Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL4G19610 Arabidopsis lyrata HOM05D004248 ORTHO05D004978 0.0e+00 1722.6 873 100.0
Sp6g36500 Schrenkiella parvula HOM05D004248 ORTHO05D004978 0.0e+00 1184.5 888 72.7
AT5G06350 Arabidopsis thaliana HOM05D004248 ORTHO05D004978 0.0e+00 1177.2 886 72.9
Carub.0006s0524 Capsella rubella HOM05D004248 ORTHO05D004978 0.0e+00 1164.4 886 72.0
Thhalv10012647m.g Eutrema salsugineum HOM05D004248 ORTHO05D004978 0.0e+00 1145.2 886 71.6
AL6G38940 Arabidopsis lyrata HOM05D004248 ORTHO05D004978 0.0e+00 1132.5 882 71.9
CARHR207090 Cardamine hirsuta HOM05D004248 ORTHO05D004978 0.0e+00 1125.9 884 70.4
AT5G27010 Arabidopsis thaliana HOM05D004248 ORTHO05D004978 0.0e+00 1119.0 884 71.0
BraA10t45042Z Brassica rapa HOM05D004248 ORTHO05D004978 0.0e+00 1089.3 891 67.6
A10p30020 Brassica napus HOM05D004248 ORTHO05D004978 0.0e+00 1087.4 891 67.3
BcaC06g32369 Brassica carinata HOM05D004248 ORTHO05D004978 0.0e+00 1082.0 890 67.1
BolC9t59789H Brassica oleracea HOM05D004248 ORTHO05D004978 0.0e+00 1080.5 890 67.1
C09p70430 Brassica napus HOM05D004248 ORTHO05D004978 0.0e+00 1078.9 890 67.1
BcaNung06319 Brassica carinata HOM05D004248 ORTHO05D004978 0.0e+00 1077.4 892 67.2
Aa31sc52G180 Aethionema arabicum HOM05D004248 ORTHO05D004978 3.0e-311 1071.6 905 66.0
BcaB02g11156 Brassica carinata HOM05D004248 ORTHO05D004978 2.0e-281 972.6 908 62.9
THA.LOC104809952 Tarenaya hassleriana HOM05D004248 ORTHO05D004978 1.4e-271 939.9 886 58.8
AL6G16430 Arabidopsis lyrata HOM05D004248 ORTHO05D004978 6.2e-227 791.6 562 76.2
Thecc.05G104000 Theobroma cacao HOM05D004248 ORTHO05D004978 1.5e-212 743.8 883 48.8
Ciclev10011038m.g Citrus clementina HOM05D004248 ORTHO05D004978 1.0e-208 731.1 893 46.4
Gohir.A09G134400 Gossypium hirsutum HOM05D004248 ORTHO05D004978 3.8e-208 729.2 885 47.7
Gohir.D09G130900 Gossypium hirsutum HOM05D004248 ORTHO05D004978 2.1e-206 723.4 885 47.2
Gorai.006G149600 Gossypium raimondii HOM05D004248 ORTHO05D004978 2.1e-206 723.4 885 47.2
FAN09G3200 Fragaria x ananassa HOM05D004248 ORTHO05D004978 6.7e-205 718.4 890 47.0
CiPaw.10G017100 Carya illinoinensis HOM05D004248 ORTHO05D004978 1.1e-204 717.6 888 46.8
FAN14G1070 Fragaria x ananassa HOM05D004248 ORTHO05D004978 2.0e-204 716.8 885 47.3
Cfa020026 Carpinus fangiana HOM05D004248 ORTHO05D004978 5.9e-201 705.3 895 46.7
FAN05G1094 Fragaria x ananassa HOM05D004248 ORTHO05D004978 5.9e-201 705.3 890 46.3
RcHm_v2.0_Chr3g0475871 Rosa chinensis HOM05D004248 ORTHO05D004978 1.0e-200 704.5 890 46.7
FAN05G4951 Fragaria x ananassa HOM05D004248 ORTHO05D004978 1.3e-200 704.1 890 46.3
RcHm_v2.0_Chr1g0331061 Rosa chinensis HOM05D004248 ORTHO05D004978 5.0e-200 702.2 890 46.7
Atru.chr9.697 Acer truncatum HOM05D004248 ORTHO05D004978 1.1e-199 701.0 885 46.8
