOM05D004791 ORTHO05D005637 1.5e-100 369.8 224 82.6
BcaB01g01998 Brassica carinata HOM05D004791 ORTHO05D005637 4.4e-100 368.2 225 82.7
C09p02320 Brassica napus HOM05D004791 ORTHO05D005637 4.4e-100 368.2 222 84.2
BcaC04g24019 Brassica carinata HOM05D004791 ORTHO05D005637 1.3e-99 366.7 223 83.9
BolC9t53160H Brassica oleracea HOM05D004791 ORTHO05D005637 1.1e-98 363.6 225 83.1
THA.LOC104800478 Tarenaya hassleriana HOM05D004791 ORTHO05D005637 7.5e-92 340.9 239 71.1
THA.LOC104816959 Tarenaya hassleriana HOM05D004791 ORTHO05D005637 1.2e-89 333.6 238 72.3
Hund25111 Selenicereus undatus HOM05D004791 ORTHO05D005637 8.9e-85 317.4 241 67.6
CSS0048046 Camellia sinensis var. sinensis HOM05D004791 ORTHO05D005637 2.2e-83 312.8 233 66.5
GSVIVG01037421001 Vitis vinifera HOM05D004791 ORTHO05D005637 1.1e-82 310.5 242 65.7
Manes.05G196500 Manihot esculenta HOM05D004791 ORTHO05D005637 3.2e-82 308.9 254 64.2
ECA248G0040 Erigeron canadensis HOM05D004791 ORTHO05D005637 4.1e-82 308.5 223 66.8
RcHm_v2.0_Chr5g0050091 Rosa chinensis HOM05D004791 ORTHO05D005637 4.1e-82 308.5 232 65.5
CSS0048448 Camellia sinensis var. sinensis HOM05D004791 ORTHO05D005637 5.4e-82 308.1 249 63.5
HanXRQChr01g0013701 Helianthus annuus HOM05D004791 ORTHO05D005637 9.2e-82 307.4 231 65.4
Gohir.D13G235800 Gossypium hirsutum HOM05D004791 ORTHO05D005637 2.0e-81 306.2 234 62.4
LjContig00564g0026958 Lotus japonicus HOM05D004791 ORTHO05D005637 2.0e-81 306.2 240 63.3
Gorai.004G001600 Gossypium raimondii HOM05D004791 ORTHO05D005637 2.7e-81 305.8 232 65.9
SGA_v2.0_scaffold158G37484 Striga asiatica HOM05D004791 ORTHO05D005637 3.5e-81 305.4 236 64.0
arahy.Tifrunner.gnm1.ann1.7GTL8A Arachis hypogaea HOM05D004791 ORTHO05D005637 4.6e-81 305.1 204 72.5
Gohir.A08G000072 Gossypium hirsutum HOM05D004791 ORTHO05D005637 4.6e-81 305.1 232 64.7
MD02G1268200 Malus domestica HOM05D004791 ORTHO05D005637 4.6e-81 305.1 244 63.9
PGR102G1910 Punica granatum HOM05D004791 ORTHO05D005637 4.6e-81 305.1 253 61.7
Gohir.D08G008400 Gossypium hirsutum HOM05D004791 ORTHO05D005637 7.8e-81 304.3 232 65.5
SalBow6G3468 Salvia bowleyana HOM05D004791 ORTHO05D005637 1.0e-80 303.9 248 62.5
FvH4_3g27591 Fragaria vesca HOM05D004791 ORTHO05D005637 1.3e-80 303.5 234 64.5
arahy.Tifrunner.gnm1.ann1.FGXA9Q Arachis hypogaea HOM05D004791 ORTHO05D005637 1.7e-80 303.1 204 72.1
Lsat_1_v5_gn_5_176000 Lactuca sativa HOM05D004791 ORTHO05D005637 2.3e-80 302.8 246 60.6
MD07G1051600 Malus domestica HOM05D004791 ORTHO05D005637 2.3e-80 302.8 241 65.1
