Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL4G16610 Arabidopsis lyrata HOM05D005419 ORTHO05D007365 4.4e-169 597.8 292 100.0
Carub.0004s0490 Capsella rubella HOM05D005419 ORTHO05D007365 7.8e-166 587.0 292 97.6
AT2G25280 Arabidopsis thaliana HOM05D005419 ORTHO05D007365 1.5e-164 582.8 292 97.3
Thhalv10000272m.g Eutrema salsugineum HOM05D005419 ORTHO05D007365 2.0e-161 572.4 292 95.2
BcaB08g35172 Brassica carinata HOM05D005419 ORTHO05D007365 7.6e-161 570.5 292 94.5
Sp4g04430 Schrenkiella parvula HOM05D005419 ORTHO05D007365 7.1e-159 563.9 292 93.8
BcaB06g28051 Brassica carinata HOM05D005419 ORTHO05D007365 9.3e-159 563.5 290 93.8
A09p55730 Brassica napus HOM05D005419 ORTHO05D007365 1.3e-157 559.7 290 92.4
BraA09t40974Z Brassica rapa HOM05D005419 ORTHO05D007365 1.3e-157 559.7 290 92.4
C08p38730 Brassica napus HOM05D005419 ORTHO05D007365 5.1e-157 557.8 290 92.1
BolC8t51443H Brassica oleracea HOM05D005419 ORTHO05D007365 5.1e-157 557.8 290 92.1
BcaC07g40875 Brassica carinata HOM05D005419 ORTHO05D007365 1.1e-156 556.6 287 92.7
A04p19650 Brassica napus HOM05D005419 ORTHO05D007365 1.1e-156 556.6 290 92.4
BraA04t17556Z Brassica rapa HOM05D005419 ORTHO05D007365 1.1e-156 556.6 290 92.4
BolC4t27063H Brassica oleracea HOM05D005419 ORTHO05D007365 1.5e-156 556.2 292 92.5
C04p55260 Brassica napus HOM05D005419 ORTHO05D007365 3.3e-156 555.1 292 92.1
BcaC02g08359 Brassica carinata HOM05D005419 ORTHO05D007365 7.3e-156 553.9 292 91.8
Aa31sc229G10 Aethionema arabicum HOM05D005419 ORTHO05D007365 6.2e-155 550.8 292 90.4
CARHR116260 Cardamine hirsuta HOM05D005419 ORTHO05D007365 1.6e-147 526.2 294 86.7
THA.LOC104805589 Tarenaya hassleriana HOM05D005419 ORTHO05D007365 2.6e-145 518.8 292 85.6
MD15G1129200 Malus domestica HOM05D005419 ORTHO05D007365 2.1e-142 509.2 292 81.8
RcHm_v2.0_Chr6g0297381 Rosa chinensis HOM05D005419 ORTHO05D007365 2.7e-142 508.8 292 81.8
TWI34G1484 Tripterygium wilfordii HOM05D005419 ORTHO05D007365 4.6e-142 508.1 292 82.2
PGR119G2552 Punica granatum HOM05D005419 ORTHO05D007365 7.9e-142 507.3 292 81.8
CiPaw.07G226000 Carya illinoinensis HOM05D005419 ORTHO05D007365 1.0e-141 506.9 292 80.8
MD08G1152600 Malus domestica HOM05D005419 ORTHO05D007365 1.8e-141 506.1 292 81.5
EL10Ac2g04167 Beta vulgaris HOM05D005419 ORTHO05D007365 2.3e-141 505.8 292 82.5
Duzib150G0083 Durio zibethinus HOM05D005419 ORTHO05D007365 2.3e-141 505.8 292 81.5
Phvul.001G049700 Phaseolus vulgaris HOM05D005419 ORTHO05D007365 3.0e-141 505.4 288 80.9
Sed0010362 Sechium edule HOM05D005419 ORTHO05D007365 3.9e-141 505.0 290 81.0
Dinv15871 Davidia involucrata HOM05D005419 ORTHO05D007365 1.1e-140 503.4 292 80.1
CsaV3_2G032220 Cucumis sativus L. HOM05D005419 ORTHO05D007365 1.5e-140 503.1 292 80.5
Atru.chr7.2482 Acer truncatum HOM05D005419 ORTHO05D007365 1.9e-140 502.7 290 80.3
CANSAT25G3306 Cannabis sativa HOM05D005419 ORTHO05D007365 2.5e-140 502.3 289 81.3
Manes.16G125000 Manihot esculenta HOM05D005419 ORTHO05D007365 2.5e-140 502.3 292 80.5
Hma1.2p1_0974F.1_g243070 Hydrangea macrophylla HOM05D005419 ORTHO05D007365 4.3e-140 501.5 292 80.5
