Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL4G16560 Arabidopsis lyrata HOM05D001921 ORTHO05D001784 5.5e-61 237.7 138 100.0
AT2G25250 Arabidopsis thaliana HOM05D001921 ORTHO05D001784 4.4e-42 174.9 156 63.5
CARHR116380 Cardamine hirsuta HOM05D001921 ORTHO05D001784 4.4e-34 148.3 103 79.6
Thhalv10000356m.g Eutrema salsugineum HOM05D001921 ORTHO05D001784 1.6e-28 129.8 166 56.0
Sp4g04350 Schrenkiella parvula HOM05D001921 ORTHO05D001784 2.9e-25 119.0 102 65.7
Aa31sc859G10 Aethionema arabicum HOM05D001921 ORTHO05D001784 1.2e-23 113.6 101 63.4
Carub.0004s0487 Capsella rubella HOM05D001921 ORTHO05D001784 7.8e-23 110.9 79 77.2
BcaB08g35169 Brassica carinata HOM05D018780 ORTHO05D001784 1.1e-21 107.1 102 60.8
CARHR239920 Cardamine hirsuta HOM05D001921 ORTHO05D001784 2.5e-21 105.9 101 62.4
Sp7g29820 Schrenkiella parvula HOM05D001921 ORTHO05D001784 4.7e-20 101.7 102 59.8
C07p59050 Brassica napus HOM05D001921 ORTHO05D001784 8.0e-20 100.9 181 42.5
BraA03t15157Z Brassica rapa HOM05D001921 ORTHO05D001784 1.0e-19 100.5 179 42.5
A03p61190 Brassica napus HOM05D001921 ORTHO05D001784 1.4e-19 100.1 180 42.2
A09p55760 Brassica napus HOM05D018780 ORTHO05D001784 1.4e-19 100.1 100 58.0
BraA09t40976Z Brassica rapa HOM05D018780 ORTHO05D001784 1.4e-19 100.1 100 58.0
BcaC07g40877 Brassica carinata HOM05D018780 ORTHO05D001784 2.3e-19 99.4 102 60.8
BcaC07g40878 Brassica carinata HOM05D018780 ORTHO05D001784 2.3e-19 99.4 102 60.8
BolC7t46353H Brassica oleracea HOM05D001921 ORTHO05D001784 2.3e-19 99.4 102 57.8
AT4G32020 Arabidopsis thaliana HOM05D001921 ORTHO05D001784 4.0e-19 98.6 105 59.0
AL7G19870 Arabidopsis lyrata HOM05D001921 ORTHO05D001784 4.4e-18 95.1 96 59.4
THA.LOC104818602 Tarenaya hassleriana HOM05D001921 ORTHO05D001784 5.8e-18 94.7 99 55.6
Thhalv10026353m.g Eutrema salsugineum HOM05D001921 ORTHO05D001784 7.5e-18 94.4 102 59.8
Carub.0007s0853 Capsella rubella HOM05D001921 ORTHO05D001784 4.9e-17 91.7 78 65.4
A01p06280 Brassica napus HOM05D001921 ORTHO05D001784 3.2e-16 89.0 105 50.5
THA.LOC104803850 Tarenaya hassleriana HOM05D001921 ORTHO05D001784 3.2e-16 89.0 99 53.5
THA.LOC104804502 Tarenaya hassleriana HOM05D001921 ORTHO05D001784 4.1e-16 88.6 154 44.2
BolC1t00688H Brassica oleracea HOM05D001921 ORTHO05D001784 8.6e-14 80.9 111 45.9
C01p06910 Brassica napus HOM05D001921 ORTHO05D001784 5.6e-13 78.2 118 43.2
BcaNung03129 Brassica carinata HOM05D001921 ORTHO05D001784 9.5e-13 77.4 70 60.0
BcaC09g51990 Brassica carinata HOM05D001921 ORTHO05D001784 2.1e-12 76.3 70 57.1
BraA01t00594Z Brassica rapa HOM05D001921 ORTHO05D001784 2.1e-12 76.3 70 57.1
Duzib168G1630 Durio zibethinus HOM05D001921 ORTHO05D001784 1.4e-11 73.6 111 44.1
Ciclev10009542m.g Citrus clementina HOM05D001921 ORTHO05D001784 2.3e-11 72.8 114 41.2
Duzib187G0974 Durio zibethinus HOM05D001921 ORTHO05D001784 6.8e-11 71.2 111 43.2
Thecc.09G018900 Theobroma cacao HOM05D001921 ORTHO05D001784 1.2e-10 70.5 109 43.1
Aa31LG2G18040 Aethionema arabicum HOM05D001921 ORTHO05D001784 1.5e-10 70.1 100 48.0
Atru.chr7.2506 Acer truncatum HOM05D001921 ORTHO05D001784 5.8e-10 68.2 78 48.7
Gorai.010G117300 Gossypium raimondii HOM05D001921 ORTHO05D001784 7.5e-10 67.8 110 40.9
Gohir.D06G102300 Gossypium hirsutum HOM05D001921 ORTHO05D001784 9.8e-10 67.4 85 45.9
Gohir.A06G100200 Gossypium hirsutum HOM05D001921 ORTHO05D001784 1.7e-09 66.6 110 40.0
CiPaw.07G227300 Carya illinoinensis HOM05D001921 ORTHO05D001784 2.2e-09 66.2 97 45.4
Hma1.2p1_2976F.1_g331170 Hydrangea macrophylla HOM05D001921 ORTHO05D001784 2.2e-09 66.2 94 41.5
TWI32G1277 Tripterygium wilfordii HOM05D001921 ORTHO05D001784 2.2e-09 66.2 97 44.3
