Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL4G17180 Arabidopsis lyrata HOM05D003461 ORTHO05D004386 2.2e-194 682.2 354 100.0
Carub.0004s0545 Capsella rubella HOM05D003461 ORTHO05D004386 5.9e-176 620.9 394 84.8
AT2G25660 Arabidopsis thaliana HOM05D003461 ORTHO05D004386 1.3e-175 619.8 397 84.9
CARHR115590 Cardamine hirsuta HOM05D003461 ORTHO05D004386 2.1e-173 612.5 397 83.4
AL4G17260 Arabidopsis lyrata HOM05D003461 ORTHO05D004386 2.8e-173 612.1 397 82.9
Thhalv10000008m.g Eutrema salsugineum HOM05D003461 ORTHO05D004386 4.4e-171 604.7 397 82.1
BcaC02g08333 Brassica carinata HOM05D003461 ORTHO05D004386 3.7e-170 601.7 397 81.1
BraA04t17575Z Brassica rapa HOM05D003461 ORTHO05D004386 6.3e-170 600.9 397 81.1
Sp4g05280 Schrenkiella parvula HOM05D003461 ORTHO05D004386 6.3e-170 600.9 398 81.2
A04p19870 Brassica napus HOM05D003461 ORTHO05D004386 1.8e-169 599.4 397 80.9
BcaB06g28084 Brassica carinata HOM05D003461 ORTHO05D004386 2.4e-169 599.0 397 80.9
C04p55600 Brassica napus HOM05D003461 ORTHO05D004386 9.2e-169 597.0 398 80.9
BolC4t27084H Brassica oleracea HOM05D003461 ORTHO05D004386 9.2e-169 597.0 398 80.9
Aa31sc76G80 Aethionema arabicum HOM05D003461 ORTHO05D004386 2.1e-165 585.9 395 79.7
THA.LOC104819890 Tarenaya hassleriana HOM05D003461 ORTHO05D004386 1.4e-161 573.2 400 77.8
Manes.13G069700 Manihot esculenta HOM05D003461 ORTHO05D004386 4.0e-156 555.1 398 74.4
Cpa.g.sc91.7 Carica papaya HOM05D003461 ORTHO05D004386 1.2e-155 553.5 398 73.9
COL.COLO4_24068 Corchorus olitorius HOM05D003461 ORTHO05D004386 1.5e-155 553.1 397 75.1
Haze_21625 Corylus avellana HOM05D003461 ORTHO05D004386 3.4e-155 552.0 398 74.1
Thecc.09G143900 Theobroma cacao HOM05D003461 ORTHO05D004386 3.4e-155 552.0 397 74.3
Ciclev10007226m.g Citrus clementina HOM05D003461 ORTHO05D004386 9.8e-155 550.4 398 73.6
Gohir.A06G048100 Gossypium hirsutum HOM05D003461 ORTHO05D004386 1.3e-154 550.1 398 73.6
Gorai.010G053900 Gossypium raimondii HOM05D003461 ORTHO05D004386 1.3e-154 550.1 398 73.6
Atru.chr7.2323 Acer truncatum HOM05D003461 ORTHO05D004386 1.7e-154 549.7 398 74.1
Duzib168G0147 Durio zibethinus HOM05D003461 ORTHO05D004386 1.7e-154 549.7 398 73.6
Gohir.D05G011400 Gossypium hirsutum HOM05D003461 ORTHO05D004386 1.7e-154 549.7 398 74.4
Gorai.009G011800 Gossypium raimondii HOM05D003461 ORTHO05D004386 1.7e-154 549.7 398 74.4
Gohir.A05G010700 Gossypium hirsutum HOM05D003461 ORTHO05D004386 3.7e-154 548.5 398 74.1
Gohir.D06G048050 Gossypium hirsutum HOM05D003461 ORTHO05D004386 3.7e-154 548.5 398 73.4
CiPaw.07G217600 Carya illinoinensis HOM05D003461 ORTHO05D004386 1.6e-152 543.1 399 73.2
Dinv30215 Davidia involucrata HOM05D003461 ORTHO05D004386 3.9e-151 538.5 397 72.8
CSS0003133 Camellia sinensis var. sinensis HOM05D003461 ORTHO05D004386 5.0e-151 538.1 397 73.0
