Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL4G20180 Arabidopsis lyrata HOM05D012084 ORTHO05D000630 6.7e-133 477.6 291 100.0
Carub.0003s1290 Capsella rubella HOM05D012084 ORTHO05D000630 1.8e-90 336.7 306 66.3
AT2G26940 Arabidopsis thaliana HOM05D012084 ORTHO05D000630 2.0e-89 333.2 292 77.4
BcaB01g03035 Brassica carinata HOM05D012084 ORTHO05D000630 5.4e-66 255.4 244 61.1
CARHR119210 Cardamine hirsuta HOM05D012084 ORTHO05D000630 5.4e-66 255.4 259 61.8
Sp4g08400 Schrenkiella parvula HOM05D012084 ORTHO05D000630 3.5e-65 252.7 246 65.9
CARHR119110 Cardamine hirsuta HOM05D012084 ORTHO05D000630 1.1e-63 247.7 253 62.1
Thhalv10002171m.g Eutrema salsugineum HOM05D012084 ORTHO05D000630 5.6e-63 245.4 248 62.1
BolC4t23958H Brassica oleracea HOM05D012084 ORTHO05D000630 1.3e-51 207.6 234 56.0
BcaC02g10848 Brassica carinata HOM05D012084 ORTHO05D000630 1.6e-46 190.7 234 53.8
C04p24550 Brassica napus HOM05D012084 ORTHO05D000630 1.6e-46 190.7 234 53.8
BcaB02g10056 Brassica carinata HOM05D012084 ORTHO05D000630 1.2e-41 174.5 236 56.8
A07p17920 Brassica napus HOM05D012084 ORTHO05D000630 6.6e-40 168.7 234 53.4
BraA07t29510Z Brassica rapa HOM05D012084 ORTHO05D000630 6.8e-37 158.7 234 52.1
THA.LOC104827413 Tarenaya hassleriana HOM05D012084 ORTHO05D000630 2.7e-33 146.7 267 46.8
Gohir.D07G123350 Gossypium hirsutum HOM05D008543 ORTHO05D000630 1.7e-19 100.9 110 45.5
Gorai.001G133100 Gossypium raimondii HOM05D008543 ORTHO05D000630 1.7e-19 100.9 110 45.5
Gohir.A07G119050 Gossypium hirsutum HOM05D008543 ORTHO05D000630 2.9e-19 100.1 108 42.6
Thecc.09G250700 Theobroma cacao HOM05D008543 ORTHO05D000630 4.9e-19 99.4 114 45.6
Duzib170G0186 Durio zibethinus HOM05D008543 ORTHO05D000630 2.7e-17 93.6 111 43.2
Gohir.A08G009700 Gossypium hirsutum HOM05D008543 ORTHO05D000630 2.7e-17 93.6 109 41.3
Gohir.D08G019750 Gossypium hirsutum HOM05D008543 ORTHO05D000630 2.7e-17 93.6 109 41.3
Gorai.004G014300 Gossypium raimondii HOM05D008543 ORTHO05D000630 2.7e-17 93.6 109 41.3
QL07p014639 Quercus lobata HOM05D008543 ORTHO05D000630 3.5e-17 93.2 111 43.2
Duzib150G0090 Durio zibethinus HOM05D008543 ORTHO05D000630 1.3e-16 91.3 113 40.7
Duzib168G2176 Durio zibethinus HOM05D008543 ORTHO05D000630 1.3e-16 91.3 122 39.3
Glyma.13G073300 Glycine max HOM05D022580 ORTHO05D000630 2.3e-16 90.5 118 42.4
Manes.01G176050 Manihot esculenta HOM05D049795 ORTHO05D000630 6.7e-16 89.0 109 49.5
Nitab4.5_0003570g0030 Nicotiana tabacum HOM05D008543 ORTHO05D000630 1.1e-15 88.2 107 43.0
HanXRQChr03g0079361 Helianthus annuus HOM05D000174 ORTHO05D000630 1.5e-15 87.8 106 45.3
