Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL4G18760 Arabidopsis lyrata HOM05D006517 ORTHO05D007886 3.4e-101 371.7 190 100.0
AT2G26210 Arabidopsis thaliana HOM05D006517 ORTHO05D007886 6.1e-95 350.9 191 94.8
Carub.0004s0605 Capsella rubella HOM05D006517 ORTHO05D007886 8.9e-86 320.5 193 85.5
CARHR115040 Cardamine hirsuta HOM05D006517 ORTHO05D007886 1.9e-83 312.8 188 86.7
Sp4g06310 Schrenkiella parvula HOM05D006517 ORTHO05D007886 5.4e-75 284.6 186 81.2
Aa31LG5G9580 Aethionema arabicum HOM05D006517 ORTHO05D007886 8.6e-73 277.3 193 75.6
C04p55990 Brassica napus HOM05D006517 ORTHO05D007886 1.4e-62 243.4 174 76.4
BolC4t27132H Brassica oleracea HOM05D006517 ORTHO05D007886 1.4e-62 243.4 177 75.1
BraA04t17607Z Brassica rapa HOM05D006517 ORTHO05D007886 3.4e-61 238.8 173 75.7
A04p20280 Brassica napus HOM05D006517 ORTHO05D007886 3.8e-60 235.3 173 75.1
THA.LOC104804445 Tarenaya hassleriana HOM05D006517 ORTHO05D007886 3.5e-58 228.8 205 62.9
Thhalv10002200m.g Eutrema salsugineum HOM05D006517 ORTHO05D007886 4.8e-55 218.4 188 65.4
BcaNung07167 Brassica carinata HOM05D006517 ORTHO05D007886 8.1e-55 217.6 173 70.5
COL.COLO4_21178 Corchorus olitorius HOM05D006517 ORTHO05D007886 1.3e-52 210.3 200 57.5
Gohir.D08G268100 Gossypium hirsutum HOM05D006517 ORTHO05D007886 1.7e-52 209.9 202 56.4
Gorai.004G285800 Gossypium raimondii HOM05D006517 ORTHO05D007886 1.7e-52 209.9 202 56.4
TPR.G12541 Trifolium pratense HOM05D006517 ORTHO05D007886 1.7e-52 209.9 206 56.8
Lalb_Chr13g0299091 Lupinus albus HOM05D006517 ORTHO05D007886 6.4e-52 208.0 208 57.2
Phvul.003G125800 Phaseolus vulgaris HOM05D006517 ORTHO05D007886 6.4e-52 208.0 197 56.3
Glyma.13G116000 Glycine max HOM05D006517 ORTHO05D007886 1.1e-51 207.2 204 57.8
Gohir.A08G246900 Gossypium hirsutum HOM05D006517 ORTHO05D007886 1.2e-50 203.8 197 56.3
Potri.018G047000 Populus trichocarpa HOM05D006517 ORTHO05D007886 1.2e-50 203.8 201 55.7
Duzib168G1027 Durio zibethinus HOM05D006517 ORTHO05D007886 2.1e-50 203.0 204 54.9
Glyma.17G043800 Glycine max HOM05D006517 ORTHO05D007886 2.1e-50 203.0 204 57.4
Medtr4g124370 Medicago truncatula HOM05D006517 ORTHO05D007886 2.1e-50 203.0 203 56.2
Ca_21351_v3 Cicer arietinum L. HOM05D006517 ORTHO05D007886 2.7e-50 202.6 207 55.1
Lj4g0027818 Lotus japonicus HOM05D006517 ORTHO05D007886 3.5e-50 202.2 204 56.9
Manes.03G055100 Manihot esculenta HOM05D006517 ORTHO05D007886 7.9e-50 201.1 201 56.2
Atru.chr7.1806 Acer truncatum HOM05D006517 ORTHO05D007886 1.3e-49 200.3 205 55.1
Duzib150G1397 Durio zibethinus HOM05D006517 ORTHO05D007886 8.7e-49 197.6 204 54.4
Prupe.7G189300 Prunus persica HOM05D006517 ORTHO05D007886 1.5e-48 196.8 204 53.9
Thecc.09G067300 Theobroma cacao HOM05D006517 ORTHO05D007886 2.5e-48 196.1 204 53.9
CiPaw.03G198900 Carya illinoinensis HOM05D006517 ORTHO05D007886 4.3e-48 195.3 201 54.7
