Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL4G17680 Arabidopsis lyrata HOM05D005974 ORTHO05D007201 3.8e-235 817.8 408 100.0
AT2G25840 Arabidopsis thaliana HOM05D005974 ORTHO05D007201 5.7e-215 750.7 407 91.6
CARHR115390 Cardamine hirsuta HOM05D005974 ORTHO05D007201 1.4e-200 703.0 406 86.0
Carub.0004s0567 Capsella rubella HOM05D005974 ORTHO05D007201 5.2e-200 701.0 409 87.3
Sp4g05700 Schrenkiella parvula HOM05D005974 ORTHO05D007201 2.4e-189 665.6 403 83.4
BraA04t17588Z Brassica rapa HOM05D005974 ORTHO05D007201 1.8e-184 649.4 404 81.7
Thhalv10002003m.g Eutrema salsugineum HOM05D005974 ORTHO05D007201 5.2e-184 647.9 404 80.4
BcaB01g04210 Brassica carinata HOM05D005974 ORTHO05D007201 8.9e-184 647.1 398 82.4
Thhalv10002006m.g Eutrema salsugineum HOM05D005974 ORTHO05D007201 1.2e-183 646.7 405 80.2
BolC4t27100H Brassica oleracea HOM05D005974 ORTHO05D007201 7.5e-183 644.0 404 81.4
A03p15570 Brassica napus HOM05D005974 ORTHO05D007201 5.4e-181 637.9 403 80.6
A04p20060 Brassica napus HOM05D005974 ORTHO05D007201 1.6e-180 636.3 427 77.3
BcaC01g06194 Brassica carinata HOM05D005974 ORTHO05D007201 2.1e-180 636.0 403 80.6
BolC3t14221H Brassica oleracea HOM05D005974 ORTHO05D007201 2.1e-180 636.0 403 80.6
C04p55740 Brassica napus HOM05D005974 ORTHO05D007201 7.8e-180 634.0 427 77.3
C03p18200 Brassica napus HOM05D005974 ORTHO05D007201 1.1e-170 603.6 412 76.5
BcaB06g29640 Brassica carinata HOM05D005974 ORTHO05D007201 2.1e-169 599.4 388 78.4
BraA03t10849Z Brassica rapa HOM05D005974 ORTHO05D007201 6.2e-169 597.8 344 85.8
THA.LOC104803747 Tarenaya hassleriana HOM05D005974 ORTHO05D007201 5.2e-168 594.7 413 73.1
COL.COLO4_20996 Corchorus olitorius HOM05D005974 ORTHO05D007201 2.9e-166 589.0 417 70.5
CiPaw.08G027100 Carya illinoinensis HOM05D005974 ORTHO05D007201 1.4e-165 586.6 411 70.1
PGR044G0481 Punica granatum HOM05D005974 ORTHO05D007201 1.9e-165 586.3 413 70.5
Manes.03G060100 Manihot esculenta HOM05D005974 ORTHO05D007201 3.5e-164 582.0 419 70.6
Ciclev10010686m.g Citrus clementina HOM05D005974 ORTHO05D007201 4.6e-164 581.6 420 70.0
FvH4_2g35300 Fragaria vesca HOM05D005974 ORTHO05D007201 6.0e-164 581.3 413 69.0
FAN20G0082 Fragaria x ananassa HOM05D005974 ORTHO05D007201 1.0e-163 580.5 414 69.6
FAN15G0062 Fragaria x ananassa HOM05D005974 ORTHO05D007201 1.3e-163 580.1 414 69.6
FAN27G3236 Fragaria x ananassa HOM05D005974 ORTHO05D007201 1.3e-163 580.1 413 68.8
SGA_v2.0_scaffold169G38660 Striga asiatica HOM05D005974 ORTHO05D007201 1.3e-163 580.1 369 74.5
Thecc.09G047600 Theobroma cacao HOM05D005974 ORTHO05D007201 1.3e-163 580.1 415 68.9
EL10Ac5g11988 Beta vulgaris HOM05D005974 ORTHO05D007201 6.6e-163 577.8 364 75.8
CsaV3_3G048470 Cucumis sativus L. HOM05D005974 ORTHO05D007201 8.7e-163 577.4 418 69.4
RcHm_v2.0_Chr6g0306611 Rosa chinensis HOM05D005974 ORTHO05D007201 1.1e-162 577.0 412 68.4
