Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL4G17390 Arabidopsis lyrata HOM05D012534 ORTHO05D003275 3.6e-61 238.0 118 100.0
AT2G25735 Arabidopsis thaliana HOM05D012534 ORTHO05D003275 4.7e-53 211.1 120 89.2
CARHR115510 Cardamine hirsuta HOM05D012534 ORTHO05D003275 7.0e-49 197.2 118 88.1
Thhalv10000375m.g Eutrema salsugineum HOM05D012534 ORTHO05D003275 2.7e-48 195.3 124 83.1
Carub.0004s0551 Capsella rubella HOM05D012534 ORTHO05D003275 1.1e-46 189.9 130 79.2
Sp4g05350 Schrenkiella parvula HOM05D012534 ORTHO05D003275 4.3e-46 188.0 122 82.0
BolC3t14445H Brassica oleracea HOM05D012534 ORTHO05D003275 1.4e-44 183.0 123 82.1
BcaB01g04038 Brassica carinata HOM05D012534 ORTHO05D003275 1.8e-44 182.6 123 82.1
A03p17690 Brassica napus HOM05D012534 ORTHO05D003275 1.8e-44 182.6 122 81.1
C03p20780 Brassica napus HOM05D012534 ORTHO05D003275 1.8e-44 182.6 123 82.1
BraA03t11034Z Brassica rapa HOM05D012534 ORTHO05D003275 1.8e-44 182.6 122 81.1
Aa31LG5G9940 Aethionema arabicum HOM05D012534 ORTHO05D003275 1.8e-36 156.0 114 76.3
Carub.0005s0152 Capsella rubella HOM05D012534 ORTHO05D003275 3.3e-30 135.2 115 70.4
THA.LOC104803771 Tarenaya hassleriana HOM05D012534 ORTHO05D003275 6.4e-26 120.9 122 61.5
Gohir.A07G024250 Gossypium hirsutum HOM05D003277 ORTHO05D003275 7.6e-11 70.9 97 49.5
Gohir.D07G027850 Gossypium hirsutum HOM05D003277 ORTHO05D003275 7.6e-11 70.9 97 49.5
Gorai.001G029100 Gossypium raimondii HOM05D003277 ORTHO05D003275 7.6e-11 70.9 97 49.5
Manes.03G064500 Manihot esculenta HOM05D003277 ORTHO05D003275 2.9e-10 68.9 99 45.5
Manes.03G064940 Manihot esculenta HOM05D003277 ORTHO05D003275 2.9e-10 68.9 99 45.5
Thecc.09G038300 Theobroma cacao HOM05D003277 ORTHO05D003275 2.9e-10 68.9 96 44.8
COL.COLO4_18709 Corchorus olitorius HOM05D003277 ORTHO05D003275 4.9e-10 68.2 93 46.2
Duzib150G1012 Durio zibethinus HOM05D000818 ORTHO05D003275 6.4e-10 67.8 113 43.4
Cfa003268 Carpinus fangiana HOM05D003277 ORTHO05D003275 1.9e-09 66.2 97 43.3
CiPaw.08G022600 Carya illinoinensis HOM05D003277 ORTHO05D003275 1.9e-09 66.2 108 38.9
Haze_25704 Corylus avellana HOM05D000750 ORTHO05D000714 2.4e-09 65.9 97 43.3
Manes.16G066800 Manihot esculenta HOM05D003277 ORTHO05D003275 2.4e-09 65.9 98 44.9
MBI04_g08935_MAGBIO Magnolia biondii HOM05D003277 ORTHO05D003275 3.2e-09 65.5 66 53.0
RcHm_v2.0_Chr6g0305601 Rosa chinensis HOM05D003277 ORTHO05D003275 3.2e-09 65.5 70 48.6
Nn2g11767 Nelumbo nucifera HOM05D003277 ORTHO05D003275 5.5e-09 64.7 66 51.5
Glyma.14G140500 Glycine max HOM05D003277 ORTHO05D003275 9.3e-09 63.9 111 42.3
Nn8g39213 Nelumbo nucifera HOM05D003277 ORTHO05D003275 9.3e-09 63.9 66 54.5
Gohir.A05G049100 Gossypium hirsutum HOM05D003277 ORTHO05D003275 1.2e-08 63.5 93 43.0
Haze_21824 Corylus avellana HOM05D003277 ORTHO05D003275 1.6e-08 63.2 110 40.0
Gohir.D05G051000 Gossypium hirsutum HOM05D003277 ORTHO05D003275 1.6e-08 63.2 92 43.5
Gorai.009G052600 Gossypium raimondii HOM05D003277 ORTHO05D003275 1.6e-08 63.2 92 43.5
Cfa013333 Carpinus fangiana HOM05D003277 ORTHO05D003275 2.1e-08 62.8 110 40.9
Thecc.09G112200 Theobroma cacao HOM05D003277 ORTHO05D003275 2.1e-08 62.8 63 54.0
Duzib150G0682 Durio zibethinus HOM05D003277 ORTHO05D003275 3.5e-08 62.0 64 54.7
FvH4_2g36280 Fragaria vesca HOM05D003277 ORTHO05D003275 3.5e-08 62.0 70 45.7
FAN15G2136 Fragaria x ananassa HOM05D003277 ORTHO05D003275 3.5e-08 62.0 70 45.7
FAN27G2228 Fragaria x ananassa HOM05D003277 ORTHO05D003275 3.5e-08 62.0 70 45.7