Potri.001G222300 Populus trichocarpa HOM05D004791 ORTHO05D005637 3.0e-80 302.4 245 62.9
SGA_v2.0_scaffold8G04482 Striga asiatica HOM05D004791 ORTHO05D005637 3.0e-80 302.4 235 62.6
Aqoxy2G04139 Aquilegia oxysepala HOM05D004791 ORTHO05D005637 6.6e-80 301.2 244 61.1
TWI79G1652 Tripterygium wilfordii HOM05D004791 ORTHO05D005637 6.6e-80 301.2 215 70.7
CSS0026131 Camellia sinensis var. sinensis HOM05D004791 ORTHO05D005637 8.6e-80 300.8 243 62.1
Ca_06167_v3 Cicer arietinum L. HOM05D004791 ORTHO05D005637 1.1e-79 300.4 235 61.3
Ca_06184_v3 Cicer arietinum L. HOM05D004791 ORTHO05D005637 1.1e-79 300.4 235 61.3
Migut.D00780 Erythranthe guttata HOM05D004791 ORTHO05D005637 1.5e-79 300.1 247 61.1
Lalb_Chr04g0249541 Lupinus albus HOM05D004791 ORTHO05D005637 1.5e-79 300.1 237 62.9
CSS0033533 Camellia sinensis var. sinensis HOM05D004791 ORTHO05D005637 1.9e-79 299.7 243 61.7
AUR62002934 Chenopodium quinoa HOM05D004791 ORTHO05D005637 1.9e-79 299.7 247 61.5
Lalb_Chr04g0249551 Lupinus albus HOM05D004791 ORTHO05D005637 1.9e-79 299.7 237 62.4
Cfa010279 Carpinus fangiana HOM05D004791 ORTHO05D005637 2.5e-79 299.3 251 61.4
AUR62007743 Chenopodium quinoa HOM05D004791 ORTHO05D005637 2.5e-79 299.3 248 61.3
FAN16G2039 Fragaria x ananassa HOM05D004791 ORTHO05D005637 3.3e-79 298.9 232 64.7
VMungo0647G0403 Vigna mungo HOM05D004791 ORTHO05D005637 3.3e-79 298.9 238 63.4
ClCG02G024120 Citrullus lanatus HOM05D004791 ORTHO05D005637 5.6e-79 298.1 250 63.2
MELO3C014695.2 Cucumis melo HOM05D004791 ORTHO05D005637 5.6e-79 298.1 247 63.6
CsaV3_4G023210 Cucumis sativus L. HOM05D004791 ORTHO05D005637 5.6e-79 298.1 250 62.8
Eucgr.B03774 Eucalyptus grandis HOM05D004791 ORTHO05D005637 7.3e-79 297.7 247 60.3
Sed0001715 Sechium edule HOM05D004791 ORTHO05D005637 7.3e-79 297.7 250 62.8
Sc15g0007330 Simmondsia chinensis HOM05D004791 ORTHO05D005637 9.5e-79 297.4 244 63.5
Peaxi162Scf00390g00128 Petunia axillaris HOM05D004791 ORTHO05D005637 1.2e-78 297.0 246 62.6
CAN.G874.52 Capsicum annuum HOM05D004791 ORTHO05D005637 1.6e-78 296.6 228 63.6
Gorai.013G266500 Gossypium raimondii HOM05D004791 ORTHO05D005637 2.8e-78 295.8 246 59.3
DCAR_018598 Daucus carota HOM05D004791 ORTHO05D005637 3.6e-78 295.4 248 61.3
Dinv28770 Davidia involucrata HOM05D004791 ORTHO05D005637 4.7e-78 295.0 208 67.3
Glyma.14G040400 Glycine max HOM05D004791 ORTHO05D005637 4.7e-78 295.0 238 62.2
Gohir.A13G230300 Gossypium hirsutum HOM05D004791 ORTHO05D005637 4.7e-78 295.0 219 63.0
