Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL4G15940 Arabidopsis lyrata HOM05D001326 ORTHO05D004163 1.2e-54 216.5 121 100.0
AT5G43070 Arabidopsis thaliana HOM05D001326 ORTHO05D004163 2.3e-26 122.5 84 83.3
AL8G17650 Arabidopsis lyrata HOM05D001326 ORTHO05D004163 3.9e-26 121.7 73 93.2
AL47U10010 Arabidopsis lyrata HOM05D001326 ORTHO05D004163 1.1e-25 120.2 73 91.8
AL3G47660 Arabidopsis lyrata HOM05D001326 ORTHO05D004163 1.9e-20 102.8 75 81.3
Carub.0008s0565 Capsella rubella HOM05D001326 ORTHO05D004163 3.5e-19 98.6 74 78.4
CARHR180920 Cardamine hirsuta HOM05D001326 ORTHO05D004163 3.9e-18 95.1 66 80.3
AL1G53320 Arabidopsis lyrata HOM05D001326 ORTHO05D004163 1.8e-15 86.3 64 75.0
A08p05940 Brassica napus HOM05D001326 ORTHO05D004163 3.4e-14 82.0 80 63.8
A10p06640 Brassica napus HOM05D001326 ORTHO05D004163 3.4e-14 82.0 81 59.3
BraA08t32595Z Brassica rapa HOM05D001326 ORTHO05D004163 3.4e-14 82.0 80 63.8
BraA10t42922Z Brassica rapa HOM05D001326 ORTHO05D004163 3.4e-14 82.0 81 59.3
Thhalv10003281m.g Eutrema salsugineum HOM05D001326 ORTHO05D004163 4.4e-14 81.6 91 58.2
AT1G47200 Arabidopsis thaliana HOM05D001326 ORTHO05D004163 5.8e-14 81.3 66 69.7
Aa31LG5G18920 Aethionema arabicum HOM05D001326 ORTHO05D004163 7.5e-14 80.9 84 59.5
CARHR036740 Cardamine hirsuta HOM05D001326 ORTHO05D004163 7.5e-14 80.9 64 71.9
THA.LOC104820501 Tarenaya hassleriana HOM05D001326 ORTHO05D004163 7.5e-14 80.9 67 70.1
THA.LOC104814178 Tarenaya hassleriana HOM05D001326 ORTHO05D004163 1.7e-13 79.7 62 74.2
BcaC07g37236 Brassica carinata HOM05D001326 ORTHO05D004163 2.2e-13 79.3 67 68.7
C08p06600 Brassica napus HOM05D001326 ORTHO05D004163 2.2e-13 79.3 67 68.7
BolC8t47503H Brassica oleracea HOM05D001326 ORTHO05D004163 2.2e-13 79.3 67 68.7
Carub.0001s3596 Capsella rubella HOM05D001326 ORTHO05D004163 2.9e-13 79.0 63 73.0
BcaC08g42930 Brassica carinata HOM05D001326 ORTHO05D004163 3.7e-13 78.6 80 57.5
C06p01670 Brassica napus HOM05D001326 ORTHO05D004163 3.7e-13 78.6 80 57.5
BolC6t35298H Brassica oleracea HOM05D001326 ORTHO05D004163 3.7e-13 78.6 80 57.5
BcaB04g17546 Brassica carinata HOM05D001326 ORTHO05D004163 4.9e-13 78.2 63 71.4
BcaB07g33854 Brassica carinata HOM05D001326 ORTHO05D004163 4.9e-13 78.2 63 71.4
Thhalv10011812m.g Eutrema salsugineum HOM05D001326 ORTHO05D004163 4.9e-13 78.2 63 71.4
Duzib093G0342 Durio zibethinus HOM05D001326 ORTHO05D004163 6.4e-13 77.8 73 58.9
Thecc.08G095300 Theobroma cacao HOM05D001326 ORTHO05D004163 1.4e-12 76.6 70 60.0
Glyma.06G043700 Glycine max HOM05D001326 ORTHO05D004163 1.9e-12 76.3 95 48.4
Sp1g34320 Schrenkiella parvula HOM05D001326 ORTHO05D004163 1.9e-12 76.3 82 56.1
Gohir.A05G206500 Gossypium hirsutum HOM05D001326 ORTHO05D004163 3.2e-12 75.5 81 51.9
Atru.chr13.770 Acer truncatum HOM05D001326 ORTHO05D004163 4.1e-12 75.1 82 52.4
ClCG08G016240 Citrullus lanatus HOM05D001326 ORTHO05D004163 5.4e-12 74.7 68 61.8
