Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL4G15560 Arabidopsis lyrata HOM05D003869 ORTHO05D004718 9.8e-146 520.0 243 100.0
AL4G15660 Arabidopsis lyrata HOM05D003869 ORTHO05D004718 3.3e-77 292.4 157 89.2
AL4G18510 Arabidopsis lyrata HOM05D003869 ORTHO05D004718 1.2e-74 283.9 155 85.8
Carub.0004s0426 Capsella rubella HOM05D003869 ORTHO05D004718 1.5e-66 256.9 155 77.4
AL4G15555 Arabidopsis lyrata HOM05D003869 ORTHO05D004718 1.5e-61 240.4 243 55.6
BcaB06g28007 Brassica carinata HOM05D003869 ORTHO05D004718 1.4e-51 207.2 158 60.8
Carub.0004s0353 Capsella rubella HOM05D003869 ORTHO05D004718 1.8e-51 206.8 150 66.0
AL4G15620 Arabidopsis lyrata HOM05D003869 ORTHO05D004718 7.0e-51 204.9 154 67.5
AL4G18540 Arabidopsis lyrata HOM05D003869 ORTHO05D004718 4.5e-50 202.2 176 58.0
A04p19140 Brassica napus HOM05D003869 ORTHO05D004718 1.5e-48 197.2 154 64.9
BraA04t17514Z Brassica rapa HOM05D003869 ORTHO05D004718 1.5e-48 197.2 154 64.9
Thhalv10000166m.g Eutrema salsugineum HOM05D003869 ORTHO05D004718 1.5e-48 197.2 154 64.3
AT1G64840 Arabidopsis thaliana HOM05D003869 ORTHO05D004718 4.2e-48 195.7 153 62.7
A04p19130 Brassica napus HOM05D003869 ORTHO05D004718 4.2e-48 195.7 154 64.3
Carub.0004s0427 Capsella rubella HOM05D003869 ORTHO05D004718 7.2e-48 194.9 152 65.1
BcaC02g08414 Brassica carinata HOM05D003869 ORTHO05D004718 1.2e-47 194.1 151 64.9
BolC4t26995H Brassica oleracea HOM05D003869 ORTHO05D004718 1.2e-47 194.1 151 64.9
Carub.0004s0429 Capsella rubella HOM05D003869 ORTHO05D004718 6.1e-47 191.8 152 63.8
C04p54520 Brassica napus HOM05D003869 ORTHO05D004718 1.0e-46 191.0 151 64.2
Carub.0004s0433 Capsella rubella HOM05D003869 ORTHO05D004718 1.1e-45 187.6 159 59.7
AL4G18480 Arabidopsis lyrata HOM05D003869 ORTHO05D004718 2.6e-45 186.4 153 60.8
CARHR116870 Cardamine hirsuta HOM05D003869 ORTHO05D004718 2.6e-45 186.4 151 60.9
BraA04t17513Z Brassica rapa HOM05D003869 ORTHO05D004718 4.4e-45 185.7 154 62.3
AL4G15500 Arabidopsis lyrata HOM05D003869 ORTHO05D004718 5.7e-45 185.3 152 60.5
AL4G14510 Arabidopsis lyrata HOM05D003869 ORTHO05D004718 1.3e-44 184.1 151 61.6
AL4G14540 Arabidopsis lyrata HOM05D003869 ORTHO05D004718 4.8e-44 182.2 149 62.4
AL4G18500 Arabidopsis lyrata HOM05D003869 ORTHO05D004718 4.8e-44 182.2 181 54.7
AL4G19670 Arabidopsis lyrata HOM05D000888 ORTHO05D000740 4.8e-44 182.2 153 60.1
Carub.0004s0432 Capsella rubella HOM05D003869 ORTHO05D004718 4.8e-44 182.2 170 55.3
Carub.0004s0352 Capsella rubella HOM05D003869 ORTHO05D004718 8.2e-44 181.4 150 62.0
Carub.0004s0422 Capsella rubella HOM05D003869 ORTHO05D004718 1.4e-43 180.6 151 60.9
AT2G24255 Arabidopsis thaliana HOM05D003869 ORTHO05D004718 4.1e-43 179.1 177 54.8
