Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL4G18600 Arabidopsis lyrata HOM05D000958 ORTHO05D000786 1.3e-39 166.0 87 100.0
AL8G37170 Arabidopsis lyrata HOM05D000958 ORTHO05D000786 4.0e-09 64.7 35 97.1
AT5G60580 Arabidopsis thaliana HOM05D000958 ORTHO05D000786 4.0e-09 64.7 35 97.1
Carub.0008s2126 Capsella rubella HOM05D000958 ORTHO05D000786 4.0e-09 64.7 35 97.1
Aa31LG1G12560 Aethionema arabicum HOM05D000958 ORTHO05D000786 9.0e-09 63.5 33 100.0
CARHR274240 Cardamine hirsuta HOM05D000958 ORTHO05D000786 9.0e-09 63.5 33 100.0
BcaB05g22655 Brassica carinata HOM05D000958 ORTHO05D000786 1.2e-08 63.2 33 97.0
BcaB08g36353 Brassica carinata HOM05D000958 ORTHO05D000786 1.2e-08 63.2 33 97.0
BcaC04g19716 Brassica carinata HOM05D000958 ORTHO05D000786 1.2e-08 63.2 33 97.0
A10p17770 Brassica napus HOM05D000958 ORTHO05D000786 1.2e-08 63.2 33 97.0
BNapus_Darmor_BZH_scaffold_38p00020 Brassica napus HOM05D000958 ORTHO05D000786 1.2e-08 63.2 33 97.0
C02p11580 Brassica napus HOM05D000958 ORTHO05D000786 1.2e-08 63.2 33 97.0
C09p53220 Brassica napus HOM05D000958 ORTHO05D000786 1.2e-08 63.2 33 97.0
BraA02t05715Z Brassica rapa HOM05D000958 ORTHO05D000786 1.2e-08 63.2 33 97.0
Thhalv10013381m.g Eutrema salsugineum HOM05D000958 ORTHO05D000786 1.2e-08 63.2 33 97.0
Sp6g22150 Schrenkiella parvula HOM05D000958 ORTHO05D000786 1.2e-08 63.2 33 97.0
Aa31LG4G14550 Aethionema arabicum HOM05D000958 ORTHO05D000786 5.8e-08 60.8 35 85.7
Dinv32754 Davidia involucrata HOM05D000958 ORTHO05D000786 5.8e-08 60.8 32 93.8
BcaC03g13958 Brassica carinata HOM05D000958 ORTHO05D000786 9.9e-08 60.1 33 93.9
BolC2t07244H Brassica oleracea HOM05D000958 ORTHO05D000786 9.9e-08 60.1 33 93.9
THA.LOC104810853 Tarenaya hassleriana HOM05D000958 ORTHO05D000786 9.9e-08 60.1 33 87.9
Cc01_g11190 Coffea canephora HOM05D000958 ORTHO05D000786 1.3e-07 59.7 33 90.9
TAR633G2057 Trochodendron aralioides HOM05D000958 ORTHO05D000786 1.3e-07 59.7 33 84.8
CANSAT54G2392 Cannabis sativa HOM05D000958 ORTHO05D000786 1.7e-07 59.3 33 87.9
MD11G1134800 Malus domestica HOM05D000958 ORTHO05D000786 2.2e-07 58.9 33 87.9
GSVIVG01025179001 Vitis vinifera HOM05D000958 ORTHO05D000786 2.2e-07 58.9 33 84.8
CAN.G631.21 Capsicum annuum HOM05D000958 ORTHO05D000786 2.9e-07 58.5 33 87.9
Duzib168G0625 Durio zibethinus HOM05D000958 ORTHO05D000786 2.9e-07 58.5 35 80.0
FvH4_3g32510 Fragaria vesca HOM05D000958 ORTHO05D000786 2.9e-07 58.5 33 87.9
FAN11G1310 Fragaria x ananassa HOM05D000958 ORTHO05D000786 2.9e-07 58.5 33 87.9
FAN16G0176 Fragaria x ananassa HOM05D000958 ORTHO05D000786 2.9e-07 58.5 33 87.9
FAN21G1580 Fragaria x ananassa HOM05D000958 ORTHO05D000786 2.9e-07 58.5 33 87.9
FAN25G1476 Fragaria x ananassa HOM05D000958 ORTHO05D000786 2.9e-07 58.5 33 87.9
Nitab4.5_0003701g0020 Nicotiana tabacum HOM05D000958 ORTHO05D000786 2.9e-07 58.5 33 87.9
QL01p022338 Quercus lobata HOM05D000958 ORTHO05D000786 2.9e-07 58.5 33 87.9