QL02p020871 Quercus lobata HOM05D005419 ORTHO05D007365 5.6e-140 501.1 290 81.0
VMungo0647G0032 Vigna mungo HOM05D005419 ORTHO05D007365 7.4e-140 500.7 288 80.2
Cfa013117 Carpinus fangiana HOM05D005419 ORTHO05D007365 9.6e-140 500.4 292 80.1
Ciclev10009082m.g Citrus clementina HOM05D005419 ORTHO05D007365 9.6e-140 500.4 292 80.8
MELO3C011274.2 Cucumis melo HOM05D005419 ORTHO05D007365 9.6e-140 500.4 292 80.8
FvH4_2g28610 Fragaria vesca HOM05D005419 ORTHO05D007365 1.3e-139 500.0 292 80.8
FAN24G2053 Fragaria x ananassa HOM05D005419 ORTHO05D007365 1.3e-139 500.0 292 80.8
Gohir.D05G058700 Gossypium hirsutum HOM05D005419 ORTHO05D007365 1.3e-139 500.0 292 79.8
Gorai.009G059800 Gossypium raimondii HOM05D005419 ORTHO05D007365 1.3e-139 500.0 292 79.8
ECA248G3461 Erigeron canadensis HOM05D005419 ORTHO05D007365 1.6e-139 499.6 290 81.0
Gorai.010G116600 Gossypium raimondii HOM05D005419 ORTHO05D007365 1.6e-139 499.6 292 80.1
FAN20G2331 Fragaria x ananassa HOM05D005419 ORTHO05D007365 2.8e-139 498.8 292 80.5
Glyma.14G113800 Glycine max HOM05D005419 ORTHO05D007365 3.7e-139 498.4 288 80.2
Gohir.A06G099500 Gossypium hirsutum HOM05D005419 ORTHO05D007365 3.7e-139 498.4 292 79.8
CSS0019044 Camellia sinensis var. sinensis HOM05D005419 ORTHO05D007365 4.8e-139 498.0 292 79.8
Potri.018G023700 Populus trichocarpa HOM05D005419 ORTHO05D007365 8.1e-139 497.3 292 79.8
Thecc.09G020800 Theobroma cacao HOM05D005419 ORTHO05D007365 1.1e-138 496.9 294 79.9
Medtr1g012830 Medicago truncatula HOM05D005419 ORTHO05D007365 1.4e-138 496.5 288 80.2
GSVIVG01035939001 Vitis vinifera HOM05D005419 ORTHO05D007365 1.8e-138 496.1 292 78.8
Eucgr.K02838 Eucalyptus grandis HOM05D005419 ORTHO05D007365 2.4e-138 495.7 292 79.5
Gohir.D06G101700 Gossypium hirsutum HOM05D005419 ORTHO05D007365 2.4e-138 495.7 292 79.5
arahy.Tifrunner.gnm1.ann1.2DG9CD Arachis hypogaea HOM05D005419 ORTHO05D007365 3.1e-138 495.4 287 80.5
arahy.Tifrunner.gnm1.ann1.X3TF0E Arachis hypogaea HOM05D005419 ORTHO05D007365 3.1e-138 495.4 287 80.5
DCAR_003104 Daucus carota HOM05D005419 ORTHO05D007365 4.0e-138 495.0 290 79.3
Lj5g0012746 Lotus japonicus HOM05D005419 ORTHO05D007365 4.0e-138 495.0 288 79.9
SalBow4G1212 Salvia bowleyana HOM05D005419 ORTHO05D007365 4.0e-138 495.0 292 80.1
TAR383G1021 Trochodendron aralioides HOM05D005419 ORTHO05D007365 4.0e-138 495.0 290 79.3
Cc08_g00340 Coffea canephora HOM05D005419 ORTHO05D007365 5.3e-138 494.6 292 78.8
Peaxi162Scf00935g00015 Petunia axillaris HOM05D005419 ORTHO05D007365 5.3e-138 494.6 292 79.8
Nn2g12192 Nelumbo nucifera HOM05D005419 ORTHO05D007365 9.0e-138 493.8 290 80.0
Ca_13036_v3 Cicer arietinum L. HOM05D005419 ORTHO05D007365 1.2e-137 493.4 288 79.5
TPR.G14021 Trifolium pratense HOM05D005419 ORTHO05D007365 2.6e-137 492.3 287 79.8
Aqoxy7G03594 Aquilegia oxysepala HOM05D005419 ORTHO05D007365 5.8e-137 491.1 290 80.0
Psat6g028000 Pisum sativum HOM05D005419 ORTHO05D007365 1.0e-136 490.3 288 78.8
Nitab4.5_0014723g0010 Nicotiana tabacum HOM05D005419 ORTHO05D007365 1.3e-136 490.0 292 79.5