Cfa010680 Carpinus fangiana HOM05D006517 ORTHO05D007886 6.2e-47 191.4 201 54.2
Duzib187G0844 Durio zibethinus HOM05D006517 ORTHO05D007886 6.2e-47 191.4 204 53.9
QL11p003516 Quercus lobata HOM05D006517 ORTHO05D007886 1.8e-46 189.9 201 52.2
GSVIVG01000273001 Vitis vinifera HOM05D006517 ORTHO05D007886 1.8e-46 189.9 202 54.0
Lsat_1_v5_gn_8_118080 Lactuca sativa HOM05D006517 ORTHO05D007886 1.2e-45 187.2 188 53.7
Migut.J00866 Erythranthe guttata HOM05D006517 ORTHO05D007886 1.5e-45 186.8 205 52.7
Oeu000272.2 Olea europaea HOM05D006517 ORTHO05D007886 2.0e-45 186.4 209 51.7
Potri.006G217100 Populus trichocarpa HOM05D006517 ORTHO05D007886 7.6e-45 184.5 203 52.2
Eucgr.C00754 Eucalyptus grandis HOM05D006517 ORTHO05D007886 1.3e-44 183.7 198 52.0
RcHm_v2.0_Chr2g0096541 Rosa chinensis HOM05D006517 ORTHO05D007886 1.7e-44 183.3 202 52.0
EL10Ac8g18944 Beta vulgaris HOM05D006517 ORTHO05D007886 4.9e-44 181.8 203 51.7
Oeu000950.1 Olea europaea HOM05D006517 ORTHO05D007886 8.4e-44 181.0 213 51.2
PGR124G0001 Punica granatum HOM05D006517 ORTHO05D007886 8.4e-44 181.0 197 51.8
PGR142G0057 Punica granatum HOM05D006517 ORTHO05D007886 8.4e-44 181.0 197 51.8
SGA_v2.0_scaffold31G12706 Striga asiatica HOM05D006517 ORTHO05D007886 8.4e-44 181.0 201 50.2
ECA232G0292 Erigeron canadensis HOM05D001622 ORTHO05D002989 1.1e-43 180.6 190 52.6
HanXRQChr09g0258421 Helianthus annuus HOM05D006517 ORTHO05D007886 1.9e-43 179.9 185 53.0
CSS0016512 Camellia sinensis var. sinensis HOM05D006517 ORTHO05D007886 7.1e-43 177.9 203 51.2
TAR383G1010 Trochodendron aralioides HOM05D006517 ORTHO05D007886 1.6e-42 176.8 213 48.8
Sc18g0002960 Simmondsia chinensis HOM05D006517 ORTHO05D007886 2.1e-42 176.4 200 50.5
Ah.09g228830 Amaranthus hybridus HOM05D006517 ORTHO05D007886 2.7e-42 176.0 196 47.4
Ciclev10009053m.g Citrus clementina HOM05D006517 ORTHO05D007886 3.5e-42 175.6 206 49.5
AUR62025324 Chenopodium quinoa HOM05D006517 ORTHO05D007886 4.6e-42 175.3 204 49.0
ClCG03G014700 Citrullus lanatus HOM05D006517 ORTHO05D007886 4.6e-42 175.3 192 51.0
Sed0014627 Sechium edule HOM05D006517 ORTHO05D007886 1.0e-41 174.1 195 50.8
Hund08920 Selenicereus undatus HOM05D006517 ORTHO05D007886 1.0e-41 174.1 194 52.6
Nitab4.5_0000987g0010 Nicotiana tabacum HOM05D006517 ORTHO05D007886 1.8e-41 173.3 206 47.6
Actinidia39602 Actinidia chinensis HOM05D006517 ORTHO05D007886 3.9e-41 172.2 170 53.5
MD15G1225700 Malus domestica HOM05D006517 ORTHO05D007886 1.1e-40 170.6 204 49.5
CsaV3_1G041470 Cucumis sativus L. HOM05D006517 ORTHO05D007886 1.5e-40 170.2 201 48.3
SGA_v2.0_scaffold318G48507 Striga asiatica HOM05D006517 ORTHO05D007886 1.9e-40 169.9 192 48.4
Dinv42443 Davidia involucrata HOM05D006517 ORTHO05D007886 3.3e-40 169.1 199 49.7
SalBow6G1494 Salvia bowleyana HOM05D006517 ORTHO05D007886 4.3e-40 168.7 190 50.5
CAN.G55.2 Capsicum annuum HOM05D006517 ORTHO05D007886 1.3e-39 167.2 204 49.0