Potri.018G034700 Populus trichocarpa HOM05D003461 ORTHO05D004386 6.6e-151 537.7 397 73.3
Actinidia14639 Actinidia chinensis HOM05D003461 ORTHO05D004386 1.1e-150 537.0 397 73.0
RcHm_v2.0_Chr6g0312731 Rosa chinensis HOM05D003461 ORTHO05D004386 1.5e-150 536.6 396 72.5
PGR044G2079 Punica granatum HOM05D003461 ORTHO05D004386 3.3e-150 535.4 395 71.6
Sabra18G0035400 Salix brachista HOM05D003461 ORTHO05D004386 5.6e-150 534.6 397 72.0
FAN15G0070 Fragaria x ananassa HOM05D003461 ORTHO05D004386 3.6e-149 531.9 396 71.7
TWI34G1710 Tripterygium wilfordii HOM05D003461 ORTHO05D004386 3.6e-149 531.9 397 71.8
FAN27G2808 Fragaria x ananassa HOM05D003461 ORTHO05D004386 1.8e-148 529.6 396 71.2
MD08G1135800 Malus domestica HOM05D003461 ORTHO05D004386 2.3e-148 529.3 397 71.5
FAN24G1347 Fragaria x ananassa HOM05D003461 ORTHO05D004386 4.0e-148 528.5 396 71.5
Lj7C712G4 Lonicera japonica HOM05D003461 ORTHO05D004386 5.2e-148 528.1 397 72.3
Cc08_g08280 Coffea canephora HOM05D003461 ORTHO05D004386 8.9e-148 527.3 397 72.0
Duzib150G1527 Durio zibethinus HOM05D003461 ORTHO05D004386 8.9e-148 527.3 395 71.9
Actinidia15711 Actinidia chinensis HOM05D003461 ORTHO05D004386 1.2e-147 526.9 397 72.5
Hund28667 Selenicereus undatus HOM05D003461 ORTHO05D004386 1.2e-147 526.9 398 70.9
Hund28681 Selenicereus undatus HOM05D003461 ORTHO05D004386 1.2e-147 526.9 398 70.9
FAN20G1067 Fragaria x ananassa HOM05D003461 ORTHO05D004386 2.0e-147 526.2 396 71.0
FvH4_2g30180 Fragaria vesca HOM05D003461 ORTHO05D004386 2.6e-147 525.8 396 71.5
Nitab4.5_0009600g0030 Nicotiana tabacum HOM05D003461 ORTHO05D004386 3.4e-147 525.4 393 72.3
Sc09g0008870 Simmondsia chinensis HOM05D003461 ORTHO05D004386 3.4e-147 525.4 400 71.0
Sopen08g021790 Solanum pennellii HOM05D003461 ORTHO05D004386 7.5e-147 524.2 393 71.8
DCAR_006261 Daucus carota HOM05D003461 ORTHO05D004386 1.3e-146 523.5 396 71.0
Migut.A00272 Erythranthe guttata HOM05D003461 ORTHO05D004386 4.1e-145 518.5 394 70.8
EL10Ac2g02534 Beta vulgaris HOM05D003461 ORTHO05D004386 5.4e-145 518.1 392 70.9
Phvul.001G055800 Phaseolus vulgaris HOM05D003461 ORTHO05D004386 2.1e-144 516.2 400 69.0
CAN.G21.14 Capsicum annuum HOM05D003461 ORTHO05D004386 2.7e-144 515.8 393 70.7
AUR62032384 Chenopodium quinoa HOM05D003461 ORTHO05D004386 5.1e-143 511.5 401 69.8
TAR383G0906 Trochodendron aralioides HOM05D003461 ORTHO05D004386 1.1e-142 510.4 397 69.8
AUR62024833 Chenopodium quinoa HOM05D003461 ORTHO05D004386 1.5e-142 510.0 401 69.6
Oeu019417.3 Olea europaea HOM05D003461 ORTHO05D004386 1.5e-142 510.0 398 68.1
Lalb_Chr11g0063991 Lupinus albus HOM05D003461 ORTHO05D004386 2.5e-142 509.2 399 68.9
Ah.12g063310 Amaranthus hybridus HOM05D003461 ORTHO05D004386 4.3e-142 508.4 398 69.1
HanXRQChr08g0221141 Helianthus annuus HOM05D003461 ORTHO05D004386 4.3e-142 508.4 398 69.6
Glyma.17G204000 Glycine max HOM05D003461 ORTHO05D004386 7.3e-142 507.7 401 69.6
