Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL4G15870 Arabidopsis lyrata HOM05D007019 ORTHO05D008398 1.1e-255 886.3 496 100.0
AT2G24830 Arabidopsis thaliana HOM05D007019 ORTHO05D008398 3.0e-226 788.5 500 86.0
CARHR294580 Cardamine hirsuta HOM05D007019 ORTHO05D008398 7.9e-211 737.3 506 79.2
Carub.0004s0445 Capsella rubella HOM05D007019 ORTHO05D008398 4.5e-206 721.5 503 77.7
Thhalv10000137m.g Eutrema salsugineum HOM05D007019 ORTHO05D008398 6.1e-203 711.1 506 79.1
Sp4g03850 Schrenkiella parvula HOM05D007019 ORTHO05D008398 9.1e-199 697.2 506 76.3
Aa31LG7G11570 Aethionema arabicum HOM05D007019 ORTHO05D008398 2.0e-190 669.5 511 76.3
A09p56030 Brassica napus HOM05D007019 ORTHO05D008398 2.4e-183 646.0 500 72.6
C08p39020 Brassica napus HOM05D007019 ORTHO05D008398 5.4e-183 644.8 503 74.0
BolC8t51475H Brassica oleracea HOM05D007019 ORTHO05D008398 5.4e-183 644.8 503 74.0
BraA09t41004Z Brassica rapa HOM05D007019 ORTHO05D008398 5.9e-182 641.3 509 70.9
A09p56090 Brassica napus HOM05D007019 ORTHO05D008398 5.0e-181 638.3 508 71.5
BcaC07g40903 Brassica carinata HOM05D007019 ORTHO05D008398 5.8e-169 598.2 498 70.9
THA.LOC104819948 Tarenaya hassleriana HOM05D007019 ORTHO05D008398 1.2e-158 563.9 518 65.6
Cfa013011 Carpinus fangiana HOM05D007019 ORTHO05D008398 1.9e-151 540.0 511 61.1
COL.COLO4_18972 Corchorus olitorius HOM05D007019 ORTHO05D008398 3.9e-149 532.3 515 62.5
Duzib168G1437 Durio zibethinus HOM05D007019 ORTHO05D008398 3.9e-149 532.3 515 59.4
Gorai.009G064200 Gossypium raimondii HOM05D007019 ORTHO05D008398 3.9e-149 532.3 513 60.8
Thecc.09G013400 Theobroma cacao HOM05D007019 ORTHO05D008398 5.1e-149 531.9 514 60.1
Manes.16G132200 Manihot esculenta HOM05D007019 ORTHO05D008398 6.6e-149 531.6 509 58.3
QL02p018053 Quercus lobata HOM05D007019 ORTHO05D008398 2.1e-147 526.6 509 62.3
CiPaw.07G232900 Carya illinoinensis HOM05D007019 ORTHO05D008398 8.1e-147 524.6 510 57.3
Gohir.A05G061000 Gossypium hirsutum HOM05D007019 ORTHO05D008398 1.8e-146 523.5 513 62.4
Gohir.D05G063200 Gossypium hirsutum HOM05D007019 ORTHO05D008398 1.2e-145 520.8 513 61.4
arahy.Tifrunner.gnm1.ann1.SS16UG Arachis hypogaea HOM05D007019 ORTHO05D008398 7.6e-145 518.1 507 56.6
Ciclev10008089m.g Citrus clementina HOM05D007019 ORTHO05D008398 1.3e-144 517.3 510 58.2
Potri.018G016200 Populus trichocarpa HOM05D007019 ORTHO05D008398 2.2e-144 516.5 506 56.5
Oeu021907.1 Olea europaea HOM05D007019 ORTHO05D008398 4.9e-144 515.4 506 60.3
Prupe.1G396900 Prunus persica HOM05D007019 ORTHO05D008398 8.4e-144 514.6 517 56.5
arahy.Tifrunner.gnm1.ann1.MG10WM Arachis hypogaea HOM05D007019 ORTHO05D008398 5.4e-143 511.9 508 56.7
MELO3C011312.2 Cucumis melo HOM05D007019 ORTHO05D008398 9.3e-143 511.1 513 60.0
Actinidia14141 Actinidia chinensis HOM05D007019 ORTHO05D008398 2.1e-142 510.0 510 57.5
Lj6g0025581 Lotus japonicus HOM05D007019 ORTHO05D008398 4.6e-142 508.8 509 56.4
FvH4_2g41350 Fragaria vesca HOM05D007019 ORTHO05D008398 6.0e-142 508.4 506 55.3