RcHm_v2.0_Chr5g0059571 Rosa chinensis HOM05D000958 ORTHO05D000786 2.9e-07 58.5 33 87.9
Solyc11g069350.2 Solanum lycopersicum HOM05D000958 ORTHO05D000786 2.9e-07 58.5 33 87.9
Sopen11g028070 Solanum pennellii HOM05D000958 ORTHO05D000786 2.9e-07 58.5 33 87.9
PGSC0003DMG400008105 Solanum tuberosum HOM05D000958 ORTHO05D000786 2.9e-07 58.5 33 87.9
Cpa.g.sc216.15 Carica papaya HOM05D000958 ORTHO05D000786 3.8e-07 58.2 33 84.8
Cfa011323 Carpinus fangiana HOM05D000958 ORTHO05D000786 3.8e-07 58.2 32 87.5
Haze_23840 Corylus avellana HOM05D000958 ORTHO05D000786 3.8e-07 58.2 33 84.8
Gohir.A05G102400 Gossypium hirsutum HOM05D000958 ORTHO05D000786 3.8e-07 58.2 35 80.0
Gohir.D05G102100 Gossypium hirsutum HOM05D000958 ORTHO05D000786 3.8e-07 58.2 35 80.0
Gorai.009G106300 Gossypium raimondii HOM05D000958 ORTHO05D000786 3.8e-07 58.2 35 80.0
Peaxi162Scf00270g00822 Petunia axillaris HOM05D000958 ORTHO05D000786 3.8e-07 58.2 33 84.8
ClCG03G002200 Citrullus lanatus HOM05D000958 ORTHO05D000786 4.9e-07 57.8 33 87.9
MELO3C005058.2 Cucumis melo HOM05D000958 ORTHO05D000786 4.9e-07 57.8 33 87.9
CsaV3_1G012850 Cucumis sativus L. HOM05D000958 ORTHO05D000786 4.9e-07 57.8 33 87.9
Hma1.2p1_1031F.1_g250000 Hydrangea macrophylla HOM05D000958 ORTHO05D000786 4.9e-07 57.8 33 81.8
arahy.Tifrunner.gnm1.ann1.0990KC Arachis hypogaea HOM05D000958 ORTHO05D000786 6.4e-07 57.4 33 87.9
arahy.Tifrunner.gnm1.ann1.IW12TT Arachis hypogaea HOM05D000958 ORTHO05D000786 6.4e-07 57.4 33 87.9
BolC9t58197H Brassica oleracea HOM05D000958 ORTHO05D000786 6.4e-07 57.4 36 86.1
COL.COLO4_18341 Corchorus olitorius HOM05D000958 ORTHO05D000786 6.4e-07 57.4 35 80.0
Glyma.11G147100 Glycine max HOM05D000958 ORTHO05D000786 6.4e-07 57.4 33 87.9
Lj3g0023136 Lotus japonicus HOM05D000958 ORTHO05D000786 6.4e-07 57.4 33 87.9
Nn2g10778 Nelumbo nucifera HOM05D000958 ORTHO05D000786 6.4e-07 57.4 33 81.8
Prupe.6G100700 Prunus persica HOM05D000958 ORTHO05D000786 6.4e-07 57.4 33 84.8
Rhsim13G0094000 Rhododendron simsii HOM05D000958 ORTHO05D000786 6.4e-07 57.4 33 84.8
Thecc.09G339800 Theobroma cacao HOM05D000958 ORTHO05D000786 6.4e-07 57.4 35 80.0
BraA10t43854Z Brassica rapa HOM05D000958 ORTHO05D000786 8.4e-07 57.0 35 88.6
ECA233G5857 Erigeron canadensis HOM05D000958 ORTHO05D000786 8.4e-07 57.0 33 84.8
HanXRQChr13g0403501 Helianthus annuus HOM05D000958 ORTHO05D000786 8.4e-07 57.0 33 81.8
Lj1C191G1 Lonicera japonica HOM05D000958 ORTHO05D000786 8.4e-07 57.0 33 81.8
MD03G1116800 Malus domestica HOM05D000958 ORTHO05D000786 8.4e-07 57.0 33 84.8
Hund08140 Selenicereus undatus HOM05D000958 ORTHO05D000786 8.4e-07 57.0 33 81.8
Ciclev10028219m.g Citrus clementina HOM05D000958 ORTHO05D000786 1.1e-06 56.6 33 84.8
Medtr4g059540 Medicago truncatula HOM05D000958 ORTHO05D000786 1.1e-06 56.6 33 84.8
Medtr4g459440 Medicago truncatula HOM05D000958 ORTHO05D000786 1.1e-06 56.6 33 84.8
VMungo1127G2174 Vigna mungo HOM05D000958 ORTHO05D000786 1.1e-06 56.6 33 84.8
