Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL4G17450 Arabidopsis lyrata HOM05D008458 ORTHO05D010628 2.2e-285 984.9 503 100.0
AL6G47370 Arabidopsis lyrata HOM05D008458 ORTHO05D010628 1.5e-52 211.5 314 43.0
AL1G61970 Arabidopsis lyrata HOM05D008458 ORTHO05D010628 2.2e-51 207.6 291 42.3
AL4G24140 Arabidopsis lyrata HOM05D008458 ORTHO05D010628 2.9e-51 207.2 297 41.8
AL1G47450 Arabidopsis lyrata HOM05D008458 ORTHO05D010628 3.8e-51 206.8 291 41.2
AL9U10230 Arabidopsis lyrata HOM05D008458 ORTHO05D010628 3.8e-51 206.8 297 41.8
AL1G65160 Arabidopsis lyrata HOM05D008458 ORTHO05D010628 6.5e-51 206.1 291 41.6
AL5G12240 Arabidopsis lyrata HOM05D008458 ORTHO05D010628 1.4e-50 204.9 297 41.4
AL2G23360 Arabidopsis lyrata HOM05D008458 ORTHO05D010628 1.9e-50 204.5 291 41.6
AL6G42690 Arabidopsis lyrata HOM05D008458 ORTHO05D010628 1.9e-50 204.5 324 39.2
AL8G45410 Arabidopsis lyrata HOM05D008458 ORTHO05D010628 1.9e-50 204.5 297 41.4
AL8G20450 Arabidopsis lyrata HOM05D008458 ORTHO05D010628 7.1e-50 202.6 291 41.2
AL4G14310 Arabidopsis lyrata HOM05D008458 ORTHO05D010628 6.0e-49 199.5 290 41.7
AL3G38160 Arabidopsis lyrata HOM05D008458 ORTHO05D010628 7.9e-49 199.1 289 40.8
AL8G11870 Arabidopsis lyrata HOM05D008458 ORTHO05D010628 7.9e-49 199.1 289 41.2
AL1G57330 Arabidopsis lyrata HOM05D008458 ORTHO05D010628 3.9e-48 196.8 289 40.8
AL2G18400 Arabidopsis lyrata HOM05D008458 ORTHO05D010628 1.9e-47 194.5 325 38.8
AT5G32590 Arabidopsis thaliana HOM05D008458 ORTHO05D010628 6.9e-45 186.0 288 42.0
AL3G37710 Arabidopsis lyrata HOM05D008458 ORTHO05D010628 1.2e-44 185.3 291 39.9
AL5G23160 Arabidopsis lyrata HOM05D008458 ORTHO05D010628 4.5e-44 183.3 297 39.7
CARHR115630 Cardamine hirsuta HOM05D008458 ORTHO05D010628 4.5e-44 183.3 228 44.3
AL8G33480 Arabidopsis lyrata HOM05D008458 ORTHO05D010628 1.4e-40 171.8 344 34.6
AL8G10170 Arabidopsis lyrata HOM05D008458 ORTHO05D010628 5.9e-36 156.4 290 35.9
AL6G45550 Arabidopsis lyrata HOM05D008458 ORTHO05D010628 2.1e-33 147.9 289 36.3
AL5G19630 Arabidopsis lyrata HOM05D008458 ORTHO05D010628 3.9e-32 143.7 289 33.9
Carub.0007s3731 Capsella rubella HOM05D009492 ORTHO05D011693 1.5e-31 141.7 355 30.1
Carub.0007s3611 Capsella rubella HOM05D009492 ORTHO05D011693 5.7e-31 139.8 317 30.6
Carub.0008s0728 Capsella rubella HOM05D009492 ORTHO05D011693 9.7e-31 139.0 315 30.2
CARHR053560 Cardamine hirsuta HOM05D008458 ORTHO05D010628 4.1e-29 133.7 149 47.0
AT4G06688 Arabidopsis thaliana HOM05D008458 ORTHO05D010628 4.5e-28 130.2 253 35.2
Carub.0005s0956 Capsella rubella HOM05D009492 ORTHO05D011693 4.5e-28 130.2 205 33.7
CARHR184520 Cardamine hirsuta HOM05D008458 ORTHO05D010628 1.3e-27 128.6 177 40.7
AT1G51172 Arabidopsis thaliana HOM05D009492 ORTHO05D011693 2.2e-27 127.9 365 26.8
CARHR035710 Cardamine hirsuta HOM05D008458 ORTHO05D010628 1.4e-26 125.2 166 40.4