TWI63G1635 Tripterygium wilfordii HOM05D005974 ORTHO05D007201 1.1e-162 577.0 411 70.1
Gorai.010G105000 Gossypium raimondii HOM05D005974 ORTHO05D007201 1.5e-162 576.6 413 69.2
ECA246G2549 Erigeron canadensis HOM05D005974 ORTHO05D007201 3.3e-162 575.5 413 68.5
MELO3C003472.2 Cucumis melo HOM05D005974 ORTHO05D007201 4.3e-162 575.1 427 68.4
Migut.E01538 Erythranthe guttata HOM05D005974 ORTHO05D007201 4.3e-162 575.1 417 68.3
Gohir.D06G091000 Gossypium hirsutum HOM05D005974 ORTHO05D007201 4.3e-162 575.1 415 68.9
HanXRQChr06g0174221 Helianthus annuus HOM05D005974 ORTHO05D007201 5.6e-162 574.7 408 69.1
HanXRQChr17g0539061 Helianthus annuus HOM05D005974 ORTHO05D007201 7.3e-162 574.3 407 69.8
Sc09g0009450 Simmondsia chinensis HOM05D005974 ORTHO05D007201 7.3e-162 574.3 406 70.0
CANSAT80G2257 Cannabis sativa HOM05D005974 ORTHO05D007201 9.6e-162 573.9 409 68.9
Oeu006965.1 Olea europaea HOM05D005974 ORTHO05D007201 9.6e-162 573.9 409 69.7
Dinv23389 Davidia involucrata HOM05D005974 ORTHO05D007201 1.2e-161 573.5 412 67.5
PGR044G1757 Punica granatum HOM05D005974 ORTHO05D007201 1.2e-161 573.5 413 69.2
Cpa.g.sc7.214 Carica papaya HOM05D005974 ORTHO05D007201 1.6e-161 573.2 416 69.5
Potri.003G158000 Populus trichocarpa HOM05D005974 ORTHO05D007201 2.1e-161 572.8 420 69.3
MSTRG.14030 Avicennia marina HOM05D005974 ORTHO05D007201 2.8e-161 572.4 417 68.3
Eucgr.C02982 Eucalyptus grandis HOM05D005974 ORTHO05D007201 2.8e-161 572.4 404 69.8
Gohir.A06G091700 Gossypium hirsutum HOM05D005974 ORTHO05D007201 6.2e-161 571.2 419 68.3
MD15G1090800 Malus domestica HOM05D005974 ORTHO05D007201 1.8e-160 569.7 412 68.9
Aa31LG5G9820 Aethionema arabicum HOM05D005974 ORTHO05D007201 3.1e-160 568.9 441 69.2
Lsat_1_v5_gn_3_25800 Lactuca sativa HOM05D005974 ORTHO05D007201 3.1e-160 568.9 363 74.9
Glyma.06G088000 Glycine max HOM05D005974 ORTHO05D007201 4.0e-160 568.5 405 68.9
Nitab4.5_0001309g0090 Nicotiana tabacum HOM05D005974 ORTHO05D007201 5.3e-160 568.2 411 68.4
Sabra03G0114600 Salix brachista HOM05D005974 ORTHO05D007201 5.3e-160 568.2 407 69.5
arahy.Tifrunner.gnm1.ann1.CL6SAC Arachis hypogaea HOM05D005974 ORTHO05D007201 6.9e-160 567.8 417 69.1
Solyc12g095850.2 Solanum lycopersicum HOM05D005974 ORTHO05D007201 3.4e-159 565.5 406 69.0
Sopen12g031750 Solanum pennellii HOM05D005974 ORTHO05D007201 4.4e-159 565.1 406 68.7
Cc08_g09880 Coffea canephora HOM05D005974 ORTHO05D007201 7.6e-159 564.3 409 68.0
Aqoxy7G01418 Aquilegia oxysepala HOM05D005974 ORTHO05D007201 1.3e-158 563.5 416 68.0
Lalb_Chr08g0242951 Lupinus albus HOM05D005974 ORTHO05D007201 2.9e-158 562.4 366 72.7
GSVIVG01035293001 Vitis vinifera HOM05D005974 ORTHO05D007201 8.4e-158 560.8 413 67.3
CSS0034694 Camellia sinensis var. sinensis HOM05D005974 ORTHO05D007201 1.1e-157 560.5 407 68.6
Glyma.04G086500 Glycine max HOM05D005974 ORTHO05D007201 3.2e-157 558.9 404 68.3