Atru.chr7.2574 Acer truncatum HOM05D007019 ORTHO05D008398 3.0e-141 506.1 506 57.5
ClCG08G013800 Citrullus lanatus HOM05D007019 ORTHO05D008398 3.9e-141 505.8 511 60.7
Lj7A737G40 Lonicera japonica HOM05D007019 ORTHO05D008398 1.5e-140 503.8 521 54.3
Eucgr.C04032 Eucalyptus grandis HOM05D007019 ORTHO05D008398 2.5e-140 503.1 506 56.1
CsaV3_2G032590 Cucumis sativus L. HOM05D007019 ORTHO05D008398 5.6e-140 501.9 511 59.5
Hma1.2p1_0737F.1_g210790 Hydrangea macrophylla HOM05D007019 ORTHO05D008398 2.8e-139 499.6 517 56.5
Glyma.18G091000 Glycine max HOM05D007019 ORTHO05D008398 3.6e-139 499.2 511 56.2
VMungo0540G1233 Vigna mungo HOM05D007019 ORTHO05D008398 3.6e-139 499.2 511 60.7
Cc00_g05220 Coffea canephora HOM05D007019 ORTHO05D008398 6.2e-139 498.4 506 56.7
PGR044G2245 Punica granatum HOM05D007019 ORTHO05D008398 6.2e-139 498.4 510 54.3
MSTRG.1627 Avicennia marina HOM05D007019 ORTHO05D008398 1.8e-138 496.9 507 59.2
TWI32G0429 Tripterygium wilfordii HOM05D007019 ORTHO05D008398 5.3e-138 495.4 509 54.4
Sed0002524 Sechium edule HOM05D007019 ORTHO05D008398 6.9e-138 495.0 517 58.2
Phvul.006G047900 Phaseolus vulgaris HOM05D007019 ORTHO05D008398 1.2e-137 494.2 511 58.7
Glyma.08G321000 Glycine max HOM05D007019 ORTHO05D008398 3.4e-137 492.7 510 56.5
RcHm_v2.0_Chr6g0299181 Rosa chinensis HOM05D007019 ORTHO05D008398 3.4e-137 492.7 510 54.9
PGSC0003DMG400014784 Solanum tuberosum HOM05D007019 ORTHO05D008398 4.5e-137 492.3 509 56.6
CSS0016918 Camellia sinensis var. sinensis HOM05D007019 ORTHO05D008398 5.8e-137 491.9 508 56.3
CSS0023374 Camellia sinensis var. sinensis HOM05D007019 ORTHO05D008398 5.8e-137 491.9 508 56.3
Ca_26389_v3 Cicer arietinum L. HOM05D007019 ORTHO05D008398 1.3e-136 490.7 509 60.3
CANSAT25G0065 Cannabis sativa HOM05D007019 ORTHO05D008398 2.2e-136 490.0 510 54.7
PSO731G0070 Papaver somniferum HOM05D007019 ORTHO05D008398 2.2e-136 490.0 509 52.7
DCAR_003030 Daucus carota HOM05D007019 ORTHO05D008398 4.9e-136 488.8 507 53.5
Nn6g33490 Nelumbo nucifera HOM05D007019 ORTHO05D008398 1.1e-135 487.6 524 55.5
FAN27G2994 Fragaria x ananassa HOM05D007019 ORTHO05D008398 3.2e-135 486.1 493 54.6
unitig_46.g18223 Utricularia gibba HOM05D007019 ORTHO05D008398 3.2e-135 486.1 504 53.8
Rhsim02G0217600 Rhododendron simsii HOM05D007019 ORTHO05D008398 5.4e-135 485.3 505 54.5
ECA240G4302 Erigeron canadensis HOM05D007019 ORTHO05D008398 9.3e-135 484.6 526 56.1
Psat5g174160 Pisum sativum HOM05D007019 ORTHO05D008398 2.7e-134 483.0 510 53.3
MBI14_g16432_MAGBIO Magnolia biondii HOM05D007019 ORTHO05D008398 3.5e-134 482.6 509 54.4
PSO210G0129 Papaver somniferum HOM05D007019 ORTHO05D008398 7.9e-134 481.5 509 51.7
Lalb_Chr15g0081591 Lupinus albus HOM05D007019 ORTHO05D008398 1.3e-133 480.7 510 53.5
Sc23g0006120 Simmondsia chinensis HOM05D007019 ORTHO05D008398 6.7e-133 478.4 526 58.2
Migut.E01445 Erythranthe guttata HOM05D007019 ORTHO05D008398 4.3e-132 475.7 506 54.2