COL.COLO4_34902 Corchorus olitorius HOM05D003277 ORTHO05D003275 7.9e-08 60.8 63 50.8
FAN20G0113 Fragaria x ananassa HOM05D003277 ORTHO05D003275 7.9e-08 60.8 70 45.7
Glyma.06G080800 Glycine max HOM05D003277 ORTHO05D003275 1.0e-07 60.5 116 40.5
Phvul.009G105000 Phaseolus vulgaris HOM05D003277 ORTHO05D003275 1.0e-07 60.5 96 41.7
Cpa.g.sc205.7 Carica papaya HOM05D003277 ORTHO05D003275 1.8e-07 59.7 84 41.7
Glyma.07G087300 Glycine max HOM05D003277 ORTHO05D003275 1.8e-07 59.7 67 53.7
Hma1.2p1_0018F.1_g013430 Hydrangea macrophylla HOM05D003277 ORTHO05D003275 1.8e-07 59.7 92 44.6
Medtr8g083490 Medicago truncatula HOM05D003277 ORTHO05D003275 1.8e-07 59.7 103 40.8
Sabra06G0191100 Salix brachista HOM05D003277 ORTHO05D003275 1.8e-07 59.7 105 41.0
Phvul.002G313800 Phaseolus vulgaris HOM05D003277 ORTHO05D003275 3.0e-07 58.9 69 49.3
TPR.G12111 Trifolium pratense HOM05D003277 ORTHO05D003275 3.0e-07 58.9 107 42.1
QL02p085574 Quercus lobata HOM05D003277 ORTHO05D003275 3.9e-07 58.5 91 41.8
Ciclev10026796m.g Citrus clementina HOM05D003277 ORTHO05D003275 5.1e-07 58.2 69 47.8
Prupe.7G229300 Prunus persica HOM05D003277 ORTHO05D003275 5.1e-07 58.2 65 49.2
Glyma.05G231600 Glycine max HOM05D003277 ORTHO05D003275 6.7e-07 57.8 69 49.3
Glyma.04G079300 Glycine max HOM05D003277 ORTHO05D003275 8.7e-07 57.4 116 39.7
VMungo0251G2336 Vigna mungo HOM05D003277 ORTHO05D003275 1.1e-06 57.0 102 43.1
arahy.Tifrunner.gnm1.ann1.R7R2S9 Arachis hypogaea HOM05D003277 ORTHO05D003275 1.5e-06 56.6 99 45.5
Manes.04G123700 Manihot esculenta HOM05D003277 ORTHO05D003275 1.5e-06 56.6 95 38.9
Atru.chr7.2298 Acer truncatum HOM05D003277 ORTHO05D003275 1.9e-06 56.2 98 36.7
Ca_15626_v3 Cicer arietinum L. HOM05D003277 ORTHO05D003275 1.9e-06 56.2 65 47.7
Ciclev10010574m.g Citrus clementina HOM05D003277 ORTHO05D003275 1.9e-06 56.2 62 51.6
Glyma.09G189600 Glycine max HOM05D003277 ORTHO05D003275 1.9e-06 56.2 67 50.7
Lj1g0024029 Lotus japonicus HOM05D003277 ORTHO05D003275 1.9e-06 56.2 112 37.5
Cc04_g03410 Coffea canephora HOM05D003277 ORTHO05D003275 2.5e-06 55.8 66 48.5
Potri.006G244200 Populus trichocarpa HOM05D003277 ORTHO05D003275 2.5e-06 55.8 105 39.0
Gohir.A07G006900 Gossypium hirsutum HOM05D003277 ORTHO05D003275 3.3e-06 55.5 64 51.6
Gorai.001G004600 Gossypium raimondii HOM05D003277 ORTHO05D003275 3.3e-06 55.5 64 51.6
Potri.018G036300 Populus trichocarpa HOM05D003277 ORTHO05D003275 4.3e-06 55.1 96 36.5
Solyc05g039960.1 Solanum lycopersicum HOM05D001431 ORTHO05D001268 4.3e-06 55.1 58 46.6
Nitab4.5_0001952g0050 Nicotiana tabacum HOM05D001431 ORTHO05D001268 5.6e-06 54.7 58 46.6
Nitab4.5_0007879g0040 Nicotiana tabacum HOM05D001431 ORTHO05D001268 5.6e-06 54.7 58 46.6
Solyc02g087030.1 Solanum lycopersicum HOM05D001431 ORTHO05D001268 5.6e-06 54.7 58 46.6
Sopen02g031790 Solanum pennellii HOM05D001431 ORTHO05D001268 5.6e-06 54.7 58 46.6
Atru.chr1.3275 Acer truncatum HOM05D003277 ORTHO05D003275 7.4e-06 54.3 65 46.2
Cc02_g27850 Coffea canephora HOM05D003277 ORTHO05D003275 7.4e-06 54.3 66 47.0
Aqoxy7G01700 Aquilegia oxysepala HOM05D003277 ORTHO05D003275 9.6e-06 53.9 63 47.6
COL.COLO4_30383 Corchorus olitorius HOM05D003277 ORTHO05D003275 9.6e-06 53.9 87 39.1
Gohir.D07G005000 Gossypium hirsutum HOM05D003277 ORTHO05D003275 9.6e-06 53.9 64 50.0
Manes.11G047000 Manihot esculenta HOM05D003277 ORTHO05D003275 9.6e-06 53.9 108 36.1
Medtr3g109430 Medicago truncatula HOM05D003277 ORTHO05D003275 9.6e-06 53.9 72 47.2


User provided reference genes

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