Glyma.04G043200 Glycine max HOM05D001326 ORTHO05D004163 5.4e-12 74.7 86 51.2
Cpa.g.sc21.138 Carica papaya HOM05D001326 ORTHO05D004163 7.1e-12 74.3 80 53.8
Gohir.D05G210000 Gossypium hirsutum HOM05D001326 ORTHO05D004163 7.1e-12 74.3 81 50.6
Gorai.009G216400 Gossypium raimondii HOM05D001326 ORTHO05D004163 7.1e-12 74.3 81 50.6
Actinidia08267 Actinidia chinensis HOM05D001326 ORTHO05D004163 9.2e-12 73.9 80 52.5
Gorai.002G133200 Gossypium raimondii HOM05D001326 ORTHO05D004163 1.2e-11 73.6 78 55.1
Phvul.009G068700 Phaseolus vulgaris HOM05D001326 ORTHO05D004163 1.2e-11 73.6 73 56.2
COL.COLO4_28576 Corchorus olitorius HOM05D001326 ORTHO05D004163 1.6e-11 73.2 76 52.6
Duzib041G0056 Durio zibethinus HOM05D001326 ORTHO05D004163 2.1e-11 72.8 77 54.5
VMungo1309G2681 Vigna mungo HOM05D001326 ORTHO05D004163 2.1e-11 72.8 76 55.3
Gohir.D01G109000 Gossypium hirsutum HOM05D001326 ORTHO05D004163 2.7e-11 72.4 72 61.1
Lalb_Chr23g0267351 Lupinus albus HOM05D001326 ORTHO05D004163 2.7e-11 72.4 74 60.8
DCAR_008838 Daucus carota HOM05D001326 ORTHO05D004163 3.5e-11 72.0 83 56.6
Gohir.A01G121500 Gossypium hirsutum HOM05D001326 ORTHO05D004163 3.5e-11 72.0 78 52.6
Nitab4.5_0000569g0170 Nicotiana tabacum HOM05D001326 ORTHO05D004163 4.6e-11 71.6 69 56.5
Lj1g0010090 Lotus japonicus HOM05D001326 ORTHO05D004163 7.8e-11 70.9 77 49.4
Psat0s3164g0120 Pisum sativum HOM05D001326 ORTHO05D004163 7.8e-11 70.9 68 63.2
QL02p003371 Quercus lobata HOM05D001326 ORTHO05D004163 7.8e-11 70.9 66 57.6
Ca_15925_v3 Cicer arietinum L. HOM05D001326 ORTHO05D004163 1.0e-10 70.5 77 53.2
CsaV3_2G026380 Cucumis sativus L. HOM05D001326 ORTHO05D004163 1.0e-10 70.5 68 60.3
Peaxi162Scf00219g00123 Petunia axillaris HOM05D001326 ORTHO05D004163 1.0e-10 70.5 82 48.8
TAR625G0613 Trochodendron aralioides HOM05D001326 ORTHO05D004163 1.0e-10 70.5 80 51.2
CANSAT25G2642 Cannabis sativa HOM05D001326 ORTHO05D004163 1.3e-10 70.1 74 54.1
Oeu036969.1 Olea europaea HOM05D001326 ORTHO05D004163 1.3e-10 70.1 68 55.9
SGA_v2.0_scaffold14G06954 Striga asiatica HOM05D001326 ORTHO05D004163 1.3e-10 70.1 80 55.0
Lalb_Chr14g0368421 Lupinus albus HOM05D001326 ORTHO05D004163 2.3e-10 69.3 67 58.2
Nitab4.5_0011741g0010 Nicotiana tabacum HOM05D001326 ORTHO05D004163 2.3e-10 69.3 63 58.7
Nitab4.5_0003035g0010 Nicotiana tabacum HOM05D001326 ORTHO05D004163 3.0e-10 68.9 63 58.7
Oeu016580.1 Olea europaea HOM05D001326 ORTHO05D004163 3.0e-10 68.9 68 54.4
SalBow6G1031 Salvia bowleyana HOM05D001326 ORTHO05D004163 3.0e-10 68.9 70 57.1
Sed0004426 Sechium edule HOM05D001326 ORTHO05D004163 3.0e-10 68.9 73 53.4
SGA_v2.0_scaffold28G11812 Striga asiatica HOM05D001326 ORTHO05D004163 3.0e-10 68.9 69 58.0
MSTRG.22238 Avicennia marina HOM05D001326 ORTHO05D004163 5.1e-10 68.2 71 56.3
Prupe.1G429000 Prunus persica HOM05D001326 ORTHO05D004163 5.1e-10 68.2 67 56.7
vmacro23170 Vaccinium macrocarpon HOM05D001326 ORTHO05D004163 5.1e-10 68.2 85 51.8