AL4G18560 Arabidopsis lyrata HOM05D003869 ORTHO05D004718 5.3e-43 178.7 151 58.9
Carub.0004s0423 Capsella rubella HOM05D003869 ORTHO05D004718 1.6e-42 177.2 154 58.4
Thhalv10000199m.g Eutrema salsugineum HOM05D003869 ORTHO05D004718 1.6e-42 177.2 155 61.9
Thhalv10000198m.g Eutrema salsugineum HOM05D003869 ORTHO05D004718 3.5e-42 176.0 153 58.8
AL4G18550 Arabidopsis lyrata HOM05D003869 ORTHO05D004718 4.5e-42 175.6 153 58.2
AL4G15530 Arabidopsis lyrata HOM05D003869 ORTHO05D004718 5.9e-42 175.3 152 60.5
Sp4g03220 Schrenkiella parvula HOM05D003869 ORTHO05D004718 5.9e-42 175.3 155 60.0
Thhalv10000460m.g Eutrema salsugineum HOM05D003869 ORTHO05D004718 5.0e-41 172.2 146 61.0
Sp4g03230 Schrenkiella parvula HOM05D003869 ORTHO05D004718 5.0e-41 172.2 168 54.2
BolC4t26931H Brassica oleracea HOM05D003869 ORTHO05D004718 8.5e-41 171.4 152 55.3
Carub.0004s0430 Capsella rubella HOM05D003869 ORTHO05D004718 8.5e-41 171.4 152 55.3
Carub.0004s0420 Capsella rubella HOM05D003869 ORTHO05D004718 1.5e-40 170.6 151 57.0
C04p53760 Brassica napus HOM05D003869 ORTHO05D004718 2.5e-40 169.9 152 55.3
BcaC02g08489 Brassica carinata HOM05D003869 ORTHO05D004718 3.2e-40 169.5 152 55.3
C04p54420 Brassica napus HOM05D003869 ORTHO05D004718 7.2e-40 168.3 152 55.9
BcaB06g27998 Brassica carinata HOM05D003869 ORTHO05D004718 9.4e-40 167.9 152 55.3
BcaC02g08419 Brassica carinata HOM05D003869 ORTHO05D004718 1.6e-39 167.2 159 55.3
BolC4t26992H Brassica oleracea HOM05D003869 ORTHO05D004718 1.6e-39 167.2 159 55.3
A04p19090 Brassica napus HOM05D003869 ORTHO05D004718 3.6e-39 166.0 152 53.9
BraA04t17507Z Brassica rapa HOM05D003869 ORTHO05D004718 6.1e-39 165.2 152 53.9
BolC4t26933H Brassica oleracea HOM05D003869 ORTHO05D004718 8.0e-39 164.9 157 58.0
AL4G14520 Arabidopsis lyrata HOM05D003869 ORTHO05D004718 1.4e-38 164.1 161 53.4
CARHR116990 Cardamine hirsuta HOM05D003869 ORTHO05D004718 2.3e-38 163.3 151 54.3
C04p54430 Brassica napus HOM05D003869 ORTHO05D004718 4.0e-38 162.5 156 53.8
Carub.0004s0354 Capsella rubella HOM05D003869 ORTHO05D004718 5.2e-38 162.2 152 55.9
BcaB06g28002 Brassica carinata HOM05D003869 ORTHO05D004718 8.8e-38 161.4 156 53.2
C04p53780 Brassica napus HOM05D003869 ORTHO05D004718 8.8e-38 161.4 157 57.3
BcaC02g08486 Brassica carinata HOM05D003869 ORTHO05D004718 2.6e-37 159.8 156 57.1
A04p18540 Brassica napus HOM05D003869 ORTHO05D004718 4.4e-37 159.1 168 55.4
BraA04t17462Z Brassica rapa HOM05D003869 ORTHO05D004718 4.4e-37 159.1 168 55.4
BraA04t17464Z Brassica rapa HOM05D003869 ORTHO05D004718 4.4e-37 159.1 168 55.4
BraA04t17508Z Brassica rapa HOM05D003869 ORTHO05D004718 1.7e-36 157.1 146 54.8