Atru.chr7.2057 Acer truncatum HOM05D005974 ORTHO05D007201 7.1e-157 557.8 417 68.3
Phvul.009G111700 Phaseolus vulgaris HOM05D005974 ORTHO05D007201 7.1e-157 557.8 405 68.4
AUR62018617 Chenopodium quinoa HOM05D005974 ORTHO05D007201 9.3e-157 557.4 342 76.0
CAN.G208.66 Capsicum annuum HOM05D005974 ORTHO05D007201 1.2e-156 557.0 410 67.8
Lj1g0014442 Lotus japonicus HOM05D005974 ORTHO05D007201 1.2e-156 557.0 364 73.4
SalBow1G5620 Salvia bowleyana HOM05D005974 ORTHO05D007201 1.3e-155 553.5 445 64.0
Medtr3g110360 Medicago truncatula HOM05D005974 ORTHO05D007201 2.3e-155 552.7 364 73.1
PSO063G5342 Papaver somniferum HOM05D005974 ORTHO05D007201 3.0e-155 552.4 353 74.2
TPR.G12488 Trifolium pratense HOM05D005974 ORTHO05D007201 8.7e-155 550.8 365 72.3
PSO832G2350 Papaver somniferum HOM05D005974 ORTHO05D007201 1.5e-154 550.1 418 66.0
Rhsim02G0175300 Rhododendron simsii HOM05D005974 ORTHO05D007201 1.9e-154 549.7 415 65.8
Actinidia30286 Actinidia chinensis HOM05D005974 ORTHO05D007201 2.5e-154 549.3 414 66.2
ClCG11G015070 Citrullus lanatus HOM05D005974 ORTHO05D007201 4.3e-154 548.5 356 73.9
Ca_15573_v3 Cicer arietinum L. HOM05D005974 ORTHO05D007201 1.3e-153 547.0 362 72.1
ATR0705G128 Amborella trichopoda HOM05D005974 ORTHO05D007201 1.3e-150 537.0 413 65.6
Os01g0743400 Oryza sativa ssp. japonica HOM05D005974 ORTHO05D007201 1.4e-149 533.5 393 68.2
TAR624G1429 Trochodendron aralioides HOM05D005974 ORTHO05D007201 1.2e-148 530.4 330 75.8
Dinv27921 Davidia involucrata HOM05D005974 ORTHO05D007201 8.7e-147 524.2 412 64.8
QL12p041028 Quercus lobata HOM05D005974 ORTHO05D007201 3.7e-145 518.8 367 71.7
AagrBONN_evm.TU.Sc2ySwM_344.1805 Anthoceros agrestis HOM05D005974 ORTHO05D007201 1.4e-144 516.9 353 69.7
Mapoly0137s0001 Marchantia polymorpha HOM05D005974 ORTHO05D007201 4.5e-143 511.9 346 70.2
Nitab4.5_0001737g0060 Nicotiana tabacum HOM05D005974 ORTHO05D007201 7.1e-141 504.6 371 67.9
arahy.Tifrunner.gnm1.ann1.I5HST9 Arachis hypogaea HOM05D005974 ORTHO05D007201 1.8e-139 500.0 417 63.5
CDE02G2857 Ceratophyllum demersum HOM05D005974 ORTHO05D007201 1.8e-139 500.0 318 75.8
Peaxi162Scf00064g01533 Petunia axillaris HOM05D005974 ORTHO05D007201 3.9e-139 498.8 362 67.7
Psat5g020640 Pisum sativum HOM05D005974 ORTHO05D007201 6.7e-139 498.0 319 74.9
Pp3c13_12220 Physcomitrium patens HOM05D005974 ORTHO05D007201 7.4e-138 494.6 356 66.9
MBI04_g20303_MAGBIO Magnolia biondii HOM05D005974 ORTHO05D007201 9.0e-136 487.6 410 63.2
HPP92_024453 Vanilla planifolia HOM05D005974 ORTHO05D007201 1.5e-135 486.9 371 65.0
DCAR_018521 Daucus carota HOM05D005974 ORTHO05D007201 1.0e-134 484.2 302 76.5
Sed0012339 Sechium edule HOM05D005974 ORTHO05D007201 1.3e-134 483.8 329 74.5
AUR62007372 Chenopodium quinoa HOM05D005974 ORTHO05D007201 6.5e-134 481.5 364 64.8
Lj8C569G5 Lonicera japonica HOM05D000602 ORTHO05D001147 2.1e-132 476.5 392 62.5