Lalb_Chr22g0354841 Lupinus albus HOM05D001326 ORTHO05D004163 6.6e-10 67.8 80 50.0
Nitab4.5_0004888g0020 Nicotiana tabacum HOM05D001326 ORTHO05D004163 6.6e-10 67.8 69 53.6
Ah.05g167240 Amaranthus hybridus HOM05D001326 ORTHO05D004163 8.6e-10 67.4 88 50.0
CAN.G107.48 Capsicum annuum HOM05D001326 ORTHO05D004163 8.6e-10 67.4 81 49.4
Potri.002G122000 Populus trichocarpa HOM05D001326 ORTHO05D004163 8.6e-10 67.4 81 44.4
Cc10_g05200 Coffea canephora HOM05D001326 ORTHO05D004163 1.1e-09 67.0 67 55.2
Medtr1g018710 Medicago truncatula HOM05D001326 ORTHO05D004163 1.1e-09 67.0 66 53.0
TWI36G1533 Tripterygium wilfordii HOM05D001326 ORTHO05D004163 1.1e-09 67.0 62 61.3
CSS0008374 Camellia sinensis var. sinensis HOM05D001326 ORTHO05D004163 1.5e-09 66.6 69 52.2
Nn1g04667 Nelumbo nucifera HOM05D001326 ORTHO05D004163 1.5e-09 66.6 73 53.4
MELO3C010830.2 Cucumis melo HOM05D001326 ORTHO05D004163 1.9e-09 66.2 68 57.4
Manes.18G042600 Manihot esculenta HOM05D001326 ORTHO05D004163 1.9e-09 66.2 62 56.5
Actinidia38087 Actinidia chinensis HOM05D001326 ORTHO05D004163 2.5e-09 65.9 79 50.6
Ciclev10002480m.g Citrus clementina HOM05D001326 ORTHO05D004163 2.5e-09 65.9 67 50.7
Lj5g0001031 Lotus japonicus HOM05D001326 ORTHO05D004163 2.5e-09 65.9 91 45.1
Sopen04g031970 Solanum pennellii HOM05D001326 ORTHO05D004163 2.5e-09 65.9 82 50.0
TAR381G1295 Trochodendron aralioides HOM05D001326 ORTHO05D004163 2.5e-09 65.9 71 54.9
Haze_18087 Corylus avellana HOM05D001326 ORTHO05D004163 3.3e-09 65.5 60 60.0
Migut.O00599 Erythranthe guttata HOM05D001326 ORTHO05D004163 3.3e-09 65.5 70 52.9
MELO3C016792.2 Cucumis melo HOM05D001326 ORTHO05D004163 4.3e-09 65.1 76 51.3
CsaV3_4G034780 Cucumis sativus L. HOM05D001326 ORTHO05D004163 4.3e-09 65.1 76 51.3
Sp2g07850 Schrenkiella parvula HOM05D001326 ORTHO05D004163 4.3e-09 65.1 56 66.1
PGSC0003DMG400003309 Solanum tuberosum HOM05D001326 ORTHO05D004163 4.3e-09 65.1 67 55.2
MSTRG.25063 Avicennia marina HOM05D001326 ORTHO05D004163 5.6e-09 64.7 63 57.1
CAN.G1621.9 Capsicum annuum HOM05D001326 ORTHO05D004163 5.6e-09 64.7 67 53.7
MD15G1075600 Malus domestica HOM05D001326 ORTHO05D004163 5.6e-09 64.7 81 46.9
Rhsim06G0057100 Rhododendron simsii HOM05D001326 ORTHO05D004163 5.6e-09 64.7 74 50.0
Aqoxy5G01135 Aquilegia oxysepala HOM05D001326 ORTHO05D004163 7.3e-09 64.3 69 50.7
CDE04G2550 Ceratophyllum demersum HOM05D001326 ORTHO05D004163 7.3e-09 64.3 65 53.8
ClCG05G020300 Citrullus lanatus HOM05D001326 ORTHO05D004163 7.3e-09 64.3 76 51.3
Glyma.17G237500 Glycine max HOM05D001326 ORTHO05D004163 7.3e-09 64.3 77 53.2
Nn5g30440 Nelumbo nucifera HOM05D001326 ORTHO05D004163 7.3e-09 64.3 94 43.6
HPP92_007849 Vanilla planifolia HOM05D001326 ORTHO05D004163 7.3e-09 64.3 87 46.0
Ca_13253_v3 Cicer arietinum L. HOM05D001326 ORTHO05D004163 9.5e-09 63.9 66 51.5
Medtr3g102500 Medicago truncatula HOM05D001326 ORTHO05D004163 9.5e-09 63.9 68 55.9