CARHR117860 Cardamine hirsuta HOM05D003869 ORTHO05D004718 8.3e-36 154.8 132 56.1
BcaC02g08422 Brassica carinata HOM05D003869 ORTHO05D004718 1.4e-35 154.1 158 51.3
A04p19100 Brassica napus HOM05D003869 ORTHO05D004718 1.4e-35 154.1 163 51.5
C04p54410 Brassica napus HOM05D003869 ORTHO05D004718 1.4e-35 154.1 158 51.3
BraA04t17506Z Brassica rapa HOM05D003869 ORTHO05D004718 1.8e-35 153.7 164 49.4
CARHR116880 Cardamine hirsuta HOM05D003869 ORTHO05D004718 2.4e-35 153.3 138 56.5
BcaC02g08420 Brassica carinata HOM05D003869 ORTHO05D004718 3.1e-35 152.9 156 51.3
CARHR117030 Cardamine hirsuta HOM05D003869 ORTHO05D004718 3.1e-35 152.9 132 57.6
A04p19070 Brassica napus HOM05D003869 ORTHO05D004718 4.1e-35 152.5 164 48.8
AT2G24250 Arabidopsis thaliana HOM05D003869 ORTHO05D004718 7.0e-35 151.8 151 55.0
CARHR116940 Cardamine hirsuta HOM05D003869 ORTHO05D004718 7.0e-35 151.8 151 53.6
Thhalv10000613m.g Eutrema salsugineum HOM05D003869 ORTHO05D004718 9.1e-35 151.4 157 49.0
Sp4g03710 Schrenkiella parvula HOM05D003869 ORTHO05D004718 1.2e-34 151.0 148 53.4
BolC4t26932H Brassica oleracea HOM05D003869 ORTHO05D004718 1.6e-34 150.6 156 54.5
BolC4t26987H Brassica oleracea HOM05D003869 ORTHO05D004718 1.6e-34 150.6 158 50.0
Thhalv10000175m.g Eutrema salsugineum HOM05D003869 ORTHO05D004718 2.7e-34 149.8 162 50.0
C04p54500 Brassica napus HOM05D003869 ORTHO05D004718 5.9e-34 148.7 153 51.6
CARHR117020 Cardamine hirsuta HOM05D003869 ORTHO05D004718 1.0e-33 147.9 158 50.0
A04p19120 Brassica napus HOM05D003869 ORTHO05D004718 1.3e-33 147.5 156 51.9
Thhalv10019678m.g Eutrema salsugineum HOM05D003869 ORTHO05D004718 1.3e-33 147.5 138 55.1
Thhalv10000192m.g Eutrema salsugineum HOM05D003869 ORTHO05D004718 6.5e-33 145.2 158 48.7
BcaC02g08416 Brassica carinata HOM05D003869 ORTHO05D004718 1.1e-32 144.4 156 50.6
BolC4t26993H Brassica oleracea HOM05D003869 ORTHO05D004718 1.1e-32 144.4 156 50.6
C04p53770 Brassica napus HOM05D003869 ORTHO05D004718 3.2e-32 142.9 148 53.4
CARHR118620 Cardamine hirsuta HOM05D003869 ORTHO05D004718 6.1e-31 138.7 151 53.0
BcaB01g02713 Brassica carinata HOM05D003869 ORTHO05D004718 1.8e-30 137.1 156 50.0
BcaB01g02998 Brassica carinata HOM05D003869 ORTHO05D004718 5.2e-30 135.6 150 49.3
A04p19110 Brassica napus HOM05D003869 ORTHO05D004718 1.2e-29 134.4 160 48.8
BraA04t17509Z Brassica rapa HOM05D003869 ORTHO05D004718 1.2e-29 134.4 160 48.8
BraA04t17463Z Brassica rapa HOM05D003869 ORTHO05D004718 2.0e-29 133.7 156 53.2
C03p32370 Brassica napus HOM05D003869 ORTHO05D004718 3.4e-29 132.9 181 43.6
BcaC02g08418 Brassica carinata HOM05D003869 ORTHO05D004718 5.7e-29 132.1 160 48.8
A03p26980 Brassica napus HOM05D003869 ORTHO05D004718 7.5e-29 131.7 155 49.0