AUR62012434 Chenopodium quinoa HOM05D005419 ORTHO05D007365 4.9e-136 488.0 290 79.0
PSO210G4598 Papaver somniferum HOM05D005419 ORTHO05D007365 4.9e-136 488.0 293 78.2
MSTRG.26021 Avicennia marina HOM05D005419 ORTHO05D007365 6.5e-136 487.6 289 78.9
Cpa.g.sc187.13 Carica papaya HOM05D005419 ORTHO05D007365 6.5e-136 487.6 290 79.3
Actinidia14096 Actinidia chinensis HOM05D005419 ORTHO05D007365 8.4e-136 487.3 280 80.4
Potri.006G258200 Populus trichocarpa HOM05D005419 ORTHO05D007365 1.9e-135 486.1 292 79.5
HanXRQChr13g0387991 Helianthus annuus HOM05D005419 ORTHO05D007365 9.3e-135 483.8 290 78.6
Solyc08g029110.3 Solanum lycopersicum HOM05D005419 ORTHO05D007365 9.3e-135 483.8 290 79.3
Sopen08g010000 Solanum pennellii HOM05D005419 ORTHO05D007365 9.3e-135 483.8 290 79.3
AUR62031558 Chenopodium quinoa HOM05D005419 ORTHO05D007365 1.6e-134 483.0 289 78.9
Migut.A00016 Erythranthe guttata HOM05D005419 ORTHO05D007365 2.1e-134 482.6 292 78.4
Haze_21481 Corylus avellana HOM05D005419 ORTHO05D007365 2.7e-134 482.3 321 72.0
Sc09g0010330 Simmondsia chinensis HOM05D005419 ORTHO05D007365 2.7e-134 482.3 291 78.7
Os08g0299000 Oryza sativa ssp. japonica HOM05D005419 ORTHO05D007365 3.5e-134 481.9 291 76.6
Lalb_Chr23g0268401 Lupinus albus HOM05D005419 ORTHO05D007365 4.6e-134 481.5 290 78.3
FAN27G2423 Fragaria x ananassa HOM05D005419 ORTHO05D007365 6.0e-134 481.1 292 78.8
THA.LOC104815027 Tarenaya hassleriana HOM05D005419 ORTHO05D007365 5.1e-133 478.0 287 77.7
Lj8A726G39 Lonicera japonica HOM05D005419 ORTHO05D007365 1.9e-132 476.1 290 76.2
unitig_32.g10881 Utricularia gibba HOM05D005419 ORTHO05D007365 3.3e-132 475.3 290 75.5
Nitab4.5_0007718g0040 Nicotiana tabacum HOM05D005419 ORTHO05D007365 5.7e-132 474.6 292 77.7
Prupe.1G484800 Prunus persica HOM05D005419 ORTHO05D007365 1.6e-131 473.0 273 82.1
MBI15_g25765_MAGBIO Magnolia biondii HOM05D005419 ORTHO05D007365 3.7e-131 471.9 290 76.2
SGA_v2.0_scaffold20G09092 Striga asiatica HOM05D005419 ORTHO05D007365 2.4e-130 469.2 292 76.7
CANSAT54G2335 Cannabis sativa HOM05D005419 ORTHO05D007365 3.1e-130 468.8 289 75.8
Zm00001eb362830 Zea mays HOM05D005419 ORTHO05D007365 6.9e-130 467.6 289 77.2
HPP92_000481 Vanilla planifolia HOM05D005419 ORTHO05D007365 2.6e-129 465.7 289 74.4
CDE03G0272 Ceratophyllum demersum HOM05D005419 ORTHO05D007365 1.0e-128 463.8 294 73.8
vmacro05161 Vaccinium macrocarpon HOM05D005419 ORTHO05D007365 1.3e-128 463.4 271 80.1
FAN15G2739 Fragaria x ananassa HOM05D005419 ORTHO05D007365 1.7e-128 463.0 273 79.9
Sed0006243 Sechium edule HOM05D005419 ORTHO05D007365 2.9e-128 462.2 289 74.7
Lsat_1_v5_gn_5_157921 Lactuca sativa HOM05D005419 ORTHO05D007365 5.5e-127 458.0 290 75.9
Sabra18G0026400 Salix brachista HOM05D005419 ORTHO05D007365 7.2e-127 457.6 270 80.0
ClCG08G013470 Citrullus lanatus HOM05D005419 ORTHO05D007365 9.3e-127 457.2 313 72.5
Duzib168G1909 Durio zibethinus HOM05D005419 ORTHO05D007365 3.3e-124 448.7 292 73.6
Rhsim12G0212900 Rhododendron simsii HOM05D005419 ORTHO05D007365 1.3e-123 446.8 292 73.6