AT4G03830 Arabidopsis thaliana HOM05D009492 ORTHO05D011693 3.2e-26 124.0 369 26.6
CARHR174650 Cardamine hirsuta HOM05D008458 ORTHO05D010628 3.2e-26 124.0 178 41.0
AL2G23320 Arabidopsis lyrata HOM05D009492 ORTHO05D011693 4.2e-26 123.6 399 25.6
AT3G43148 Arabidopsis thaliana HOM05D008458 ORTHO05D010628 4.2e-26 123.6 283 34.3
Carub.0002s1048 Capsella rubella HOM05D009492 ORTHO05D011693 7.2e-26 122.9 246 31.3
Carub.0002s0916 Capsella rubella HOM05D009492 ORTHO05D011693 1.2e-25 122.1 225 32.0
AL1G50390 Arabidopsis lyrata HOM05D009492 ORTHO05D011693 1.0e-24 119.0 340 26.5
CARHR118560 Cardamine hirsuta HOM05D008458 ORTHO05D010628 1.4e-24 118.6 113 54.0
Carub.0003s2742 Capsella rubella HOM05D009492 ORTHO05D011693 2.3e-24 117.9 164 37.2
Carub.0003s2904 Capsella rubella HOM05D006121 ORTHO05D009559 3.0e-24 117.5 203 36.0
Carub.0006s2644 Capsella rubella HOM05D009492 ORTHO05D011693 3.9e-24 117.1 290 28.6
Carub.0002s0942 Capsella rubella HOM05D009492 ORTHO05D011693 1.5e-23 115.2 159 37.7
AT2G11010 Arabidopsis thaliana HOM05D008458 ORTHO05D010628 2.0e-23 114.8 238 33.2
AT1G36100 Arabidopsis thaliana HOM05D008458 ORTHO05D010628 2.2e-22 111.3 157 43.3
Carub.0004s0672 Capsella rubella HOM05D009492 ORTHO05D011693 2.2e-22 111.3 294 27.6
Carub.0002s0975 Capsella rubella HOM05D009492 ORTHO05D011693 1.1e-21 109.0 151 37.1
CARHR105800 Cardamine hirsuta HOM05D008458 ORTHO05D010628 1.8e-21 108.2 107 45.8
AT3G30230 Arabidopsis thaliana HOM05D008458 ORTHO05D010628 2.4e-21 107.8 417 27.1
Carub.0007s3212 Capsella rubella HOM05D009492 ORTHO05D011693 7.0e-21 106.3 298 27.9
BcaC08g42951 Brassica carinata HOM05D006121 ORTHO05D009559 9.1e-21 105.9 205 33.2
Carub.0001s3424 Capsella rubella HOM05D009492 ORTHO05D011693 4.5e-20 103.6 282 27.7
BcaC03g15130 Brassica carinata HOM05D006121 ORTHO05D009559 1.3e-19 102.1 199 36.7
BcaC04g23210 Brassica carinata HOM05D006121 ORTHO05D009559 1.7e-19 101.7 260 34.2
CARHR181090 Cardamine hirsuta HOM05D008458 ORTHO05D010628 3.8e-19 100.5 87 54.0
AL8G19710 Arabidopsis lyrata HOM05D008458 ORTHO05D080020 1.9e-18 98.2 155 40.0
BcaC09g49745 Brassica carinata HOM05D006121 ORTHO05D009559 4.7e-17 93.6 204 31.9
Carub.0004s1788 Capsella rubella HOM05D009492 ORTHO05D011693 4.7e-17 93.6 355 26.2
BcaC03g16521 Brassica carinata HOM05D006121 ORTHO05D009559 1.8e-16 91.7 177 32.2
BcaC01g02238 Brassica carinata HOM05D006121 ORTHO05D009559 2.3e-16 91.3 132 42.4
BcaC03g16227 Brassica carinata HOM05D006121 ORTHO05D009559 8.8e-16 89.4 179 34.6
BcaC05g27675 Brassica carinata HOM05D006121 ORTHO05D009559 8.8e-16 89.4 259 25.9
BcaC07g37147 Brassica carinata HOM05D006121 ORTHO05D009559 1.2e-15 89.0 313 26.2
BcaC05g27793 Brassica carinata HOM05D006121 ORTHO05D009559 2.0e-15 88.2 204 29.4
Carub.0008s0719 Capsella rubella HOM05D009492 ORTHO05D011693 9.7e-15 85.9 212 27.4
BcaC01g02132 Brassica carinata HOM05D006121 ORTHO05D009559 1.7e-14 85.1 205 28.8