TPR.G32253 Trifolium pratense HOM05D007019 ORTHO05D008398 2.1e-131 473.4 511 54.4
CAN.G273.24 Capsicum annuum HOM05D007019 ORTHO05D008398 3.6e-131 472.6 511 57.1
Hund25606 Selenicereus undatus HOM05D007019 ORTHO05D008398 3.6e-131 472.6 528 54.0
Medtr3g053700 Medicago truncatula HOM05D007019 ORTHO05D008398 4.8e-131 472.2 510 52.9
CDE04G0815 Ceratophyllum demersum HOM05D007019 ORTHO05D008398 8.1e-131 471.5 511 53.0
Cpa.g.sc148.46 Carica papaya HOM05D007019 ORTHO05D008398 2.4e-130 469.9 507 57.2
HanXRQChr03g0084841 Helianthus annuus HOM05D007019 ORTHO05D008398 3.4e-129 466.1 527 50.1
Sabra18G0019700 Salix brachista HOM05D007019 ORTHO05D008398 9.9e-129 464.5 535 51.0
Aqoxy7G03288 Aquilegia oxysepala HOM05D007019 ORTHO05D008398 1.3e-128 464.2 513 53.4
EL10Ac2g02454 Beta vulgaris HOM05D007019 ORTHO05D008398 1.7e-128 463.8 556 49.6
Solyc08g068820.3 Solanum lycopersicum HOM05D007019 ORTHO05D008398 1.7e-128 463.8 510 52.2
Lsat_1_v5_gn_6_78060 Lactuca sativa HOM05D007019 ORTHO05D008398 1.9e-127 460.3 509 50.7
HPP92_010745 Vanilla planifolia HOM05D007019 ORTHO05D008398 5.5e-127 458.8 511 56.0
SGA_v2.0_scaffold169G38600 Striga asiatica HOM05D007019 ORTHO05D008398 2.7e-126 456.4 507 53.5
ATR0580G102 Amborella trichopoda HOM05D007019 ORTHO05D008398 1.3e-125 454.1 517 50.3
FAN15G0718 Fragaria x ananassa HOM05D007019 ORTHO05D008398 4.8e-123 445.7 520 50.2
Zm00001eb257650 Zea mays HOM05D007019 ORTHO05D008398 9.0e-122 441.4 520 50.2
AUR62032443 Chenopodium quinoa HOM05D007019 ORTHO05D008398 2.5e-119 433.3 530 47.4
TAR636G0280 Trochodendron aralioides HOM05D007019 ORTHO05D008398 1.6e-118 430.6 361 60.9
AUR62024776 Chenopodium quinoa HOM05D007019 ORTHO05D008398 3.9e-117 426.0 548 48.2
Nitab4.5_0000406g0110 Nicotiana tabacum HOM05D007019 ORTHO05D008398 5.7e-116 422.2 508 51.8
Sopen08g022560 Solanum pennellii HOM05D007019 ORTHO05D008398 6.5e-112 408.7 416 53.6
Nitab4.5_0012106g0030 Nicotiana tabacum HOM05D007019 ORTHO05D008398 6.7e-109 398.7 505 49.9
SEGI_04420 Sequoiadendron giganteum HOM05D007019 ORTHO05D008398 5.7e-108 395.6 522 50.4
Dinv03401 Davidia involucrata HOM05D007019 ORTHO05D008398 5.7e-100 369.0 376 60.6
vmacro11274 Vaccinium macrocarpon HOM05D007019 ORTHO05D008398 2.2e-99 367.1 502 47.4
MD08G1051900 Malus domestica HOM05D007019 ORTHO05D008398 3.2e-95 353.2 372 57.5
Pp3c21_5730 Physcomitrium patens HOM05D007019 ORTHO05D008398 2.6e-92 343.6 529 40.5
SMO116G0382 Selaginella moellendorffii HOM05D007019 ORTHO05D008398 4.8e-91 339.3 499 42.9
Mapoly0067s0020 Marchantia polymorpha HOM05D007019 ORTHO05D008398 7.0e-90 335.5 523 39.4
Hma1.2p1_0737F.1_g210800 Hydrangea macrophylla HOM05D007019 ORTHO05D008398 4.1e-82 309.7 344 55.2
SHI21092 Sapria himalayana HOM05D007019 ORTHO05D008398 2.2e-75 287.3 592 35.6
Dinv10229 Davidia involucrata HOM05D007019 ORTHO05D008398 8.3e-67 258.8 366 49.7
GSVIVG01036005001 Vitis vinifera HOM05D007019 ORTHO05D008398 1.2e-57 228.4 189 61.9