EL10Ac6g14521 Beta vulgaris HOM05D004791 ORTHO05D005637 8.0e-78 294.3 241 61.8
Glyma.02G275700 Glycine max HOM05D004791 ORTHO05D005637 1.0e-77 293.9 238 63.0
Atru.chr3.2946 Acer truncatum HOM05D004791 ORTHO05D005637 1.4e-77 293.5 230 63.0
Hma1.2p1_1631F.1_g294630 Hydrangea macrophylla HOM05D004791 ORTHO05D005637 1.4e-77 293.5 250 61.6
CiPaw.13G121900 Carya illinoinensis HOM05D004791 ORTHO05D005637 2.3e-77 292.7 182 75.8
PGSC0003DMG400027664 Solanum tuberosum HOM05D004791 ORTHO05D005637 3.1e-77 292.4 230 63.0
Solyc06g082810.3 Solanum lycopersicum HOM05D004791 ORTHO05D005637 4.0e-77 292.0 230 63.0
Thecc.09G339600 Theobroma cacao HOM05D004791 ORTHO05D005637 4.0e-77 292.0 247 59.1
Medtr5g088337 Medicago truncatula HOM05D004791 ORTHO05D005637 6.8e-77 291.2 236 61.0
Ciclev10016367m.g Citrus clementina HOM05D004791 ORTHO05D005637 8.9e-77 290.8 179 74.9
Nitab4.5_0008751g0050 Nicotiana tabacum HOM05D004791 ORTHO05D005637 1.2e-76 290.4 246 61.0
Sopen06g034170 Solanum pennellii HOM05D004791 ORTHO05D005637 1.2e-76 290.4 230 62.6
PSO675G0111 Papaver somniferum HOM05D004791 ORTHO05D005637 2.0e-76 289.7 181 73.5
Nitab4.5_0000539g0030 Nicotiana tabacum HOM05D004791 ORTHO05D005637 2.6e-76 289.3 241 60.2
PSO732G0764 Papaver somniferum HOM05D004791 ORTHO05D005637 2.6e-76 289.3 181 73.5
unitig_0.g222 Utricularia gibba HOM05D006455 ORTHO05D008098 5.8e-76 288.1 232 61.6
Nitab4.5_0004383g0040 Nicotiana tabacum HOM05D004791 ORTHO05D005637 7.5e-76 287.7 194 68.6
Migut.N00694 Erythranthe guttata HOM05D004791 ORTHO05D005637 1.3e-75 287.0 221 65.2
vmacro14664 Vaccinium macrocarpon HOM05D004791 ORTHO05D005637 4.9e-75 285.0 264 57.6
vmacro02852 Vaccinium macrocarpon HOM05D004791 ORTHO05D005637 1.9e-74 283.1 266 56.4
Nitab4.5_0001348g0240 Nicotiana tabacum HOM05D004791 ORTHO05D005637 5.4e-74 281.6 249 58.6
Sopen09g012370 Solanum pennellii HOM05D004791 ORTHO05D005637 9.2e-74 280.8 242 60.7
TAR633G0334 Trochodendron aralioides HOM05D004791 ORTHO05D005637 1.2e-73 280.4 284 54.6
Lsat_1_v5_gn_9_15660 Lactuca sativa HOM05D004791 ORTHO05D005637 1.7e-72 276.6 242 60.3
CDE08G0165 Ceratophyllum demersum HOM05D004791 ORTHO05D005637 3.3e-71 272.3 249 55.8
Zm00001eb240820 Zea mays HOM05D004791 ORTHO05D005637 9.5e-71 270.8 246 57.3
CDE09G0384 Ceratophyllum demersum HOM05D004791 ORTHO05D005637 1.6e-70 270.0 197 65.0
Nitab4.5_0000105g0450 Nicotiana tabacum HOM05D004791 ORTHO05D005637 4.7e-70 268.5 267 55.1