Oeu052885.1 Olea europaea HOM05D008543 ORTHO05D000630 1.5e-15 87.8 109 44.0
Potri.001G224600 Populus trichocarpa HOM05D008543 ORTHO05D000630 1.5e-15 87.8 117 43.6
Sabra16G0133300 Salix brachista HOM05D008543 ORTHO05D000630 2.5e-15 87.0 113 46.0
COL.COLO4_33268 Corchorus olitorius HOM05D008543 ORTHO05D000630 5.6e-15 85.9 117 40.2
THA.LOC104817725 Tarenaya hassleriana HOM05D000174 ORTHO05D000630 7.4e-15 85.5 104 42.3
Dinv40916 Davidia involucrata HOM05D008543 ORTHO05D000630 1.6e-14 84.3 101 43.6
Glyma.20G047500 Glycine max HOM05D022580 ORTHO05D000630 1.6e-14 84.3 109 41.3
Oeu032035.1 Olea europaea HOM05D011325 ORTHO05D000630 2.8e-14 83.6 105 41.9
Thhalv10015446m.g Eutrema salsugineum HOM05D000174 ORTHO05D000630 3.7e-14 83.2 104 38.5
Oeu052027.2 Olea europaea HOM05D000784 ORTHO05D000116 3.7e-14 83.2 111 42.3
Actinidia30352 Actinidia chinensis HOM05D008543 ORTHO05D000630 4.8e-14 82.8 100 42.0
AL8G31830 Arabidopsis lyrata HOM05D000174 ORTHO05D000630 4.8e-14 82.8 104 42.3
MD11G1046000 Malus domestica HOM05D000174 ORTHO05D000630 4.8e-14 82.8 123 38.2
AT5G56200 Arabidopsis thaliana HOM05D000174 ORTHO05D000630 6.2e-14 82.4 104 42.3
Peaxi162Scf00234g00042 Petunia axillaris HOM05D000174 ORTHO05D000630 8.1e-14 82.0 104 42.3
C09p47440 Brassica napus HOM05D000174 ORTHO05D000630 1.1e-13 81.6 103 38.8
BcaB08g35982 Brassica carinata HOM05D000174 ORTHO05D000630 1.4e-13 81.3 104 40.4
Nitab4.5_0000152g0060 Nicotiana tabacum HOM05D008543 ORTHO05D000630 1.4e-13 81.3 104 41.3
Nn1g07630 Nelumbo nucifera HOM05D000174 ORTHO05D000630 1.8e-13 80.9 105 41.9
HanXRQChr13g0409261 Helianthus annuus HOM05D000174 ORTHO05D000630 2.4e-13 80.5 103 41.7
Oeu025932.1 Olea europaea HOM05D011325 ORTHO05D000630 2.4e-13 80.5 105 41.0
PGSC0003DMG400022147 Solanum tuberosum HOM05D008543 ORTHO05D000630 2.4e-13 80.5 105 40.0
DCAR_017611 Daucus carota HOM05D000174 ORTHO05D000630 3.1e-13 80.1 108 38.0
Nitab4.5_0000205g0040 Nicotiana tabacum HOM05D059491 ORTHO05D000630 3.1e-13 80.1 111 40.5
BcaC04g20137 Brassica carinata HOM05D000174 ORTHO05D000630 4.0e-13 79.7 102 38.2
BolC9t57599H Brassica oleracea HOM05D000174 ORTHO05D000630 4.0e-13 79.7 102 38.2
Eucgr.F03645 Eucalyptus grandis HOM05D008543 ORTHO05D000630 4.0e-13 79.7 100 40.0
SGA_v2.0_scaffold7G03548 Striga asiatica HOM05D008543 ORTHO05D000630 4.0e-13 79.7 105 43.8
Carub.0008s1652 Capsella rubella HOM05D000174 ORTHO05D000630 5.3e-13 79.3 102 39.2
A10p13430 Brassica napus HOM05D000174 ORTHO05D000630 6.9e-13 79.0 102 38.2
BraA10t43446Z Brassica rapa HOM05D000174 ORTHO05D000630 6.9e-13 79.0 102 38.2