SMO116G0397 Selaginella moellendorffii HOM05D005974 ORTHO05D007201 1.8e-128 463.4 351 63.2
Duzib187G1338 Durio zibethinus HOM05D005974 ORTHO05D007201 4.1e-128 462.2 398 60.6
VMungo1309G1913 Vigna mungo HOM05D005974 ORTHO05D007201 1.4e-125 453.8 270 80.4
PRCOL_00006768 Prasinoderma coloniale HOM05D005974 ORTHO05D007201 1.6e-124 450.3 353 62.6
vmacro11047 Vaccinium macrocarpon HOM05D005974 ORTHO05D007201 4.3e-122 442.2 432 56.0
SGA_v2.0_scaffold163G38058 Striga asiatica HOM05D005974 ORTHO05D007201 5.3e-120 435.3 344 62.5
MCO14G391 Micromonas commoda HOM05D005974 ORTHO05D007201 6.5e-118 428.3 367 58.6
Nn7g37050 Nelumbo nucifera HOM05D005974 ORTHO05D007201 6.7e-115 418.3 364 58.5
Cre05.g238322 Chlamydomonas reinhardtii HOM05D005974 ORTHO05D007201 1.5e-114 417.2 339 57.8
Hund14385 Selenicereus undatus HOM05D005974 ORTHO05D007201 2.9e-110 402.9 253 73.9
Prupe.1G445200 Prunus persica HOM05D005974 ORTHO05D007201 3.8e-110 402.5 291 70.4
BcaB06g29641 Brassica carinata HOM05D005974 ORTHO05D007201 9.1e-96 354.8 238 76.5
Gohir.D06G090920 Gossypium hirsutum HOM05D005974 ORTHO05D007201 2.5e-93 346.7 212 75.9
HanXRQChr06g0174211 Helianthus annuus HOM05D005974 ORTHO05D007201 3.7e-89 332.8 204 75.5
Zm00001eb153590 Zea mays HOM05D005974 ORTHO05D007201 1.4e-80 304.3 207 72.9
CBR_g26161 Chara braunii HOM05D005974 ORTHO05D007201 2.8e-76 290.0 202 68.3
Haze_27433 Corylus avellana HOM05D005974 ORTHO05D007201 1.9e-64 250.8 278 48.2
Cfa024571 Carpinus fangiana HOM05D005974 ORTHO05D007201 3.4e-50 203.4 380 35.8
Haze_21915 Corylus avellana HOM05D005974 ORTHO05D007201 3.4e-42 176.8 123 74.0
Ah.07g201090 Amaranthus hybridus HOM05D005974 ORTHO05D007201 5.4e-40 169.5 245 41.2
Lsat_1_v5_gn_5_27580 Lactuca sativa HOM05D005974 ORTHO05D007201 2.5e-37 160.6 116 62.1
SEGI_31887 Sequoiadendron giganteum HOM05D005974 ORTHO05D007201 1.3e-33 148.3 102 62.7
SEGI_40033 Sequoiadendron giganteum HOM05D005974 ORTHO05D007201 2.7e-31 140.6 102 69.6
CDE08G1286 Ceratophyllum demersum HOM05D000581 ORTHO05D000412 6.0e-23 112.8 84 64.3
Lsat_1_v5_gn_9_95260 Lactuca sativa HOM05D005974 ORTHO05D007201 1.9e-21 107.8 164 37.8
VMungo1309G1904 Vigna mungo HOM05D005974 ORTHO05D007201 6.2e-20 102.8 105 49.5
Hund30885 Selenicereus undatus HOM05D005974 ORTHO05D007201 1.4e-19 101.7 108 50.9
Hund30611 Selenicereus undatus HOM05D005974 ORTHO05D007201 3.1e-19 100.5 108 50.0
Gohir.D06G090940 Gossypium hirsutum HOM05D005974 ORTHO05D007201 1.6e-12 78.2 44 75.0
Gohir.A05G045550 Gossypium hirsutum HOM05D005974 ORTHO05D007201 1.4e-11 75.1 74 55.4
arahy.Tifrunner.gnm1.ann1.05PEK3 Arachis hypogaea HOM05D005974 ORTHO05D038942 3.8e-09 67.0 100 35.0
CBR_g26165 Chara braunii HOM05D005974 ORTHO05D007201 5.5e-08 63.2 59 57.6
arahy.Tifrunner.gnm1.ann1.8YH8YH Arachis hypogaea HOM05D005974 ORTHO05D007201 2.1e-07 61.2 92 41.3


User provided reference genes

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