Lj5g0000879 Lotus japonicus HOM05D003461 ORTHO05D004386 8.1e-141 504.2 400 68.8
Peaxi162Scf00105g00133 Petunia axillaris HOM05D003461 ORTHO05D004386 8.1e-141 504.2 312 82.1
Prupe.1G466400 Prunus persica HOM05D003461 ORTHO05D004386 1.1e-140 503.8 313 81.8
SGA_v2.0_scaffold27G11498 Striga asiatica HOM05D003461 ORTHO05D004386 1.1e-140 503.8 399 68.7
Aqoxy7G01835 Aquilegia oxysepala HOM05D003461 ORTHO05D004386 1.4e-140 503.4 395 67.6
unitig_747.g21880 Utricularia gibba HOM05D003461 ORTHO05D004386 1.8e-140 503.1 396 68.9
Eucgr.C02859 Eucalyptus grandis HOM05D003461 ORTHO05D004386 5.2e-140 501.5 395 67.8
GSVIVG01035727001 Vitis vinifera HOM05D003461 ORTHO05D004386 1.2e-139 500.4 393 69.0
Psat6g031040 Pisum sativum HOM05D003461 ORTHO05D004386 2.0e-139 499.6 399 67.9
Dinv35880 Davidia involucrata HOM05D003461 ORTHO05D004386 2.6e-139 499.2 376 72.1
Medtr1g010300 Medicago truncatula HOM05D003461 ORTHO05D004386 1.3e-138 496.9 399 67.4
Glyma.14G129400 Glycine max HOM05D003461 ORTHO05D004386 1.7e-138 496.5 401 68.8
Lsat_1_v5_gn_5_45581 Lactuca sativa HOM05D003461 ORTHO05D004386 4.9e-138 495.0 407 67.6
CANSAT01G0438 Cannabis sativa HOM05D003461 ORTHO05D004386 8.4e-138 494.2 392 68.1
ECA240G1832 Erigeron canadensis HOM05D003461 ORTHO05D004386 7.1e-137 491.1 398 68.6
arahy.Tifrunner.gnm1.ann1.3VS957 Arachis hypogaea HOM05D003461 ORTHO05D004386 2.7e-136 489.2 408 65.7
MD15G1115200 Malus domestica HOM05D003461 ORTHO05D004386 4.6e-136 488.4 396 66.9
Nitab4.5_0000125g0130 Nicotiana tabacum HOM05D003461 ORTHO05D004386 6.0e-136 488.0 371 70.9
Os01g0179400 Oryza sativa ssp. japonica HOM05D003461 ORTHO05D004386 1.3e-135 486.9 390 67.7
Nn2g11834 Nelumbo nucifera HOM05D003461 ORTHO05D004386 2.3e-135 486.1 399 67.7
Zm00001eb122270 Zea mays HOM05D003461 ORTHO05D004386 2.3e-135 486.1 384 67.4
arahy.Tifrunner.gnm1.ann1.4R6GA4 Arachis hypogaea HOM05D003461 ORTHO05D004386 3.9e-135 485.3 393 66.7
HPP92_015152 Vanilla planifolia HOM05D003461 ORTHO05D004386 2.5e-134 482.6 391 66.2
PSO063G5065 Papaver somniferum HOM05D003461 ORTHO05D004386 1.8e-132 476.5 397 65.2
PSO782G2185 Papaver somniferum HOM05D003461 ORTHO05D004386 1.8e-132 476.5 397 65.2
TPR.G20094 Trifolium pratense HOM05D003461 ORTHO05D004386 2.9e-130 469.2 399 64.7
CDE07G0137 Ceratophyllum demersum HOM05D003461 ORTHO05D004386 4.9e-130 468.4 275 86.2
ClCG05G017220 Citrullus lanatus HOM05D003461 ORTHO05D004386 1.9e-129 466.5 399 64.4
Solyc08g067860.2 Solanum lycopersicum HOM05D003461 ORTHO05D004386 1.6e-128 463.4 393 66.2
ATR0037G074 Amborella trichopoda HOM05D003461 ORTHO05D004386 2.1e-128 463.0 395 64.6
SalBow4G0560 Salvia bowleyana HOM05D003461 ORTHO05D004386 1.7e-127 459.9 403 64.8
Sed0017351 Sechium edule HOM05D003461 ORTHO05D004386 8.1e-125 451.1 399 63.2
CsaV3_3G046700 Cucumis sativus L. HOM05D003461 ORTHO05D004386 2.9e-122 442.6 422 59.5