QL07p036804 Quercus lobata HOM05D004248 ORTHO05D004978 1.9e-199 700.3 884 45.8
Sabra06G0156800 Salix brachista HOM05D004248 ORTHO05D004978 1.7e-195 687.2 871 46.3
COL.COLO4_29580 Corchorus olitorius HOM05D004248 ORTHO05D004978 3.7e-195 686.0 895 45.8
MD10G1053900 Malus domestica HOM05D004248 ORTHO05D004978 8.2e-195 684.9 890 45.7
Potri.001G208900 Populus trichocarpa HOM05D004248 ORTHO05D004978 1.1e-191 674.5 881 44.7
Potri.011G095700 Populus trichocarpa HOM05D004248 ORTHO05D004978 1.1e-191 674.5 881 44.6
CSS0019025 Camellia sinensis var. sinensis HOM05D004248 ORTHO05D004978 2.5e-191 673.3 894 44.3
Lj1g0019866 Lotus japonicus HOM05D004248 ORTHO05D004978 1.6e-190 670.6 887 44.0
Phvul.008G104000 Phaseolus vulgaris HOM05D004248 ORTHO05D004978 8.0e-190 668.3 887 44.8
Duzib093G0037 Durio zibethinus HOM05D004248 ORTHO05D004978 1.2e-188 664.5 750 50.8
Actinidia06045 Actinidia chinensis HOM05D004248 ORTHO05D004978 5.7e-188 662.1 899 43.9
Rhsim03G0064800 Rhododendron simsii HOM05D004248 ORTHO05D004978 1.7e-187 660.6 886 44.8
Glyma.16G099100 Glycine max HOM05D004248 ORTHO05D004978 3.7e-187 659.4 885 43.5
Glyma.07G150100 Glycine max HOM05D004248 ORTHO05D004978 8.3e-187 658.3 885 43.4
FAN02G0498 Fragaria x ananassa HOM05D004248 ORTHO05D004978 3.1e-186 656.4 907 44.1
FvH4_6g20280 Fragaria vesca HOM05D004248 ORTHO05D004978 2.7e-185 653.3 836 45.6
vmacro07476 Vaccinium macrocarpon HOM05D004248 ORTHO05D004978 5.9e-185 652.1 894 44.6
Prupe.7G095000 Prunus persica HOM05D004248 ORTHO05D004978 1.7e-184 650.6 920 44.5
Manes.09G045100 Manihot esculenta HOM05D004248 ORTHO05D004978 3.8e-184 649.4 887 44.1
Manes.09G044700 Manihot esculenta HOM05D004248 ORTHO05D004978 8.5e-184 648.3 878 44.6
Eucgr.E01507 Eucalyptus grandis HOM05D004248 ORTHO05D004978 2.1e-182 643.7 882 43.2
Actinidia37744 Actinidia chinensis HOM05D004248 ORTHO05D004978 1.8e-181 640.6 932 41.8
Haze_20188 Corylus avellana HOM05D004248 ORTHO05D004978 2.3e-181 640.2 887 44.9
Oeu052620.1 Olea europaea HOM05D004248 ORTHO05D004978 9.8e-180 634.8 893 42.6
Lalb_Chr20g0111391 Lupinus albus HOM05D004248 ORTHO05D004978 1.3e-179 634.4 884 42.4
Psat3g029120 Pisum sativum HOM05D004248 ORTHO05D004978 1.4e-178 630.9 883 42.0
Nn4g22932 Nelumbo nucifera HOM05D004248 ORTHO05D004978 3.1e-178 629.8 900 41.8
Dinv31757 Davidia involucrata HOM05D004248 ORTHO05D004978 7.0e-178 628.6 892 43.5
CAN.G574.19 Capsicum annuum HOM05D004248 ORTHO05D004978 1.3e-176 624.4 897 42.6
Sopen01g003120 Solanum pennellii HOM05D004248 ORTHO05D004978 1.7e-176 624.0 893 42.8
Medtr7g106190 Medicago truncatula HOM05D004248 ORTHO05D004978 6.6e-176 622.1 883 42.1
VMungo0647G1936 Vigna mungo HOM05D004248 ORTHO05D004978 6.6e-176 622.1 896 42.0
arahy.Tifrunner.gnm1.ann1.ZDQ0NF Arachis hypogaea HOM05D004248 ORTHO05D004978 8.6e-176 621.7 861 42.5
