Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL4G18960 Arabidopsis lyrata HOM05D007323 ORTHO05D009238 3.3e-119 431.8 228 100.0
AT2G26340 Arabidopsis thaliana HOM05D007323 ORTHO05D009238 1.9e-106 389.4 230 92.2
Carub.0004s0625 Capsella rubella HOM05D007323 ORTHO05D009238 1.1e-101 373.6 230 89.1
Sp4g06990 Schrenkiella parvula HOM05D007323 ORTHO05D009238 9.0e-93 344.0 229 84.7
BcaC07g40825 Brassica carinata HOM05D007323 ORTHO05D009238 3.2e-90 335.5 228 80.3
C08p38170 Brassica napus HOM05D007323 ORTHO05D009238 3.2e-90 335.5 228 80.3
BolC8t51392H Brassica oleracea HOM05D007323 ORTHO05D009238 3.2e-90 335.5 228 80.3
Thhalv10002091m.g Eutrema salsugineum HOM05D007323 ORTHO05D009238 6.7e-88 327.8 230 82.6
BraA09t40931Z Brassica rapa HOM05D007323 ORTHO05D009238 8.7e-88 327.4 230 78.7
A09p55240 Brassica napus HOM05D007323 ORTHO05D009238 1.9e-87 326.2 232 78.0
Aa31LG2G12250 Aethionema arabicum HOM05D007323 ORTHO05D009238 2.8e-86 322.4 218 80.3
BcaB08g35255 Brassica carinata HOM05D007323 ORTHO05D009238 6.5e-83 311.2 228 78.1
CARHR118450 Cardamine hirsuta HOM05D007323 ORTHO05D009238 8.7e-80 300.8 177 90.4
THA.LOC104819519 Tarenaya hassleriana HOM05D007323 ORTHO05D009238 3.0e-72 275.8 214 70.6
A09p54710 Brassica napus HOM05D007323 ORTHO05D009238 1.2e-65 253.8 172 80.2
Ciclev10009314m.g Citrus clementina HOM05D007323 ORTHO05D009238 6.3e-62 241.5 213 62.9
COL.COLO4_21139 Corchorus olitorius HOM05D007323 ORTHO05D009238 1.4e-61 240.4 218 59.6
CANSAT25G3877 Cannabis sativa HOM05D007323 ORTHO05D009238 7.0e-61 238.0 232 56.9
Gorai.001G020100 Gossypium raimondii HOM05D007323 ORTHO05D009238 9.1e-61 237.7 211 59.2
Cfa017873 Carpinus fangiana HOM05D007323 ORTHO05D009238 2.0e-60 236.5 218 59.2
Thecc.09G063400 Theobroma cacao HOM05D007323 ORTHO05D009238 3.5e-60 235.7 202 61.9
Lj1g0021270 Lotus japonicus HOM05D007323 ORTHO05D009238 2.2e-59 233.0 223 58.3
Eucgr.B01965 Eucalyptus grandis HOM05D007323 ORTHO05D009238 5.0e-59 231.9 197 63.5
CiPaw.16G068300 Carya illinoinensis HOM05D007323 ORTHO05D009238 6.5e-59 231.5 211 58.8
Prupe.1G404100 Prunus persica HOM05D007323 ORTHO05D009238 1.1e-58 230.7 232 59.1
Duzib150G1239 Durio zibethinus HOM05D007323 ORTHO05D009238 3.2e-58 229.2 202 61.4
FAN20G2477 Fragaria x ananassa HOM05D007323 ORTHO05D009238 3.2e-58 229.2 212 61.3
Nn8g38659 Nelumbo nucifera HOM05D007323 ORTHO05D009238 3.2e-58 229.2 210 61.4
PGR031G0894 Punica granatum HOM05D007323 ORTHO05D009238 3.2e-58 229.2 201 62.7
FAN27G1709 Fragaria x ananassa HOM05D007323 ORTHO05D009238 4.2e-58 228.8 212 60.8
Glyma.06G055900 Glycine max HOM05D007323 ORTHO05D009238 4.2e-58 228.8 211 59.2
Sed0017686 Sechium edule HOM05D007323 ORTHO05D009238 5.5e-58 228.4 212 59.4
Ca_15835_v3 Cicer arietinum L. HOM05D007323 ORTHO05D009238 9.4e-58 227.6 229 55.9
FvH4_2g30980 Fragaria vesca HOM05D007323 ORTHO05D009238 9.4e-58 227.6 212 60.4
RcHm_v2.0_Chr6g0311811 Rosa chinensis HOM05D007323 ORTHO05D009238 9.4e-58 227.6 212 60.4