AagrBONN_evm.TU.Sc2ySwM_117.1463 Anthoceros agrestis HOM05D007019 ORTHO05D008398 4.0e-53 213.4 373 42.9
CBR_g30106 Chara braunii HOM05D007019 ORTHO05D008398 5.0e-48 196.4 564 31.4
SalBow6G1623 Salvia bowleyana HOM05D007019 ORTHO05D008398 1.6e-33 148.3 156 51.3
Peaxi162Scf01419g00115 Petunia axillaris HOM05D007019 ORTHO05D008398 1.8e-29 134.8 146 52.1
Os02g0793000 Oryza sativa ssp. japonica HOM05D007019 ORTHO05D008398 6.2e-22 109.8 108 52.8
SMO116G0105 Selaginella moellendorffii HOM05D007019 ORTHO05D008398 4.0e-21 107.1 306 31.7
AagrBONN_evm.TU.Sc2ySwM_117.1462 Anthoceros agrestis HOM05D007019 ORTHO05D008398 3.8e-19 100.5 152 42.8
SMO269G0003 Selaginella moellendorffii HOM05D007019 ORTHO05D008398 9.3e-10 69.3 313 26.2
CSS0028433 Camellia sinensis var. sinensis HOM05D004574 ORTHO05D005612 3.9e-08 63.9 52 57.7
Actinidia21909 Actinidia chinensis HOM05D004574 ORTHO05D005612 4.3e-07 60.5 62 45.2
DCAR_017762 Daucus carota HOM05D004574 ORTHO05D005612 9.6e-07 59.3 74 41.9
Lsat_1_v5_gn_5_90461 Lactuca sativa HOM05D004574 ORTHO05D005612 9.6e-07 59.3 49 57.1
Lj9A709T23 Lonicera japonica HOM05D004574 ORTHO05D005612 1.6e-06 58.5 55 49.1
Sabra06G0145700 Salix brachista HOM05D004574 ORTHO05D005612 1.6e-06 58.5 71 45.1
Sabra18G0096500 Salix brachista HOM05D004574 ORTHO05D005612 1.6e-06 58.5 87 39.1
Nn2g12259 Nelumbo nucifera HOM05D004574 ORTHO05D005612 2.1e-06 58.2 69 43.5
TWI34G0786 Tripterygium wilfordii HOM05D004574 ORTHO05D005612 2.8e-06 57.8 46 58.7
Actinidia04251 Actinidia chinensis HOM05D004574 ORTHO05D005612 4.8e-06 57.0 49 53.1
CANSAT11G2415 Cannabis sativa HOM05D004574 ORTHO05D005612 4.8e-06 57.0 70 44.3
Ciclev10007567m.g Citrus clementina HOM05D004574 ORTHO05D005612 4.8e-06 57.0 46 58.7
Nitab4.5_0001151g0100 Nicotiana tabacum HOM05D004574 ORTHO05D005612 4.8e-06 57.0 71 40.8
Nitab4.5_0001671g0130 Nicotiana tabacum HOM05D004574 ORTHO05D005612 4.8e-06 57.0 95 38.9
Cfa020884 Carpinus fangiana HOM05D004574 ORTHO05D005612 6.2e-06 56.6 66 42.4
Haze_19313 Corylus avellana HOM05D004574 ORTHO05D005612 6.2e-06 56.6 56 46.4
ECA234G1322 Erigeron canadensis HOM05D004574 ORTHO05D005612 6.2e-06 56.6 49 53.1
Glyma.13G156900 Glycine max HOM05D004574 ORTHO05D005612 6.2e-06 56.6 73 45.2
Glyma.17G104500 Glycine max HOM05D004574 ORTHO05D005612 6.2e-06 56.6 73 46.6
CiPaw.16G117400 Carya illinoinensis HOM05D004574 ORTHO05D005612 8.2e-06 56.2 46 56.5
Cc06_g07390 Coffea canephora HOM05D004574 ORTHO05D005612 8.2e-06 56.2 52 48.1
DCAR_014931 Daucus carota HOM05D004574 ORTHO05D005612 8.2e-06 56.2 49 53.1
HanXRQChr12g0357011 Helianthus annuus HOM05D004574 ORTHO05D005612 8.2e-06 56.2 57 47.4
MD02G1012700 Malus domestica HOM05D004574 ORTHO05D005612 8.2e-06 56.2 55 49.1
Prupe.7G253700 Prunus persica HOM05D004574 ORTHO05D005612 8.2e-06 56.2 46 56.5
VMungo1215G1939 Vigna mungo HOM05D004574 ORTHO05D005612 8.2e-06 56.2 89 38.2


User provided reference genes

Program Settings