Aqoxy1G01624 Aquilegia oxysepala HOM05D000958 ORTHO05D000786 1.4e-06 56.2 33 81.8
Aqoxy5G04135 Aquilegia oxysepala HOM05D000958 ORTHO05D000786 1.4e-06 56.2 33 81.8
ClCG02G021130 Citrullus lanatus HOM05D000958 ORTHO05D000786 1.4e-06 56.2 33 78.8
Gohir.A08G197300 Gossypium hirsutum HOM05D000958 ORTHO05D000786 1.4e-06 56.2 35 74.3
Gohir.D08G214500 Gossypium hirsutum HOM05D000958 ORTHO05D000786 1.4e-06 56.2 35 74.3
Gorai.004G228500 Gossypium raimondii HOM05D000958 ORTHO05D000786 1.4e-06 56.2 35 74.3
Lsat_1_v5_gn_2_98320 Lactuca sativa HOM05D000958 ORTHO05D000786 1.4e-06 56.2 33 81.8
Lj2C1029T9 Lonicera japonica HOM05D000958 ORTHO05D000786 1.4e-06 56.2 33 81.8
MBI10_g06417_MAGBIO Magnolia biondii HOM05D000958 ORTHO05D000786 1.4e-06 56.2 33 78.8
Phvul.011G078700 Phaseolus vulgaris HOM05D000958 ORTHO05D000786 1.4e-06 56.2 33 84.8
CDE08G0303 Ceratophyllum demersum HOM05D000958 ORTHO05D000786 1.9e-06 55.8 33 81.8
Glyma.12G068000 Glycine max HOM05D000958 ORTHO05D000786 1.9e-06 55.8 33 84.8
Lsat_1_v5_gn_6_46001 Lactuca sativa HOM05D000958 ORTHO05D000786 1.9e-06 55.8 33 81.8
Manes.04G021800 Manihot esculenta HOM05D000958 ORTHO05D000786 1.9e-06 55.8 33 81.8
TPR.G15530 Trifolium pratense HOM05D000958 ORTHO05D000786 1.9e-06 55.8 33 81.8
TAR623G1263 Trochodendron aralioides HOM05D000958 ORTHO05D000786 1.9e-06 55.8 33 78.8
HanXRQChr02g0055771 Helianthus annuus HOM05D000958 ORTHO05D000786 2.4e-06 55.5 33 81.8
ECA238G3013 Erigeron canadensis HOM05D000958 ORTHO05D000786 3.2e-06 55.1 33 81.8
PGR119G0979 Punica granatum HOM05D000958 ORTHO05D000786 3.2e-06 55.1 33 75.8
Sed0022909 Sechium edule HOM05D000958 ORTHO05D000786 3.2e-06 55.1 33 81.8
Gorai.003G141100 Gossypium raimondii HOM05D000958 ORTHO05D000786 4.2e-06 54.7 32 81.2
Lj2A111T61 Lonicera japonica HOM05D000958 ORTHO05D000786 4.2e-06 54.7 33 78.8
Potri.009G013300 Populus trichocarpa HOM05D000958 ORTHO05D000786 4.2e-06 54.7 60 55.0
TWI79G1047 Tripterygium wilfordii HOM05D000958 ORTHO05D000786 4.2e-06 54.7 33 75.8
MSTRG.17808 Avicennia marina HOM05D000958 ORTHO05D000786 5.4e-06 54.3 33 75.8
Atru.chr3.3637 Acer truncatum HOM05D000958 ORTHO05D000786 7.1e-06 53.9 33 78.8
Ca_13653_v3 Cicer arietinum L. HOM05D000958 ORTHO05D000786 7.1e-06 53.9 33 78.8
Duzib170G0641 Durio zibethinus HOM05D000958 ORTHO05D000786 7.1e-06 53.9 35 74.3
CAN.G171.8 Capsicum annuum HOM05D000958 ORTHO05D000786 9.3e-06 53.5 33 72.7
CAN.G888.11 Capsicum annuum HOM05D000958 ORTHO05D000786 9.3e-06 53.5 33 78.8
Ca_05254_v3 Cicer arietinum L. HOM05D000958 ORTHO05D000786 9.3e-06 53.5 33 78.8
MELO3C025770.2 Cucumis melo HOM05D000958 ORTHO05D000786 9.3e-06 53.5 33 72.7
CsaV3_6G013890 Cucumis sativus L. HOM05D000958 ORTHO05D000786 9.3e-06 53.5 33 72.7
DCAR_022737 Daucus carota HOM05D000958 ORTHO05D000786 9.3e-06 53.5 33 75.8
Lalb_Chr03g0027301 Lupinus albus HOM05D000958 ORTHO05D000786 9.3e-06 53.5 33 78.8


User provided reference genes

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