Solyc04g078380.3 Solanum lycopersicum HOM05D001326 ORTHO05D004163 9.5e-09 63.9 67 53.7
CiPaw.15G049900 Carya illinoinensis HOM05D001326 ORTHO05D004163 1.2e-08 63.5 60 56.7
Sabra14G0014500 Salix brachista HOM05D001326 ORTHO05D004163 1.2e-08 63.5 62 54.8
Psat6g014240 Pisum sativum HOM05D001326 ORTHO05D004163 1.6e-08 63.2 66 53.0
Potri.014G021900 Populus trichocarpa HOM05D001326 ORTHO05D004163 1.6e-08 63.2 63 54.0
Sabra02G0095900 Salix brachista HOM05D001326 ORTHO05D004163 1.6e-08 63.2 75 48.0
HPP92_004637 Vanilla planifolia HOM05D001326 ORTHO05D004163 2.1e-08 62.8 92 45.7
CiPaw.16G035200 Carya illinoinensis HOM05D001326 ORTHO05D004163 2.8e-08 62.4 67 49.3
Glyma.14G086900 Glycine max HOM05D001326 ORTHO05D004163 2.8e-08 62.4 70 55.7
Migut.N02754 Erythranthe guttata HOM05D001326 ORTHO05D004163 3.6e-08 62.0 70 51.4
AUR62044632 Chenopodium quinoa HOM05D001326 ORTHO05D004163 4.7e-08 61.6 77 53.2
Gohir.D05G264900 Gossypium hirsutum HOM05D001326 ORTHO05D004163 4.7e-08 61.6 73 52.1
Cfa018037 Carpinus fangiana HOM05D001326 ORTHO05D004163 6.2e-08 61.2 62 54.8
Gorai.009G276700 Gossypium raimondii HOM05D001326 ORTHO05D004163 6.2e-08 61.2 73 50.7
Phvul.001G025400 Phaseolus vulgaris HOM05D001326 ORTHO05D004163 8.1e-08 60.8 76 47.4
VMungo0647G1866 Vigna mungo HOM05D001326 ORTHO05D004163 1.1e-07 60.5 77 48.1
EL10As7g23801 Beta vulgaris HOM05D001326 ORTHO05D004163 1.4e-07 60.1 89 47.2
Dinv39258 Davidia involucrata HOM05D001326 ORTHO05D004163 1.4e-07 60.1 70 50.0
Sc15g0005810 Simmondsia chinensis HOM05D001326 ORTHO05D004163 1.8e-07 59.7 70 51.4
TPR.G25586 Trifolium pratense HOM05D001326 ORTHO05D004163 1.8e-07 59.7 83 48.2
AUR62044370 Chenopodium quinoa HOM05D001326 ORTHO05D004163 3.1e-07 58.9 92 45.7
MD08G1091600 Malus domestica HOM05D001326 ORTHO05D004163 3.1e-07 58.9 66 48.5
Sed0018271 Sechium edule HOM05D001326 ORTHO05D004163 4.0e-07 58.5 62 54.8
Sed0026094 Sechium edule HOM05D001326 ORTHO05D004163 4.0e-07 58.5 64 51.6
Sc15g0005510 Simmondsia chinensis HOM05D001326 ORTHO05D004163 4.0e-07 58.5 78 50.0
Dinv35915 Davidia involucrata HOM05D000232 ORTHO05D004163 5.2e-07 58.2 69 50.7
Lsat_1_v5_gn_6_109441 Lactuca sativa HOM05D001326 ORTHO05D004163 5.2e-07 58.2 78 47.4
Aqoxy6G02840 Aquilegia oxysepala HOM05D001326 ORTHO05D004163 1.2e-06 57.0 76 51.3
Hma1.2p1_0634F.1_g192950 Hydrangea macrophylla HOM05D001326 ORTHO05D004163 1.2e-06 57.0 63 50.8
TWI09G1274 Tripterygium wilfordii HOM05D001326 ORTHO05D004163 1.5e-06 56.6 68 50.0
PGR031G2476 Punica granatum HOM05D001326 ORTHO05D004163 4.4e-06 55.1 69 47.8
unitig_26.g9808 Utricularia gibba HOM05D001326 ORTHO05D004163 4.4e-06 55.1 83 47.0
HPP92_023698 Vanilla planifolia HOM05D001326 ORTHO05D004163 4.4e-06 55.1 81 49.4
Eucgr.F00159 Eucalyptus grandis HOM05D001326 ORTHO05D004163 9.9e-06 53.9 73 46.6


User provided reference genes

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