Rhsim07G0154200 Rhododendron simsii HOM05D003461 ORTHO05D004386 7.1e-121 438.0 272 83.5
MELO3C003666.2 Cucumis melo HOM05D003461 ORTHO05D004386 3.5e-120 435.6 429 58.3
Glyma.04G072400 Glycine max HOM05D003461 ORTHO05D004386 1.3e-114 417.2 399 58.1
VMungo1309G1485 Vigna mungo HOM05D003461 ORTHO05D004386 4.9e-114 415.2 399 57.9
Lj1g0021913 Lotus japonicus HOM05D003461 ORTHO05D004386 2.4e-113 412.9 394 58.6
Glyma.06G073700 Glycine max HOM05D003461 ORTHO05D004386 3.2e-113 412.5 399 57.1
Psat5g027760 Pisum sativum HOM05D003461 ORTHO05D004386 6.2e-109 398.3 392 56.6
Mapoly0004s0170 Marchantia polymorpha HOM05D003461 ORTHO05D004386 4.0e-108 395.6 270 75.6
Medtr3g108080 Medicago truncatula HOM05D003461 ORTHO05D004386 1.0e-106 391.0 397 55.4
TPR.G34693 Trifolium pratense HOM05D003461 ORTHO05D004386 2.9e-106 389.4 312 64.7
Pp3c4_150 Physcomitrium patens HOM05D003461 ORTHO05D004386 2.7e-104 382.9 278 71.2
CBR_g20101 Chara braunii HOM05D003461 ORTHO05D004386 1.5e-102 377.1 390 55.4
SMO347G0057 Selaginella moellendorffii HOM05D003461 ORTHO05D004386 1.1e-100 370.9 352 58.2
Ca_15696_v3 Cicer arietinum L. HOM05D003461 ORTHO05D004386 1.5e-83 313.9 308 55.2
MCO11G459 Micromonas commoda HOM05D003461 ORTHO05D004386 3.7e-69 266.2 298 47.0
VMungo0647G2469 Vigna mungo HOM05D003461 ORTHO05D004386 1.3e-66 257.7 260 54.6
VMungo0647G2587 Vigna mungo HOM05D003461 ORTHO05D004386 4.0e-63 246.1 146 87.7
Zm00001eb088480 Zea mays HOM05D003461 ORTHO05D004386 8.9e-55 218.4 117 94.9
Zm00001eb305240 Zea mays HOM05D003461 ORTHO05D004386 1.8e-47 194.1 107 93.5
SEGI_10354 Sequoiadendron giganteum HOM05D003461 ORTHO05D004386 9.8e-46 188.3 257 44.0
Cre05.g243150 Chlamydomonas reinhardtii HOM05D003461 ORTHO05D004386 8.1e-32 142.1 335 29.6
Gorai.013G159000 Gossypium raimondii HOM05D003461 ORTHO05D004386 7.5e-30 135.6 87 77.0
Gohir.D13G142100 Gossypium hirsutum HOM05D003461 ORTHO05D004386 9.9e-30 135.2 85 77.6
Gohir.D10G105800 Gossypium hirsutum HOM05D003461 ORTHO05D004386 1.7e-29 134.4 90 74.4
VMungo0647G0881 Vigna mungo HOM05D003461 ORTHO05D004386 3.5e-27 126.7 134 53.0
Gohir.D01G114000 Gossypium hirsutum HOM05D003461 ORTHO05D004386 1.5e-25 121.3 71 80.3
AagrBONN_evm.TU.Sc2ySwM_228.5632 Anthoceros agrestis HOM05D003461 ORTHO05D004386 1.3e-21 108.2 151 44.4
RcHm_v2.0_Chr1g0381071 Rosa chinensis HOM05D003461 ORTHO05D004386 4.9e-21 106.3 57 91.2
RcHm_v2.0_Chr4g0412921 Rosa chinensis HOM05D003461 ORTHO05D004386 3.2e-20 103.6 57 89.5
Potri.006G246401 Populus trichocarpa HOM05D003461 ORTHO05D004386 1.1e-15 88.6 54 85.2
HPP92_015177 Vanilla planifolia HOM05D003461 ORTHO05D004386 1.2e-11 75.1 161 37.3
EL10Ac2g02535 Beta vulgaris HOM05D003461 ORTHO05D089362 6.9e-07 59.3 153 32.0


User provided reference genes

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