Gohir.D07G019400 Gossypium hirsutum HOM05D007323 ORTHO05D009238 1.2e-57 227.3 211 58.3
Phvul.009G082000 Phaseolus vulgaris HOM05D007323 ORTHO05D009238 1.2e-57 227.3 229 55.9
VMungo1309G0522 Vigna mungo HOM05D007323 ORTHO05D009238 1.6e-57 226.9 229 56.3
Gohir.A07G019600 Gossypium hirsutum HOM05D007323 ORTHO05D009238 3.6e-57 225.7 183 63.4
MD15G1049800 Malus domestica HOM05D007323 ORTHO05D009238 4.7e-57 225.3 212 59.9
TWI34G0887 Tripterygium wilfordii HOM05D007323 ORTHO05D009238 4.7e-57 225.3 209 56.9
FAN24G0989 Fragaria x ananassa HOM05D007323 ORTHO05D009238 1.0e-56 224.2 212 59.9
MELO3C011483.2 Cucumis melo HOM05D007323 ORTHO05D009238 1.4e-56 223.8 223 57.0
Lalb_Chr08g0244811 Lupinus albus HOM05D007323 ORTHO05D009238 1.4e-56 223.8 230 56.5
Atru.chr7.1847 Acer truncatum HOM05D007323 ORTHO05D009238 6.7e-56 221.5 174 67.2
MSTRG.25986 Avicennia marina HOM05D007323 ORTHO05D009238 2.0e-55 219.9 200 59.0
Manes.16G085700 Manihot esculenta HOM05D007323 ORTHO05D009238 2.0e-55 219.9 218 56.9
EL10Ac2g03780 Beta vulgaris HOM05D007323 ORTHO05D009238 4.4e-55 218.8 221 57.5
Dinv41843 Davidia involucrata HOM05D007323 ORTHO05D009238 4.4e-55 218.8 204 59.3
CsaV3_6G031970 Cucumis sativus L. HOM05D007323 ORTHO05D009238 5.7e-55 218.4 221 55.7
ClCG08G009880 Citrullus lanatus HOM05D007323 ORTHO05D009238 2.2e-54 216.5 221 54.8
Sabra06G0170600 Salix brachista HOM05D007323 ORTHO05D009238 2.2e-54 216.5 225 56.0
Sc06g0001110 Simmondsia chinensis HOM05D007323 ORTHO05D009238 3.7e-54 215.7 211 55.0
Migut.A00078 Erythranthe guttata HOM05D007323 ORTHO05D009238 4.8e-54 215.3 237 53.6
QL02p017014 Quercus lobata HOM05D007323 ORTHO05D009238 8.2e-54 214.5 198 58.1
Potri.006G220800 Populus trichocarpa HOM05D007323 ORTHO05D009238 1.4e-53 213.8 225 55.6
Cc08_g01150 Coffea canephora HOM05D007323 ORTHO05D009238 1.8e-53 213.4 229 53.3
Haze_18294 Corylus avellana HOM05D007323 ORTHO05D009238 2.4e-53 213.0 268 48.5
Medtr3g105050 Medicago truncatula HOM05D007323 ORTHO05D009238 2.4e-53 213.0 222 56.8
TPR.G3557 Trifolium pratense HOM05D007323 ORTHO05D009238 5.3e-53 211.8 198 58.1
vmacro05236 Vaccinium macrocarpon HOM05D007323 ORTHO05D009238 9.1e-53 211.1 183 62.8
GSVIVG01035470001 Vitis vinifera HOM05D007323 ORTHO05D009238 9.1e-53 211.1 184 62.0
CDE05G0862 Ceratophyllum demersum HOM05D007323 ORTHO05D009238 3.5e-52 209.1 195 59.5
Sopen08g017220 Solanum pennellii HOM05D007323 ORTHO05D009238 3.5e-52 209.1 240 51.7
SGA_v2.0_scaffold20G09163 Striga asiatica HOM05D007323 ORTHO05D009238 3.5e-52 209.1 196 57.7
Actinidia03545 Actinidia chinensis HOM05D007323 ORTHO05D009238 4.5e-52 208.8 196 59.7
Rhsim10G0107900 Rhododendron simsii HOM05D007323 ORTHO05D009238 7.7e-52 208.0 177 63.8
Hund03297 Selenicereus undatus HOM05D007323 ORTHO05D009238 1.0e-51 207.6 212 54.2
arahy.Tifrunner.gnm1.ann1.7DEW7H Arachis hypogaea HOM05D007323 ORTHO05D009238 1.3e-51 207.2 213 57.3
ECA234G0604 Erigeron canadensis HOM05D007323 ORTHO05D009238 1.3e-51 207.2 219 53.4