DCAR_020706 Daucus carota HOM05D004248 ORTHO05D004978 3.3e-175 619.8 876 42.8
arahy.Tifrunner.gnm1.ann1.2W33L2 Arachis hypogaea HOM05D004248 ORTHO05D004978 4.2e-175 619.4 889 41.3
Solyc01g007140.3 Solanum lycopersicum HOM05D004248 ORTHO05D004978 7.2e-175 618.6 893 42.6
MD12G1040000 Malus domestica HOM05D004248 ORTHO05D004978 1.5e-172 610.9 957 40.1
Haze_19699 Corylus avellana HOM05D004248 ORTHO05D004978 4.9e-171 605.9 940 41.5
Dinv05301 Davidia involucrata HOM05D004248 ORTHO05D004978 6.6e-168 595.5 757 46.6
MSTRG.5896 Avicennia marina HOM05D004248 ORTHO05D004978 4.0e-165 586.3 893 40.3
Cfa016679 Carpinus fangiana HOM05D004248 ORTHO05D004978 6.8e-165 585.5 858 42.9
HanXRQChr17g0549301 Helianthus annuus HOM05D004248 ORTHO05D004978 1.2e-164 584.7 874 39.8
PSO017G5751 Papaver somniferum HOM05D004248 ORTHO05D004978 3.4e-164 583.2 892 39.6
Sc22g0002860 Simmondsia chinensis HOM05D004248 ORTHO05D004978 2.9e-163 580.1 885 40.0
PSO478G2311 Papaver somniferum HOM05D004248 ORTHO05D004978 4.9e-163 579.3 894 39.6
BcaB02g11160 Brassica carinata HOM05D004248 ORTHO05D004978 3.2e-162 576.6 563 59.7
ECA247G2914 Erigeron canadensis HOM05D004248 ORTHO05D004978 4.1e-162 576.2 883 39.0
TPR.G35565 Trifolium pratense HOM05D004248 ORTHO05D004978 1.6e-161 574.3 879 40.8
Ca_26380_v3 Cicer arietinum L. HOM05D004248 ORTHO05D004978 4.7e-158 562.8 891 39.8
Sabra01G0161200 Salix brachista HOM05D004248 ORTHO05D004978 2.0e-156 557.4 856 40.0
Aqoxy3G00875 Aquilegia oxysepala HOM05D004248 ORTHO05D004978 5.4e-154 549.3 906 37.7
EL10Ac5g12964 Beta vulgaris HOM05D004248 ORTHO05D004978 3.5e-153 546.6 903 38.3
Atru.chr8.1370 Acer truncatum HOM05D004248 ORTHO05D004978 7.8e-153 545.4 732 44.7
Migut.J00705 Erythranthe guttata HOM05D004248 ORTHO05D004978 5.1e-152 542.7 892 39.2
CANSAT01G1742 Cannabis sativa HOM05D004248 ORTHO05D004978 1.8e-149 534.3 892 38.8
PGR004G2794 Punica granatum HOM05D004248 ORTHO05D004978 4.0e-149 533.1 894 39.9
SGA_v2.0_scaffold13G06632 Striga asiatica HOM05D004248 ORTHO05D004978 5.2e-149 532.7 955 36.8
AUR62036385 Chenopodium quinoa HOM05D004248 ORTHO05D004978 2.6e-148 530.4 900 37.4
TWI74G1036 Tripterygium wilfordii HOM05D004248 ORTHO05D004978 4.9e-147 526.2 733 42.8
CsaV3_3G040150 Cucumis sativus L. HOM05D004248 ORTHO05D004978 5.4e-146 522.7 700 42.7
CDE05G1117 Ceratophyllum demersum HOM05D004248 ORTHO05D004978 6.0e-145 519.2 800 39.2
Sed0013531 Sechium edule HOM05D004248 ORTHO05D004978 2.3e-144 517.3 697 43.0
Lsat_1_v5_gn_3_1160 Lactuca sativa HOM05D004248 ORTHO05D004978 2.4e-141 507.3 886 36.8
Ca_09055_v3 Cicer arietinum L. HOM05D004248 ORTHO05D004978 1.2e-140 505.0 873 37.9
AUR62030747 Chenopodium quinoa HOM05D004248 ORTHO05D004978 3.4e-140 503.4 917 35.8
HanXRQChr06g0164371 Helianthus annuus HOM05D004248 ORTHO05D004978 5.4e-138 496.1 935 35.6