Os02g0465500 Oryza sativa ssp. japonica HOM05D004791 ORTHO05D005637 4.7e-70 268.5 244 56.1
Cc01_g15680 Coffea canephora HOM05D004791 ORTHO05D005637 1.1e-69 267.3 168 72.6
Prupe.2G051000 Prunus persica HOM05D004791 ORTHO05D005637 3.1e-69 265.8 167 76.0
Lj2A1108T30 Lonicera japonica HOM05D004791 ORTHO05D005637 2.6e-68 262.7 341 46.9
SEGI_38815 Sequoiadendron giganteum HOM05D004791 ORTHO05D005637 4.4e-68 261.9 247 54.7
SEGI_08759 Sequoiadendron giganteum HOM05D004791 ORTHO05D005637 1.4e-66 256.9 180 66.7
Phvul.008G205900 Phaseolus vulgaris HOM05D004791 ORTHO05D005637 7.8e-65 251.1 201 63.2
Prupe.2G053500 Prunus persica HOM05D004791 ORTHO05D005637 6.6e-64 248.1 212 62.3
ECA247G3547 Erigeron canadensis HOM05D004791 ORTHO05D005637 4.3e-63 245.4 181 65.7
Mapoly0089s0044 Marchantia polymorpha HOM05D004791 ORTHO05D005637 7.3e-63 244.6 232 53.4
HanXRQChr08g0230971 Helianthus annuus HOM05D004791 ORTHO05D005637 1.4e-61 240.4 182 64.8
HanXRQChr08g0230941 Helianthus annuus HOM05D004791 ORTHO05D005637 2.3e-61 239.6 182 64.8
SMO361G0388 Selaginella moellendorffii HOM05D004791 ORTHO05D005637 4.4e-60 235.3 206 56.3
COL.COLO4_18343 Corchorus olitorius HOM05D004791 ORTHO05D005637 2.2e-59 233.0 239 52.3
Pp3c15_14440 Physcomitrium patens HOM05D004791 ORTHO05D005637 2.9e-59 232.6 245 51.4
HPP92_004836 Vanilla planifolia HOM05D004791 ORTHO05D005637 3.7e-59 232.3 170 64.7
Rhsim11G0123600 Rhododendron simsii HOM05D004791 ORTHO05D005637 1.6e-57 226.9 249 53.8
ATR0661G342 Amborella trichopoda HOM05D004791 ORTHO05D005637 6.0e-57 224.9 143 71.3
Duzib168G2260 Durio zibethinus HOM05D004791 ORTHO05D005637 1.3e-56 223.8 164 64.0
Peaxi162Scf00293g00320 Petunia axillaris HOM05D004791 ORTHO05D005637 7.3e-55 218.0 142 69.7
HPP92_004833 Vanilla planifolia HOM05D004791 ORTHO05D005637 2.1e-54 216.5 161 63.4
Pp3c9_12520 Physcomitrium patens HOM05D004791 ORTHO05D005637 4.0e-53 212.2 189 55.0
CANSAT54G2396 Cannabis sativa HOM05D004791 ORTHO05D005637 7.1e-50 201.4 192 57.3
Psat2g021120 Pisum sativum HOM05D004791 ORTHO05D005637 1.2e-49 200.7 169 60.9
MBI06_g07515_MAGBIO Magnolia biondii HOM05D004791 ORTHO05D005637 1.0e-48 197.6 182 58.8
Cre10.g425800 Chlamydomonas reinhardtii HOM05D004791 ORTHO05D005637 1.3e-48 197.2 209 46.9
QL01p007413 Quercus lobata HOM05D004791 ORTHO05D005637 1.7e-48 196.8 129 73.6
Duzib170G0202 Durio zibethinus HOM05D004791 ORTHO05D005637 1.5e-47 193.7 177 58.2
PRCOL_00004118 Prasinoderma coloniale HOM05D004791 ORTHO05D005637 9.6e-47 191.0 209 49.3