Aqoxy7G01049 Aquilegia oxysepala HOM05D007323 ORTHO05D009238 2.9e-51 206.1 198 59.6
Nitab4.5_0002831g0040 Nicotiana tabacum HOM05D007323 ORTHO05D009238 3.8e-51 205.7 209 56.9
HanXRQChr10g0309971 Helianthus annuus HOM05D007323 ORTHO05D009238 1.5e-50 203.8 210 53.3
Nitab4.5_0000446g0180 Nicotiana tabacum HOM05D007323 ORTHO05D009238 2.5e-50 203.0 209 56.5
Lsat_1_v5_gn_5_79461 Lactuca sativa HOM05D007323 ORTHO05D009238 3.2e-50 202.6 216 52.3
PSO063G6894 Papaver somniferum HOM05D007323 ORTHO05D009238 1.2e-49 200.7 225 53.3
ATR0598G133 Amborella trichopoda HOM05D007323 ORTHO05D009238 2.1e-49 199.9 175 62.3
PSO421G0353 Papaver somniferum HOM05D007323 ORTHO05D009238 2.1e-49 199.9 220 54.1
unitig_8.g4975 Utricularia gibba HOM05D007323 ORTHO05D009238 4.7e-49 198.7 209 55.5
DCAR_007767 Daucus carota HOM05D007323 ORTHO05D009238 5.7e-47 191.8 229 51.5
arahy.Tifrunner.gnm1.ann1.287SRD Arachis hypogaea HOM05D007323 ORTHO05D009238 7.5e-47 191.4 220 52.7
HPP92_024332 Vanilla planifolia HOM05D007323 ORTHO05D009238 1.7e-46 190.3 206 51.9
Os03g0176700 Oryza sativa ssp. japonica HOM05D007323 ORTHO05D009238 3.1e-45 186.0 194 54.1
Zm00001eb005760 Zea mays HOM05D007323 ORTHO05D009238 9.1e-45 184.5 200 53.0
Psat5g030560 Pisum sativum HOM05D007323 ORTHO05D009238 3.5e-44 182.6 182 55.5
SEGI_00918 Sequoiadendron giganteum HOM05D007323 ORTHO05D009238 5.5e-42 175.3 226 47.8
AUR62009079 Chenopodium quinoa HOM05D007323 ORTHO05D009238 6.1e-41 171.8 164 58.5
AagrBONN_evm.TU.Sc2ySwM_228.4439 Anthoceros agrestis HOM05D007323 ORTHO05D009238 3.0e-40 169.5 181 51.4
Pp3c4_13280 Physcomitrium patens HOM05D007323 ORTHO05D009238 4.0e-40 169.1 180 50.6
SMO239G0030 Selaginella moellendorffii HOM05D007323 ORTHO05D009238 2.4e-37 159.8 210 46.2
Eucgr.B01870 Eucalyptus grandis HOM05D007323 ORTHO05D009238 2.7e-36 156.4 135 64.4
Mapoly0001s0019 Marchantia polymorpha HOM05D007323 ORTHO05D009238 1.2e-33 147.5 173 46.8
AUR62020587 Chenopodium quinoa HOM05D007323 ORTHO05D009238 1.6e-33 147.1 226 43.8
Peaxi162Scf00486g01025 Petunia axillaris HOM05D007323 ORTHO05D009238 8.0e-33 144.8 148 54.7
TAR636G1368 Trochodendron aralioides HOM05D007323 ORTHO05D009238 1.8e-32 143.7 152 52.0
MBI13_g42814_MAGBIO Magnolia biondii HOM05D007323 ORTHO05D009238 1.9e-26 123.6 349 34.1
Cpa.g.sc126.24 Carica papaya HOM05D007323 ORTHO05D009238 9.5e-26 121.3 106 62.3
CBR_g19268 Chara braunii HOM05D007323 ORTHO05D009238 1.8e-24 117.1 145 42.8
CSS0001075 Camellia sinensis var. sinensis HOM05D007323 ORTHO05D009238 1.9e-21 107.1 106 58.5
CSS0018719 Camellia sinensis var. sinensis HOM05D007323 ORTHO05D009238 1.9e-21 107.1 106 58.5
Cre16.g684150 Chlamydomonas reinhardtii HOM05D007323 ORTHO05D009238 4.4e-15 85.9 172 32.6
MD08G1071400 Malus domestica HOM05D007323 ORTHO05D009238 1.3e-14 84.3 64 70.3
Solyc08g061800.3 Solanum lycopersicum HOM05D007323 ORTHO05D009238 2.1e-09 67.0 102 42.2
Os03g0176800 Oryza sativa ssp. japonica HOM05D009542 ORTHO05D294036 3.6e-09 66.2 145 31.7


User provided reference genes

Program Settings