Carub.0003s2394 Capsella rubella HOM05D016834 ORTHO05D016863 6.3e-14 83.2 210 26.7
Carub.0073s0002 Capsella rubella HOM05D016834 ORTHO05D016863 8.3e-14 82.8 208 26.9
AT1G46696 Arabidopsis thaliana HOM05D009492 ORTHO05D011693 1.1e-13 82.4 170 28.2
BcaC07g37897 Brassica carinata HOM05D006121 ORTHO05D009559 1.1e-13 82.4 175 35.4
Carub.0006s2612 Capsella rubella HOM05D016834 ORTHO05D016863 1.4e-13 82.0 168 28.0
BolC3t20163H Brassica oleracea HOM05D006121 ORTHO05D009559 2.4e-13 81.3 132 35.6
Carub.0003s2830 Capsella rubella HOM05D009492 ORTHO05D011693 2.4e-13 81.3 184 28.8
BolC5t33453H Brassica oleracea HOM05D003421 ORTHO05D003268 4.1e-13 80.5 248 25.0
BolC9t56748H Brassica oleracea HOM05D003421 ORTHO05D003268 4.1e-13 80.5 229 28.8
BcaC01g05819 Brassica carinata HOM05D006121 ORTHO05D009559 5.3e-13 80.1 198 33.3
BcaC06g36507 Brassica carinata HOM05D006121 ORTHO05D009559 9.1e-13 79.3 300 28.7
BcaC09g49729 Brassica carinata HOM05D006121 ORTHO05D009559 9.1e-13 79.3 140 37.1
Carub.0003s2886 Capsella rubella HOM05D016834 ORTHO05D016863 1.6e-12 78.6 167 27.5
Carub.0108s0001 Capsella rubella HOM05D016834 ORTHO05D016863 1.6e-12 78.6 167 26.9
CARHR150680 Cardamine hirsuta HOM05D008458 ORTHO05D010628 1.6e-12 78.6 63 57.1
Carub.0014s0006 Capsella rubella HOM05D009492 ORTHO05D011693 2.0e-12 78.2 191 28.3
BolC4t23765H Brassica oleracea HOM05D003421 ORTHO05D003268 2.7e-12 77.8 212 25.9
Carub.0008s1221 Capsella rubella HOM05D016834 ORTHO05D016863 2.7e-12 77.8 167 27.5
BcaC02g11248 Brassica carinata HOM05D006121 ORTHO05D009559 3.5e-12 77.4 157 29.3
AT2G15420 Arabidopsis thaliana HOM05D010629 ORTHO05D005680 7.7e-12 76.3 175 28.6
BolC3t19281H Brassica oleracea HOM05D003421 ORTHO05D003268 1.0e-11 75.9 219 27.4
Carub.0007s3091 Capsella rubella HOM05D016834 ORTHO05D016863 1.3e-11 75.5 167 27.5
CARHR104300 Cardamine hirsuta HOM05D008458 ORTHO05D010628 1.3e-11 75.5 130 36.2
CARHR181790 Cardamine hirsuta HOM05D008458 ORTHO05D010628 1.7e-11 75.1 63 55.6
BcaC03g17371 Brassica carinata HOM05D006121 ORTHO05D009559 2.2e-11 74.7 161 34.8
BcaC05g27433 Brassica carinata HOM05D006121 ORTHO05D009559 2.9e-11 74.3 169 34.3
BcaC06g35841 Brassica carinata HOM05D006121 ORTHO05D009559 3.8e-11 73.9 102 39.2
BcaC07g37480 Brassica carinata HOM05D007986 ORTHO05D003268 5.0e-11 73.6 127 32.3
A08p08190 Brassica napus HOM05D008596 ORTHO05D003268 1.1e-10 72.4 219 23.3
Carub.0009s0003 Capsella rubella HOM05D016834 ORTHO05D016863 9.4e-10 69.3 130 29.2
BcaC03g16371 Brassica carinata HOM05D006121 ORTHO05D009559 1.2e-09 68.9 161 33.5
BcaC09g49299 Brassica carinata HOM05D006121 ORTHO05D009559 1.2e-09 68.9 276 27.2
CARHR153510 Cardamine hirsuta HOM05D008458 ORTHO05D010628 1.6e-09 68.6 66 47.0
BolC8t48644H Brassica oleracea HOM05D002078 ORTHO05D005680 3.6e-09 67.4 161 28.6