unitig_26.g9120 Utricularia gibba HOM05D006517 ORTHO05D007886 2.1e-39 166.4 201 47.8
VMungo1215G1783 Vigna mungo HOM05D006517 ORTHO05D007886 2.1e-39 166.4 110 75.5
PSO541G2149 Papaver somniferum HOM05D006517 ORTHO05D007886 3.7e-39 165.6 209 49.3
PSO675G5415 Papaver somniferum HOM05D006517 ORTHO05D007886 4.8e-39 165.2 209 48.3
CANSAT56G3804 Cannabis sativa HOM05D006517 ORTHO05D007886 1.4e-38 163.7 203 48.8
CDE05G1274 Ceratophyllum demersum HOM05D006517 ORTHO05D007886 3.1e-38 162.5 207 45.9
Zm00001eb327610 Zea mays HOM05D006517 ORTHO05D007886 5.3e-38 161.8 171 55.0
FAN23G1398 Fragaria x ananassa HOM05D006517 ORTHO05D007886 6.9e-38 161.4 198 49.0
MD02G1105800 Malus domestica HOM05D006517 ORTHO05D007886 1.2e-37 160.6 121 68.6
CANSAT56G0784 Cannabis sativa HOM05D006517 ORTHO05D007886 3.4e-37 159.1 204 48.5
FvH4_1g09680 Fragaria vesca HOM05D006517 ORTHO05D007886 5.8e-37 158.3 126 65.1
FAN26G1998 Fragaria x ananassa HOM05D006517 ORTHO05D007886 5.8e-37 158.3 126 65.1
ATR0006G021 Amborella trichopoda HOM05D006517 ORTHO05D007886 1.7e-36 156.8 172 51.2
Cpa.g.sc82.30 Carica papaya HOM05D006517 ORTHO05D007886 1.7e-36 156.8 102 70.6
MELO3C015558.2 Cucumis melo HOM05D006517 ORTHO05D007886 2.9e-36 156.0 197 46.2
Nn8g38504 Nelumbo nucifera HOM05D006517 ORTHO05D007886 3.8e-36 155.6 101 75.2
Nitab4.5_0005239g0010 Nicotiana tabacum HOM05D006517 ORTHO05D007886 4.9e-36 155.2 201 45.8
MBI13_g05966_MAGBIO Magnolia biondii HOM05D006517 ORTHO05D007886 6.5e-36 154.8 210 43.3
arahy.Tifrunner.gnm1.ann1.2S6U7G Arachis hypogaea HOM05D006517 ORTHO05D007886 8.4e-36 154.5 183 50.8
Cc09_g04380 Coffea canephora HOM05D006517 ORTHO05D007886 9.3e-35 151.0 126 60.3
Sabra06G0167400 Salix brachista HOM05D006517 ORTHO05D007886 1.2e-34 150.6 218 43.6
Mapoly0086s0040 Marchantia polymorpha HOM05D006517 ORTHO05D007886 2.3e-33 146.4 175 46.3
Rhsim05G0081000 Rhododendron simsii HOM05D006517 ORTHO05D007886 8.7e-33 144.4 251 40.2
Solyc06g031690.4 Solanum lycopersicum HOM05D006517 ORTHO05D007886 7.4e-32 141.4 99 66.7
Os07g0618600 Oryza sativa ssp. japonica HOM05D006517 ORTHO05D007886 1.6e-31 140.2 109 64.2
Aqoxy7G00916 Aquilegia oxysepala HOM05D006517 ORTHO05D007886 8.2e-31 137.9 212 41.0
AUR62028338 Chenopodium quinoa HOM05D000417 ORTHO05D007886 1.4e-30 137.1 182 45.1
HPP92_002174 Vanilla planifolia HOM05D000872 ORTHO05D007886 3.1e-30 136.0 153 51.0
Actinidia39601 Actinidia chinensis HOM05D006517 ORTHO05D007886 4.1e-30 135.6 150 49.3
FAN28G2617 Fragaria x ananassa HOM05D006517 ORTHO05D007886 1.2e-29 134.0 202 44.6
SMO117G0175 Selaginella moellendorffii HOM05D006517 ORTHO05D007886 3.4e-29 132.5 177 44.6
Psat4g020160 Pisum sativum HOM05D006517 ORTHO05D007886 5.9e-29 131.7 160 50.0
FAN23G2301 Fragaria x ananassa HOM05D006517 ORTHO05D007886 7.2e-27 124.8 198 43.4
DCAR_010521 Daucus carota HOM05D006517 ORTHO05D007886 3.5e-26 122.5 214 36.9