Oeu032036.1 Olea europaea HOM05D011325 ORTHO05D000630 9.0e-13 78.6 105 37.1
Peaxi162Scf00232g00062 Petunia axillaris HOM05D008543 ORTHO05D000630 9.0e-13 78.6 106 41.5
Prupe.6G035400 Prunus persica HOM05D000174 ORTHO05D000630 9.0e-13 78.6 119 39.5
THA.LOC104811702 Tarenaya hassleriana HOM05D000174 ORTHO05D000630 9.0e-13 78.6 102 40.2
Sp6g18050 Schrenkiella parvula HOM05D000174 ORTHO05D000630 1.2e-12 78.2 104 41.3
Haze_09916 Corylus avellana HOM05D000174 ORTHO05D000630 2.0e-12 77.4 100 43.0
CSS0027724 Camellia sinensis var. sinensis HOM05D008543 ORTHO05D000630 2.6e-12 77.0 100 43.0
CAN.G1085.7 Capsicum annuum HOM05D000174 ORTHO05D000630 2.6e-12 77.0 118 36.4
CARHR269600 Cardamine hirsuta HOM05D000174 ORTHO05D000630 2.6e-12 77.0 103 41.7
Nitab4.5_0009408g0010 Nicotiana tabacum HOM05D008543 ORTHO05D000630 3.4e-12 76.6 104 41.3
Cpa.g.sc12.67 Carica papaya HOM05D000174 ORTHO05D000630 4.5e-12 76.3 102 40.2
Phvul.006G020000 Phaseolus vulgaris HOM05D022580 ORTHO05D000630 4.5e-12 76.3 102 41.2
TAR636G0894 Trochodendron aralioides HOM05D008543 ORTHO05D000630 4.5e-12 76.3 101 42.6
CAN.G623.74 Capsicum annuum HOM05D008543 ORTHO05D000630 5.8e-12 75.9 104 40.4
Lsat_1_v5_gn_9_88600 Lactuca sativa HOM05D000174 ORTHO05D000630 5.8e-12 75.9 116 42.2
Oeu006263.1 Olea europaea HOM05D008543 ORTHO05D000630 5.8e-12 75.9 108 40.7
VMungo0540G2495 Vigna mungo HOM05D022580 ORTHO05D000630 7.6e-12 75.5 100 42.0
CSS0016853 Camellia sinensis var. sinensis HOM05D000174 ORTHO05D000630 1.0e-11 75.1 100 40.0
CSS0041839 Camellia sinensis var. sinensis HOM05D008543 ORTHO05D000630 1.0e-11 75.1 100 40.0
Nn1g07631 Nelumbo nucifera HOM05D000174 ORTHO05D000630 1.0e-11 75.1 101 40.6
Sc16g0010820 Simmondsia chinensis HOM05D008543 ORTHO05D000630 1.0e-11 75.1 115 38.3
Cc01_g06930 Coffea canephora HOM05D000174 ORTHO05D000630 1.3e-11 74.7 112 38.4
arahy.Tifrunner.gnm1.ann1.YK7I6N Arachis hypogaea HOM05D008543 ORTHO05D000630 1.7e-11 74.3 106 40.6
MD03G1043000 Malus domestica HOM05D000174 ORTHO05D000630 1.7e-11 74.3 117 40.2
QL08p000516 Quercus lobata HOM05D000174 ORTHO05D000630 1.7e-11 74.3 110 37.3
Rhsim06G0235100 Rhododendron simsii HOM05D000174 ORTHO05D000630 1.7e-11 74.3 100 43.0
Cfa016961 Carpinus fangiana HOM05D000174 ORTHO05D000630 2.2e-11 73.9 99 42.4
CiPaw.11G210700 Carya illinoinensis HOM05D000174 ORTHO05D000630 2.2e-11 73.9 100 39.0
CiPaw.13G145600 Carya illinoinensis HOM05D019813 ORTHO05D000630 2.2e-11 73.9 115 37.4
RcHm_v2.0_Chr5g0074621 Rosa chinensis HOM05D000174 ORTHO05D000630 2.2e-11 73.9 111 40.5
GSVIVG01014844001 Vitis vinifera HOM05D000174 ORTHO05D000630 2.2e-11 73.9 100 37.0