AL3G49830 Arabidopsis lyrata HOM05D011598 ORTHO05D013181 6.1e-09 66.6 156 29.5
BcaC05g27617 Brassica carinata HOM05D007986 ORTHO05D003268 8.0e-09 66.2 83 38.6
BolC2t10336H Brassica oleracea HOM05D003421 ORTHO05D003268 1.8e-08 65.1 142 31.0
Carub.0002s1012 Capsella rubella HOM05D010629 ORTHO05D005680 1.8e-08 65.1 93 36.6
CARHR182970 Cardamine hirsuta HOM05D009492 ORTHO05D011693 1.8e-08 65.1 83 38.6
Sp7g05200 Schrenkiella parvula HOM05D002078 ORTHO05D005680 1.8e-08 65.1 161 26.1
BcaC01g06835 Brassica carinata HOM05D006121 ORTHO05D009559 2.3e-08 64.7 280 26.1
BcaC02g11960 Brassica carinata HOM05D006121 ORTHO05D009559 5.2e-08 63.5 371 22.6
BolC4t24012H Brassica oleracea HOM05D006121 ORTHO05D009559 5.2e-08 63.5 65 47.7
CSS0037614 Camellia sinensis var. sinensis HOM05D010739 ORTHO05D012209 8.8e-08 62.8 122 32.8
CSS0040956 Camellia sinensis var. sinensis HOM05D035337 ORTHO05D000116 8.8e-08 62.8 134 29.9
AT4G32200 Arabidopsis thaliana HOM05D003724 ORTHO05D004367 1.2e-07 62.4 369 22.5
BolC1t03978H Brassica oleracea HOM05D003421 ORTHO05D003268 1.2e-07 62.4 176 26.1
CARHR218210 Cardamine hirsuta HOM05D008458 ORTHO05D010628 1.2e-07 62.4 64 48.4
BolC5t32328H Brassica oleracea HOM05D007986 ORTHO05D003268 1.5e-07 62.0 82 37.8
AT3G42060 Arabidopsis thaliana HOM05D010629 ORTHO05D005680 2.0e-07 61.6 74 41.9
Carub.0005s0837 Capsella rubella HOM05D010629 ORTHO05D005680 2.6e-07 61.2 83 37.3
AL77U10020 Arabidopsis lyrata HOM05D008458 ORTHO05D010628 3.4e-07 60.8 54 53.7
BcaC07g37265 Brassica carinata HOM05D006121 ORTHO05D009559 3.4e-07 60.8 102 33.3
BcaC09g51377 Brassica carinata HOM05D006121 ORTHO05D009559 3.4e-07 60.8 83 43.4
Sp7g11540 Schrenkiella parvula HOM05D010529 ORTHO05D012528 3.4e-07 60.8 175 23.4
BcaC02g10718 Brassica carinata HOM05D006121 ORTHO05D009559 4.4e-07 60.5 88 34.1
Thhalv10023163m.g Eutrema salsugineum HOM05D010629 ORTHO05D016863 4.4e-07 60.5 125 28.8
Carub.0006s2663 Capsella rubella HOM05D009492 ORTHO05D011693 5.7e-07 60.1 116 30.2
BcaB03g15586 Brassica carinata HOM05D002078 ORTHO05D005680 9.8e-07 59.3 184 26.6
A01p26930 Brassica napus HOM05D008596 ORTHO05D003268 9.8e-07 59.3 149 23.5
Carub.0072s0001 Capsella rubella HOM05D010629 ORTHO05D005680 9.8e-07 59.3 218 26.1
BolC3t19358H Brassica oleracea HOM05D003421 ORTHO05D003268 1.3e-06 58.9 179 26.3
A06p23500 Brassica napus HOM05D008596 ORTHO05D003268 1.7e-06 58.5 173 25.4
BraA01t02722Z Brassica rapa HOM05D003421 ORTHO05D003268 2.2e-06 58.2 387 23.8
BolC8t48271H Brassica oleracea HOM05D003421 ORTHO05D003268 2.8e-06 57.8 186 25.8
BolC4t25137H Brassica oleracea HOM05D003421 ORTHO05D003268 4.8e-06 57.0 214 25.7
BolC8t47514H Brassica oleracea HOM05D003421 ORTHO05D003268 4.8e-06 57.0 199 23.6
CSS0036274 Camellia sinensis var. sinensis HOM05D010739 ORTHO05D012209 6.3e-06 56.6 128 30.5


User provided reference genes

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