FAN19G3155 Fragaria x ananassa HOM05D006517 ORTHO05D007886 6.1e-26 121.7 126 56.3
FAN26G3113 Fragaria x ananassa HOM05D006517 ORTHO05D007886 6.1e-26 121.7 126 56.3
Haze_03605 Corylus avellana HOM05D006517 ORTHO05D007886 1.3e-25 120.6 179 44.7
Pp3c18_11010 Physcomitrium patens HOM05D006517 ORTHO05D007886 1.3e-23 114.0 113 51.3
arahy.Tifrunner.gnm1.ann1.0410DC Arachis hypogaea HOM05D006517 ORTHO05D007886 8.2e-23 111.3 159 45.3
CBR_g36802 Chara braunii HOM05D006517 ORTHO05D007886 2.1e-18 96.7 158 36.1
Medtr5g081760 Medicago truncatula HOM05D006517 ORTHO05D007886 5.7e-16 88.6 81 56.8
Peaxi162Scf00658g00031 Petunia axillaris HOM05D000115 ORTHO05D000464 9.7e-16 87.8 146 39.7
Medtr4g036440 Medicago truncatula HOM05D006517 ORTHO05D007886 4.8e-15 85.5 75 61.3
vmacro13145 Vaccinium macrocarpon HOM05D006517 ORTHO05D007886 7.7e-13 78.2 197 34.5
Medtr8g098885 Medicago truncatula HOM05D006517 ORTHO05D007886 6.5e-12 75.1 49 69.4
HPP92_002241 Vanilla planifolia HOM05D000872 ORTHO05D000777 1.6e-10 70.5 120 40.0
TWI73G0176 Tripterygium wilfordii HOM05D000088 ORTHO05D003056 5.1e-09 65.5 110 32.7
TWI09G1601 Tripterygium wilfordii HOM05D000088 ORTHO05D003056 2.0e-08 63.5 97 35.1
Ca_00492_v3 Cicer arietinum L. HOM05D000088 ORTHO05D003056 4.8e-07 58.9 111 29.7
Thecc.06G161000 Theobroma cacao HOM05D000088 ORTHO05D003056 4.8e-07 58.9 110 30.9
Potri.004G064400 Populus trichocarpa HOM05D000088 ORTHO05D003056 6.3e-07 58.5 92 33.7
TAR633G2105 Trochodendron aralioides HOM05D007663 ORTHO05D009455 6.3e-07 58.5 75 38.7
Cpa.g.sc442.1 Carica papaya HOM05D000088 ORTHO05D003056 8.2e-07 58.2 104 33.7
Sabra04G0042700 Salix brachista HOM05D000088 ORTHO05D003056 1.4e-06 57.4 90 33.3
MSTRG.14748 Avicennia marina HOM05D000088 ORTHO05D003056 2.4e-06 56.6 86 36.0
BcaNung04872 Brassica carinata HOM05D000088 ORTHO05D003056 2.4e-06 56.6 70 40.0
Sp7g17660 Schrenkiella parvula HOM05D000088 ORTHO05D003056 2.4e-06 56.6 70 40.0
SGA_v2.0_scaffold123G33471 Striga asiatica HOM05D000088 ORTHO05D003056 3.1e-06 56.2 80 38.8
Lj6g0019783 Lotus japonicus HOM05D000088 ORTHO05D003056 4.1e-06 55.8 94 28.7
BcaB04g18510 Brassica carinata HOM05D000088 ORTHO05D003056 5.3e-06 55.5 104 33.7
Psat1g193640 Pisum sativum HOM05D000088 ORTHO05D003056 5.3e-06 55.5 71 35.2
Cpa.g.sc50.67 Carica papaya HOM05D000088 ORTHO05D003056 7.0e-06 55.1 76 39.5
PSO675G5861 Papaver somniferum HOM05D000088 ORTHO05D003056 7.0e-06 55.1 76 35.5
AL7G35220 Arabidopsis lyrata HOM05D000088 ORTHO05D003056 9.1e-06 54.7 69 39.1
Carub.0007s2223 Capsella rubella HOM05D000088 ORTHO05D003056 9.1e-06 54.7 60 41.7
Thhalv10025157m.g Eutrema salsugineum HOM05D000088 ORTHO05D003056 9.1e-06 54.7 70 38.6
PSO541G2251 Papaver somniferum HOM05D000088 ORTHO05D003056 9.1e-06 54.7 76 35.5


User provided reference genes

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