Phvul.003G273600 Phaseolus vulgaris HOM05D008543 ORTHO05D000630 2.9e-11 73.6 103 39.8
SGA_v2.0_scaffold11G05961 Striga asiatica HOM05D010587 ORTHO05D000630 2.9e-11 73.6 104 40.4
Prupe.6G093500 Prunus persica HOM05D025829 ORTHO05D000630 6.5e-11 72.4 100 39.0
Atru.chr2.3896 Acer truncatum HOM05D000174 ORTHO05D000630 8.4e-11 72.0 107 41.1
ECA240G0792 Erigeron canadensis HOM05D000174 ORTHO05D000630 1.1e-10 71.6 122 35.2
Cc05_g15710 Coffea canephora HOM05D000174 ORTHO05D000630 1.4e-10 71.2 100 41.0
QL01p020579 Quercus lobata HOM05D008543 ORTHO05D000630 1.4e-10 71.2 100 35.0
SGA_v2.0_scaffold79G25559 Striga asiatica HOM05D011325 ORTHO05D000630 1.4e-10 71.2 106 36.8
FAN16G0761 Fragaria x ananassa HOM05D000174 ORTHO05D000630 1.9e-10 70.9 112 40.2
Lalb_Chr17g0347691 Lupinus albus HOM05D008543 ORTHO05D000630 1.9e-10 70.9 105 39.0
FAN25G3117 Fragaria x ananassa HOM05D000174 ORTHO05D000630 2.5e-10 70.5 116 38.8
FAN21G0599 Fragaria x ananassa HOM05D000174 ORTHO05D000630 3.2e-10 70.1 116 39.7
ATR1101G089 Amborella trichopoda HOM05D010587 ORTHO05D000630 4.2e-10 69.7 105 32.4
FvH4_3g41600 Fragaria vesca HOM05D000174 ORTHO05D000630 4.2e-10 69.7 116 39.7
FAN11G0349 Fragaria x ananassa HOM05D000174 ORTHO05D000630 4.2e-10 69.7 116 39.7
ATR0874G001 Amborella trichopoda HOM05D010587 ORTHO05D000630 5.5e-10 69.3 105 33.3
arahy.Tifrunner.gnm1.ann1.1FA9DV Arachis hypogaea HOM05D008543 ORTHO05D000630 5.5e-10 69.3 108 40.7
MD03G1110900 Malus domestica HOM05D025829 ORTHO05D000630 5.5e-10 69.3 100 36.0
PGSC0003DMG400034376 Solanum tuberosum HOM05D000174 ORTHO05D000630 5.5e-10 69.3 104 37.5
DCAR_013757 Daucus carota HOM05D000174 ORTHO05D000630 7.1e-10 68.9 109 36.7
Sopen10g025660 Solanum pennellii HOM05D011325 ORTHO05D000630 9.3e-10 68.6 105 37.1
CiPaw.12G142600 Carya illinoinensis HOM05D000174 ORTHO05D000630 1.2e-09 68.2 100 38.0
Glyma.16G102000 Glycine max HOM05D008543 ORTHO05D000630 1.2e-09 68.2 223 30.0
Psat1g077000 Pisum sativum HOM05D008543 ORTHO05D000630 1.2e-09 68.2 265 30.2
ATR0069G047 Amborella trichopoda HOM05D010587 ORTHO05D000630 1.6e-09 67.8 105 32.4
Lalb_Chr15g0080221 Lupinus albus HOM05D008543 ORTHO05D000630 1.6e-09 67.8 104 40.4
Potri.004G118100 Populus trichocarpa HOM05D001658 ORTHO05D001406 2.7e-09 67.0 104 34.6
Oeu025931.1 Olea europaea HOM05D011325 ORTHO05D000630 3.5e-09 66.6 108 35.2
Aqoxy4G02266 Aquilegia oxysepala HOM05D000174 ORTHO05D000630 4.6e-09 66.2 118 33.1
Ciclev10007805m.g Citrus clementina HOM05D000174 ORTHO05D000630 4.6e-09 66.2 103 35.0