Peaxi162Scf00586g00027 Petunia axillaris HOM05D004248 ORTHO05D004978 9.3e-138 495.4 833 38.1
Hma1.2p1_0079F.1_g041850 Hydrangea macrophylla HOM05D004248 ORTHO05D004978 3.5e-137 493.4 653 45.5
RcHm_v2.0_Chr1g0331071 Rosa chinensis HOM05D004248 ORTHO05D004978 1.1e-135 488.4 669 43.6
PGR044G2629 Punica granatum HOM05D004248 ORTHO05D004978 1.9e-135 487.6 889 37.9
ClCG10G016230 Citrullus lanatus HOM05D004248 ORTHO05D004978 1.3e-126 458.4 711 40.1
GSVIVG01033953001 Vitis vinifera HOM05D004248 ORTHO05D004978 1.1e-125 455.3 640 42.2
Hund14947 Selenicereus undatus HOM05D004248 ORTHO05D004978 8.1e-118 429.1 887 33.4
MELO3C009754.2 Cucumis melo HOM05D004248 ORTHO05D004978 2.0e-116 424.5 697 38.9
HPP92_005875 Vanilla planifolia HOM05D004248 ORTHO05D004978 4.5e-116 423.3 703 38.1
Cpa.g.sc104.35 Carica papaya HOM05D004248 ORTHO05D004978 7.4e-111 406.0 554 44.0
Nitab4.5_0002858g0080 Nicotiana tabacum HOM05D004248 ORTHO05D004978 2.1e-110 404.4 637 40.5
PGR004G1886 Punica granatum HOM05D004248 ORTHO05D004978 1.4e-106 391.7 779 36.1
Cc06_g06530 Coffea canephora HOM05D004248 ORTHO05D004978 5.5e-106 389.8 642 37.7
Os04g0466700 Oryza sativa ssp. japonica HOM05D004248 ORTHO05D004978 3.7e-102 377.1 883 30.5
Ah.01g014630 Amaranthus hybridus HOM05D004248 ORTHO05D004978 3.0e-88 330.9 704 33.4
MBI13_g30330_MAGBIO Magnolia biondii HOM05D004248 ORTHO05D003073 3.9e-88 330.5 794 30.9
AL6G16420 Arabidopsis lyrata HOM05D004248 ORTHO05D004978 7.0e-85 319.7 248 71.4
unitig_8.g3983 Utricularia gibba HOM05D004248 ORTHO05D004978 2.5e-82 311.2 750 32.1
Medtr5g027350 Medicago truncatula HOM05D004248 ORTHO05D004978 7.2e-74 283.1 820 28.9
Pp3c26_11250 Physcomitrium patens HOM05D004248 ORTHO05D004978 6.3e-70 270.0 975 26.8
Pp3c26_11260 Physcomitrium patens HOM05D004248 ORTHO05D004978 6.3e-70 270.0 975 26.8
BolC5t32083H Brassica oleracea HOM05D004248 ORTHO05D004978 1.8e-69 268.5 456 39.7
Mapoly0023s0084 Marchantia polymorpha HOM05D004248 ORTHO05D004978 1.9e-66 258.5 973 26.9
Oeu036626.1 Olea europaea HOM05D004248 ORTHO05D004978 8.0e-65 253.1 242 57.0
GSVIVG01033954001 Vitis vinifera HOM05D004248 ORTHO05D004978 1.0e-64 252.7 260 53.5
Zm00001eb080310 Zea mays HOM05D004248 ORTHO05D004978 1.4e-64 252.3 733 28.2
THA.LOC104824536 Tarenaya hassleriana HOM05D004248 ORTHO05D004978 4.4e-63 247.3 218 58.7
Nitab4.5_0000020g0020 Nicotiana tabacum HOM05D004248 ORTHO05D004978 8.3e-62 243.0 228 58.3
Oeu036625.1 Olea europaea HOM05D004248 ORTHO05D004978 4.1e-61 240.7 577 30.3
PSO478G2592 Papaver somniferum HOM05D004248 ORTHO05D004978 4.7e-57 227.3 528 29.9
Cpa.g.sc104.34 Carica papaya HOM05D004248 ORTHO05D004978 1.6e-52 212.2 194 59.8
SMO114G0040 Selaginella moellendorffii HOM05D004248 ORTHO05D004978 8.6e-51 206.5 727 27.1