Rhsim13G0056300 Rhododendron simsii HOM05D004791 ORTHO05D005637 9.6e-47 191.0 184 55.4
BolC9t53165H Brassica oleracea HOM05D004791 ORTHO05D005637 1.7e-40 170.2 128 67.2
Lalb_Chr04g0249561 Lupinus albus HOM05D004791 ORTHO05D005637 5.6e-39 165.2 113 68.1
TPR.G27619 Trifolium pratense HOM05D004791 ORTHO05D005637 3.6e-38 162.5 146 57.5
C09p02340 Brassica napus HOM05D004791 ORTHO05D005637 6.4e-35 151.8 115 68.7
Dinv00703 Davidia involucrata HOM05D004791 ORTHO05D005637 6.4e-35 151.8 195 46.7
Solyc09g018760.2 Solanum lycopersicum HOM05D004791 ORTHO05D005637 6.4e-35 151.8 146 54.8
Haze_23696 Corylus avellana HOM05D004791 ORTHO05D005637 8.4e-35 151.4 86 80.2
BcaC04g24021 Brassica carinata HOM05D004791 ORTHO05D005637 1.1e-34 151.0 117 66.7
Dinv18272 Davidia involucrata HOM05D004791 ORTHO05D005637 4.2e-34 149.1 154 51.9
Nn7g38012 Nelumbo nucifera HOM05D004791 ORTHO05D005637 5.5e-34 148.7 157 52.2
FAN11G2354 Fragaria x ananassa HOM05D004791 ORTHO05D005637 1.6e-33 147.1 166 51.8
Cfa021416 Carpinus fangiana HOM05D004791 ORTHO05D005637 1.3e-32 144.1 178 44.4
Solyc09g018780.4 Solanum lycopersicum HOM05D004791 ORTHO05D005637 1.3e-32 144.1 97 71.1
C03p32150 Brassica napus HOM05D004791 ORTHO05D005637 1.6e-30 137.1 130 58.5
BolC3t15557H Brassica oleracea HOM05D004791 ORTHO05D005637 1.6e-30 137.1 130 58.5
TPR.G11322 Trifolium pratense HOM05D004791 ORTHO05D005637 2.1e-30 136.7 97 63.9
MSTRG.18521 Avicennia marina HOM05D004791 ORTHO05D005637 1.5e-28 130.6 124 54.0
AL1G12420 Arabidopsis lyrata HOM05D004791 ORTHO05D005637 5.8e-28 128.6 66 97.0
HanXRQChr08g0230961 Helianthus annuus HOM05D004791 ORTHO05D005637 8.2e-22 108.2 67 73.1
HanXRQChr08g0230891 Helianthus annuus HOM05D004791 ORTHO05D005637 1.1e-21 107.8 205 34.6
MBI06_g07516_MAGBIO Magnolia biondii HOM05D004791 ORTHO05D005637 1.7e-19 100.5 79 62.0
DCAR_012715 Daucus carota HOM05D004791 ORTHO05D005637 7.4e-15 85.1 64 62.5
Peaxi162Scf01280g00024 Petunia axillaris HOM05D004791 ORTHO05D005637 2.8e-14 83.2 123 44.7
Gohir.D04G099150 Gossypium hirsutum HOM05D004791 ORTHO05D005637 4.8e-14 82.4 84 58.3
HanXRQChr08g0230951 Helianthus annuus HOM05D004791 ORTHO05D005637 1.1e-13 81.3 66 56.1
Gorai.013G056800 Gossypium raimondii HOM05D004791 ORTHO05D005637 5.9e-12 75.5 84 54.8
Os04g0303950 Oryza sativa ssp. japonica HOM05D004791 ORTHO05D005637 1.7e-11 73.9 105 46.7
DCAR_012716 Daucus carota HOM05D004791 ORTHO05D005637 2.2e-11 73.6 61 55.7


User provided reference genes

Program Settings