TWI75G0649 Tripterygium wilfordii HOM05D008543 ORTHO05D000630 4.6e-09 66.2 100 39.0
TPR.G11948 Trifolium pratense HOM05D008543 ORTHO05D000630 6.0e-09 65.9 104 36.5
EL10Ac4g10054 Beta vulgaris HOM05D008543 ORTHO05D000630 7.9e-09 65.5 105 37.1
Migut.M01582 Erythranthe guttata HOM05D008543 ORTHO05D000630 1.3e-08 64.7 105 38.1
Oeu032037.1 Olea europaea HOM05D011325 ORTHO05D000630 1.3e-08 64.7 105 34.3
Sopen10g026890 Solanum pennellii HOM05D011325 ORTHO05D000630 1.3e-08 64.7 105 36.2
Solyc11g072210.1 Solanum lycopersicum HOM05D000174 ORTHO05D000630 1.8e-08 64.3 118 33.9
Sopen11g029860 Solanum pennellii HOM05D000174 ORTHO05D000630 1.8e-08 64.3 117 33.3
CiPaw.13G145500 Carya illinoinensis HOM05D008543 ORTHO05D000630 2.3e-08 63.9 106 38.7
MD11G1124800 Malus domestica HOM05D025829 ORTHO05D000630 2.3e-08 63.9 100 35.0
ATR0751G124 Amborella trichopoda HOM05D010587 ORTHO05D001526 3.0e-08 63.5 105 33.3
ATR1128G063 Amborella trichopoda HOM05D010587 ORTHO05D000630 3.9e-08 63.2 107 31.8
CANSAT54G2384 Cannabis sativa HOM05D008543 ORTHO05D000630 6.7e-08 62.4 104 31.7
BcaB05g22249 Brassica carinata HOM05D000174 ORTHO05D000630 8.7e-08 62.0 103 34.0
CDE03G0095 Ceratophyllum demersum HOM05D056667 ORTHO05D000630 8.7e-08 62.0 91 35.2
PGR119G0147 Punica granatum HOM05D000174 ORTHO05D000630 8.7e-08 62.0 121 30.6
VMungo0251G2315 Vigna mungo HOM05D008543 ORTHO05D000630 8.7e-08 62.0 101 36.6
Lj8C183G11 Lonicera japonica HOM05D000174 ORTHO05D000630 1.5e-07 61.2 49 53.1
ATR1101G107 Amborella trichopoda HOM05D010587 ORTHO05D001526 2.5e-07 60.5 100 31.0
CiPaw.03G090600 Carya illinoinensis HOM05D001658 ORTHO05D001406 2.5e-07 60.5 101 35.6
Migut.N02396 Erythranthe guttata HOM05D000174 ORTHO05D000630 2.5e-07 60.5 104 33.7
MBI14_g12738_MAGBIO Magnolia biondii HOM05D000174 ORTHO05D000630 3.3e-07 60.1 48 52.1
Oeu048888.1 Olea europaea HOM05D008569 ORTHO05D026372 3.3e-07 60.1 41 56.1
MELO3C018946.2 Cucumis melo HOM05D001658 ORTHO05D001406 4.3e-07 59.7 99 33.3
CsaV3_4G008830 Cucumis sativus L. HOM05D001658 ORTHO05D001406 4.3e-07 59.7 99 33.3
MBI15_g44395_MAGBIO Magnolia biondii HOM05D000174 ORTHO05D000630 4.3e-07 59.7 109 33.0
BcaB03g14075 Brassica carinata HOM05D001658 ORTHO05D001406 5.7e-07 59.3 89 30.3
Peaxi162Scf00106g00091 Petunia axillaris HOM05D001658 ORTHO05D001406 5.7e-07 59.3 102 34.3
Cfa007641 Carpinus fangiana HOM05D001658 ORTHO05D001406 7.4e-07 58.9 105 35.2
CsaV3_3G003770 Cucumis sativus L. HOM05D014059 ORTHO05D001526 7.4e-07 58.9 195 25.1
Lj6g0021794 Lotus japonicus HOM05D000085 ORTHO05D015977 7.4e-07 58.9 113 35.4
Manes.02G053200 Manihot esculenta HOM05D001658 ORTHO05D001406 7.4e-07 58.9 104 33.7