Ca_30860_v3 Cicer arietinum L. HOM05D004248 ORTHO05D004978 8.0e-49 199.9 345 37.4
Glyma.16G096800 Glycine max HOM05D004248 ORTHO05D004978 1.0e-48 199.5 193 52.3
Cc06_g06540 Coffea canephora HOM05D004248 ORTHO05D004978 5.2e-48 197.2 193 56.0
ATR0684G087 Amborella trichopoda HOM05D004248 ORTHO05D004978 7.0e-45 186.8 347 32.6
SHI44568 Sapria himalayana HOM05D004248 ORTHO05D004978 6.0e-44 183.7 200 49.0
C05p33550 Brassica napus HOM05D004248 ORTHO05D004978 1.2e-41 176.0 181 53.6
ATR0684G083 Amborella trichopoda HOM05D004248 ORTHO05D004978 2.3e-40 171.8 267 39.0
MBI13_g30331_MAGBIO Magnolia biondii HOM05D004248 ORTHO05D004978 1.7e-35 155.6 135 57.0
Lj1A1051T46 Lonicera japonica HOM05D004248 ORTHO05D004978 2.3e-35 155.2 216 42.1
BraA05t20915Z Brassica rapa HOM05D000848 ORTHO05D000007 3.0e-35 154.8 119 69.7
Nitab4.5_0002858g0090 Nicotiana tabacum HOM05D004248 ORTHO05D004978 8.6e-35 153.3 218 41.3
AagrBONN_evm.TU.Sc2ySwM_344.4227 Anthoceros agrestis HOM05D004248 ORTHO05D004978 1.4e-32 146.0 232 39.2
Lj1A1051T47 Lonicera japonica HOM05D004248 ORTHO05D004978 4.4e-31 141.0 191 41.4
AT4G04680 Arabidopsis thaliana HOM05D004248 ORTHO05D004978 1.1e-29 136.3 156 50.6
Nitab4.5_0000020g0040 Nicotiana tabacum HOM05D004248 ORTHO05D004978 1.9e-29 135.6 207 41.1
HanXRQChr06g0164411 Helianthus annuus HOM05D004248 ORTHO05D004978 4.1e-29 134.4 228 35.1
Nitab4.5_0000020g0030 Nicotiana tabacum HOM05D004248 ORTHO05D004978 3.5e-28 131.3 193 39.9
HanXRQChr01g0006711 Helianthus annuus HOM05D004248 ORTHO05D004978 1.1e-26 126.3 146 47.9
HanXRQChr06g0164401 Helianthus annuus HOM05D004248 ORTHO05D004978 1.1e-26 126.3 179 36.3
Cpa.g.c47797 Carica papaya HOM05D004248 ORTHO05D004978 5.2e-24 117.5 84 77.4
SEGI_14989 Sequoiadendron giganteum HOM05D004248 ORTHO05D004978 3.8e-22 111.3 336 24.4
Cre10.g442250 Chlamydomonas reinhardtii HOM05D004248 ORTHO05D004978 8.4e-22 110.2 168 35.7
RcHm_v2.0_Chr1g0331091 Rosa chinensis HOM05D004248 ORTHO05D004978 2.1e-20 105.5 109 52.3
Psat5g276400 Pisum sativum HOM05D004248 ORTHO05D004978 1.7e-19 102.4 87 63.2
Psat3g179800 Pisum sativum HOM05D004248 ORTHO05D004978 2.6e-15 88.6 90 47.8
Psat3g179840 Pisum sativum HOM05D004248 ORTHO05D004978 4.5e-15 87.8 89 48.3
SEGI_27247 Sequoiadendron giganteum HOM05D004248 ORTHO05D004978 6.4e-14 84.0 100 44.0
MCO15G695 Micromonas commoda HOM05D004248 ORTHO05D004978 2.1e-12 79.0 180 32.2
PRCOL_00003825 Prasinoderma coloniale HOM05D004248 ORTHO05D004978 2.3e-11 75.5 176 31.8
Potri.011G096201 Populus trichocarpa HOM05D004248 ORTHO05D004978 4.3e-10 71.2 73 50.7
BcaC07g36816 Brassica carinata HOM05D004248 ORTHO05D004978 1.5e-07 62.8 53 69.8
Phvul.004G028700 Phaseolus vulgaris HOM05D004248 ORTHO05D004978 4.5e-07 61.2 173 27.7


User provided reference genes

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