COL.COLO4_18897 Corchorus olitorius HOM05D005419 ORTHO05D007365 2.2e-123 446.0 251 81.3
ATR0767G069 Amborella trichopoda HOM05D005419 ORTHO05D007365 3.7e-123 445.3 271 76.4
Dinv18189 Davidia involucrata HOM05D005419 ORTHO05D007365 3.0e-117 425.6 292 70.9
Hund04483 Selenicereus undatus HOM05D005419 ORTHO05D007365 7.4e-116 421.0 310 66.1
MBI15_g36826_MAGBIO Magnolia biondii HOM05D005419 ORTHO05D007365 1.4e-114 416.8 271 73.8
Mapoly0065s0048 Marchantia polymorpha HOM05D005419 ORTHO05D007365 6.9e-114 414.5 283 66.8
Pp3c14_17280 Physcomitrium patens HOM05D005419 ORTHO05D007365 2.9e-112 409.1 288 65.3
SMO358G0334 Selaginella moellendorffii HOM05D005419 ORTHO05D007365 7.2e-111 404.4 286 65.4
Pp3c2_14390 Physcomitrium patens HOM05D005419 ORTHO05D007365 8.8e-109 397.5 273 67.8
SEGI_34683 Sequoiadendron giganteum HOM05D005419 ORTHO05D007365 3.3e-108 395.6 273 66.3
CBR_g59364 Chara braunii HOM05D005419 ORTHO05D007365 2.6e-105 386.0 281 63.7
SEGI_02513 Sequoiadendron giganteum HOM05D005419 ORTHO05D007365 4.8e-99 365.2 223 76.7
Rhsim07G0160700 Rhododendron simsii HOM05D005419 ORTHO05D007365 1.9e-87 326.6 306 56.2
Cre02.g096200 Chlamydomonas reinhardtii HOM05D005419 ORTHO05D007365 1.4e-85 320.5 285 51.2
Oeu012280.1 Olea europaea HOM05D005419 ORTHO05D007365 6.3e-83 311.6 190 77.4
THA.LOC104815144 Tarenaya hassleriana HOM05D005419 ORTHO05D007365 4.5e-81 305.4 194 75.3
CAN.G75.9 Capsicum annuum HOM05D005419 ORTHO05D007365 2.3e-80 303.1 183 78.7
PRCOL_00000176 Prasinoderma coloniale HOM05D005419 ORTHO05D007365 1.9e-79 300.1 294 51.7
Sabra06G0201900 Salix brachista HOM05D005419 ORTHO05D007365 2.0e-76 290.0 173 80.9
MCO07G667 Micromonas commoda HOM05D005419 ORTHO05D007365 2.2e-75 286.6 290 51.0
AagrBONN_evm.TU.Sc2ySwM_368.1912 Anthoceros agrestis HOM05D005419 ORTHO05D007365 5.9e-73 278.5 188 67.6
Haze_26290 Corylus avellana HOM05D005419 ORTHO05D007365 7.3e-71 271.6 293 46.4
Cfa026845 Carpinus fangiana HOM05D005419 ORTHO05D007365 1.2e-54 217.6 312 42.6
Lalb_Chr11g0063641 Lupinus albus HOM05D005419 ORTHO05D007365 1.8e-53 213.8 164 63.4
FAN09G2129 Fragaria x ananassa HOM05D005419 ORTHO05D019206 1.7e-51 207.2 224 50.4
FAN28G2535 Fragaria x ananassa HOM05D005419 ORTHO05D019206 9.2e-50 201.4 221 50.2
Oeu012278.1 Olea europaea HOM05D005419 ORTHO05D007365 8.4e-43 178.3 114 71.9
FAN01G2683 Fragaria x ananassa HOM05D005419 ORTHO05D019206 9.3e-42 174.9 101 81.2
FAN02G2313 Fragaria x ananassa HOM05D005419 ORTHO05D019206 2.1e-41 173.7 102 79.4
FAN21G3387 Fragaria x ananassa HOM05D005419 ORTHO05D019206 1.3e-38 164.5 97 79.4
Os05g0310750 Oryza sativa ssp. japonica HOM05D005419 ORTHO05D019206 3.4e-28 129.8 76 80.3
FAN05G2233 Fragaria x ananassa HOM05D004769 ORTHO05D005605 4.8e-22 109.4 164 39.0
FAN16G2296 Fragaria x ananassa HOM05D005419 ORTHO05D019206 9.0e-21 105.1 97 58.8
MBI12_g19406_MAGBIO Magnolia biondii HOM05D005419 ORTHO05D242193 3.2e-10 70.1 51 64.7
Prupe.1G567700 Prunus persica HOM05D005419 ORTHO05D019206 1.5e-07 61.2 40 77.5


User provided reference genes

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