QL02p039229 Quercus lobata HOM05D001658 ORTHO05D001406 7.4e-07 58.9 110 35.5
Sabra04G0068300 Salix brachista HOM05D001658 ORTHO05D001406 7.4e-07 58.9 101 33.7
MELO3C014059.2 Cucumis melo HOM05D014059 ORTHO05D001526 1.3e-06 58.2 35 60.0
Pp3c18_22010 Physcomitrium patens HOM05D000174 ORTHO05D001526 1.3e-06 58.2 104 34.6
Pp3c22_2200 Physcomitrium patens HOM05D000174 ORTHO05D001526 1.3e-06 58.2 107 32.7
QL11p055621 Quercus lobata HOM05D000174 ORTHO05D001526 1.3e-06 58.2 124 29.8
QL11p055917 Quercus lobata HOM05D000174 ORTHO05D001526 1.3e-06 58.2 124 29.8
unitig_26.g10291 Utricularia gibba HOM05D001658 ORTHO05D001406 1.3e-06 58.2 180 26.7
Mapoly0011s0122 Marchantia polymorpha HOM05D010587 ORTHO05D001526 1.6e-06 57.8 104 30.8
HPP92_012301 Vanilla planifolia HOM05D001658 ORTHO05D001406 1.6e-06 57.8 106 34.0
CDE02G3608 Ceratophyllum demersum HOM05D000174 ORTHO05D001526 2.1e-06 57.4 33 60.6
Pp3c19_21390 Physcomitrium patens HOM05D000174 ORTHO05D001526 2.1e-06 57.4 104 32.7
Pp3c21_440 Physcomitrium patens HOM05D000174 ORTHO05D001526 2.1e-06 57.4 106 34.0
TWI32G0161 Tripterygium wilfordii HOM05D001658 ORTHO05D001406 2.1e-06 57.4 100 31.0
CDE04G0195 Ceratophyllum demersum HOM05D001852 ORTHO05D001989 2.8e-06 57.0 33 60.6
Ca_12245_v3 Cicer arietinum L. HOM05D027424 ORTHO05D017834 2.8e-06 57.0 104 33.7
ClCG07G007300 Citrullus lanatus HOM05D001658 ORTHO05D001406 2.8e-06 57.0 105 31.4
Cpa.g.sc14.159 Carica papaya HOM05D001658 ORTHO05D001406 3.7e-06 56.6 106 32.1
BcaC03g14239 Brassica carinata HOM05D000997 ORTHO05D000828 4.8e-06 56.2 36 55.6
FAN14G2327 Fragaria x ananassa HOM05D001658 ORTHO05D001406 4.8e-06 56.2 101 35.6
Lj1g0000805 Lotus japonicus HOM05D000174 ORTHO05D001526 4.8e-06 56.2 38 57.9
Oeu051846.1 Olea europaea HOM05D001927 ORTHO05D001972 4.8e-06 56.2 125 31.2
Potri.017G091800 Populus trichocarpa HOM05D001658 ORTHO05D001406 4.8e-06 56.2 105 31.4
Sabra17G0080800 Salix brachista HOM05D001658 ORTHO05D001406 4.8e-06 56.2 107 29.9
Prupe.3G257500 Prunus persica HOM05D001658 ORTHO05D001406 6.2e-06 55.8 105 33.3
Actinidia10593 Actinidia chinensis HOM05D000174 ORTHO05D000630 8.2e-06 55.5 35 62.9
CANSAT56G2339 Cannabis sativa HOM05D000174 ORTHO05D001526 8.2e-06 55.5 80 35.0
CiPaw.05G091800 Carya illinoinensis HOM05D000174 ORTHO05D001526 8.2e-06 55.5 87 34.5
Haze_02015 Corylus avellana HOM05D000174 ORTHO05D001526 8.2e-06 55.5 80 38.8
Migut.H02203 Erythranthe guttata HOM05D008569 ORTHO05D010111 8.2e-06 55.5 34 58.8


User provided reference genes

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