Hma1.2p1_0028F.1_g017215 Hydrangea macrophylla HOM05D001921 ORTHO05D001784 2.9e-09 65.9 94 41.5
Nitab4.5_0002992g0090 Nicotiana tabacum HOM05D001921 ORTHO05D001784 4.9e-09 65.1 102 40.2
Cfa013095 Carpinus fangiana HOM05D001921 ORTHO05D001784 1.4e-08 63.5 95 43.2
Nitab4.5_0009186g0010 Nicotiana tabacum HOM05D001921 ORTHO05D001784 1.4e-08 63.5 101 39.6
Cfa013096 Carpinus fangiana HOM05D001921 ORTHO05D001784 2.4e-08 62.8 95 43.2
COL.COLO4_18922 Corchorus olitorius HOM05D001921 ORTHO05D001784 3.2e-08 62.4 114 39.5
Dinv42904 Davidia involucrata HOM05D001921 ORTHO05D001784 5.4e-08 61.6 97 38.1
Dinv43197 Davidia involucrata HOM05D001921 ORTHO05D001784 5.4e-08 61.6 97 38.1
TWI63G0810 Tripterygium wilfordii HOM05D001921 ORTHO05D001784 5.4e-08 61.6 98 41.8
Gohir.A07G030700 Gossypium hirsutum HOM05D001921 ORTHO05D001784 1.6e-07 60.1 110 40.0
Dinv41418 Davidia involucrata HOM05D001921 ORTHO05D001784 2.1e-07 59.7 98 38.8
FAN23G0500 Fragaria x ananassa HOM05D001921 ORTHO05D001784 4.6e-07 58.5 68 45.6
FAN26G0252 Fragaria x ananassa HOM05D001921 ORTHO05D001784 4.6e-07 58.5 68 45.6
TAR383G0606 Trochodendron aralioides HOM05D001921 ORTHO05D001784 4.6e-07 58.5 70 47.1
Manes.16G126400 Manihot esculenta HOM05D001921 ORTHO05D001784 6.0e-07 58.2 107 38.3
Potri.006G260000 Populus trichocarpa HOM05D001921 ORTHO05D001784 6.0e-07 58.2 107 39.3
Gohir.D07G034600 Gossypium hirsutum HOM05D001921 ORTHO05D001784 7.8e-07 57.8 110 39.1
Gorai.001G036300 Gossypium raimondii HOM05D001921 ORTHO05D001784 7.8e-07 57.8 110 39.1
CSS0005509 Camellia sinensis var. sinensis HOM05D001921 ORTHO05D001784 1.0e-06 57.4 100 36.0
FvH4_1g01550 Fragaria vesca HOM05D001921 ORTHO05D001784 1.0e-06 57.4 98 35.7
FAN19G1379 Fragaria x ananassa HOM05D001921 ORTHO05D001784 1.0e-06 57.4 98 35.7
FAN28G2602 Fragaria x ananassa HOM05D001921 ORTHO05D001784 1.0e-06 57.4 98 35.7
Oeu012641.1 Olea europaea HOM05D001921 ORTHO05D001784 1.0e-06 57.4 75 45.3
RcHm_v2.0_Chr2g0086511 Rosa chinensis HOM05D001921 ORTHO05D001784 1.0e-06 57.4 68 44.1
Manes.06G040800 Manihot esculenta HOM05D001921 ORTHO05D001784 1.3e-06 57.0 68 41.2
CANSAT11G0699 Cannabis sativa HOM05D001921 ORTHO05D001784 1.7e-06 56.6 77 41.6
Sc23g0006510 Simmondsia chinensis HOM05D001921 ORTHO05D001784 1.7e-06 56.6 155 41.3
Lj4g0015946 Lotus japonicus HOM05D001921 ORTHO05D001784 2.3e-06 56.2 66 42.4
SabraUnG0005100 Salix brachista HOM05D001921 ORTHO05D001784 2.3e-06 56.2 106 37.7
Rhsim03G0253600 Rhododendron simsii HOM05D001921 ORTHO05D001784 3.0e-06 55.8 95 41.1
AUR62031574 Chenopodium quinoa HOM05D000017 ORTHO05D000013 3.9e-06 55.5 94 37.2
Haze_19306 Corylus avellana HOM05D001921 ORTHO05D001784 3.9e-06 55.5 65 46.2
DCAR_014829 Daucus carota HOM05D001921 ORTHO05D001784 3.9e-06 55.5 94 39.4
Nn2g12262 Nelumbo nucifera HOM05D001921 ORTHO05D001784 5.1e-06 55.1 96 36.5
PGSC0003DMG401013517 Solanum tuberosum HOM05D001921 ORTHO05D001784 5.1e-06 55.1 47 61.7
CiPaw.08G008000 Carya illinoinensis HOM05D001921 ORTHO05D001784 6.6e-06 54.7 102 41.2
Psat4g034000 Pisum sativum HOM05D001921 ORTHO05D001784 6.6e-06 54.7 87 40.2
Potri.008G198000 Populus trichocarpa HOM05D001921 ORTHO05D001784 6.6e-06 54.7 72 47.2
RcHm_v2.0_Chr6g0297171 Rosa chinensis HOM05D014836 ORTHO05D001784 6.6e-06 54.7 82 41.5
Sabra06G0203000 Salix brachista HOM05D001921 ORTHO05D001784 6.6e-06 54.7 106 36.8
Rhsim02G0206800 Rhododendron simsii HOM05D001921 ORTHO05D001784 8.6e-06 54.3 96 42.7
Sabra18G0025100 Salix brachista HOM05D001921 ORTHO05D001784 8.6e-06 54.3 72 38.9


User provided reference genes

Program Settings