AL4G15600 Arabidopsis lyrata HOM05D003869 ORTHO05D004718 1.7e-28 130.6 120 59.2
BcaB06g28006 Brassica carinata HOM05D003869 ORTHO05D004718 6.3e-28 128.6 157 47.1
BraA03t11909Z Brassica rapa HOM05D003869 ORTHO05D004718 6.3e-28 128.6 155 48.4
BolC4t26990H Brassica oleracea HOM05D003869 ORTHO05D004718 8.3e-28 128.3 127 49.6
Carub.0004s0356 Capsella rubella HOM05D003869 ORTHO05D004718 1.1e-27 127.9 105 62.9
CARHR116960 Cardamine hirsuta HOM05D003869 ORTHO05D004718 1.4e-27 127.5 123 49.6
BcaC06g33784 Brassica carinata HOM05D003869 ORTHO05D004718 1.0e-25 121.3 152 48.0
C07p36960 Brassica napus HOM05D003869 ORTHO05D004718 1.0e-25 121.3 152 48.0
BolC7t44209H Brassica oleracea HOM05D003869 ORTHO05D004718 1.0e-25 121.3 152 48.0
CARHR117230 Cardamine hirsuta HOM05D003869 ORTHO05D004718 1.7e-25 120.6 123 47.2
A06p40890 Brassica napus HOM05D003869 ORTHO05D004718 1.1e-24 117.9 152 46.7
BraA06t27011Z Brassica rapa HOM05D003869 ORTHO05D004718 1.1e-24 117.9 152 46.7
BcaB06g28005 Brassica carinata HOM05D003869 ORTHO05D004718 3.3e-24 116.3 151 43.0
AL4G14530 Arabidopsis lyrata HOM05D003869 ORTHO05D004718 9.5e-24 114.8 107 52.3
BcaC02g08487 Brassica carinata HOM05D003869 ORTHO05D004718 2.0e-21 107.1 76 69.7
C04p54480 Brassica napus HOM05D003869 ORTHO05D004718 1.8e-19 100.5 159 40.9
BcaC02g08421 Brassica carinata HOM05D003869 ORTHO05D004718 3.2e-19 99.8 127 44.1
AL4G18490 Arabidopsis lyrata HOM05D003869 ORTHO05D004718 3.5e-18 96.3 147 40.1
A04p18490 Brassica napus HOM05D003869 ORTHO05D004718 7.8e-18 95.1 64 68.8
CARHR116700 Cardamine hirsuta HOM05D003869 ORTHO05D004718 4.3e-16 89.4 57 71.9
C09p12940 Brassica napus HOM05D003869 ORTHO05D004718 5.2e-14 82.4 161 31.7
BolC9t54185H Brassica oleracea HOM05D003869 ORTHO05D004718 5.2e-14 82.4 161 31.7
BcaC04g23024 Brassica carinata HOM05D003869 ORTHO05D004718 8.9e-14 81.6 161 31.7
Thhalv10000675m.g Eutrema salsugineum HOM05D003869 ORTHO05D004718 8.9e-14 81.6 70 55.7
A04p18510 Brassica napus HOM05D003869 ORTHO05D004718 4.4e-13 79.3 53 73.6
AT5G24040 Arabidopsis thaliana HOM05D000151 ORTHO05D011749 4.1e-11 72.8 184 30.4
Sp3g29520 Schrenkiella parvula HOM05D003869 ORTHO05D004718 4.6e-10 69.3 162 32.1
Carub.0003s3034 Capsella rubella HOM05D003869 ORTHO05D004718 6.0e-10 68.9 159 32.7
CARHR053970 Cardamine hirsuta HOM05D003869 ORTHO05D004718 6.0e-10 68.9 164 31.1
Carub.0003s3004 Capsella rubella HOM05D003869 ORTHO05D004718 1.0e-09 68.2 157 33.8
BcaB07g31773 Brassica carinata HOM05D003869 ORTHO05D004718 1.3e-09 67.8 161 32.9
CARHR053960 Cardamine hirsuta HOM05D003869 ORTHO05D004718 1.3e-09 67.8 139 33.8
ECA246G4358 Erigeron canadensis HOM05D000151 ORTHO05D000074 3.0e-09 66.6 166 30.1
Carub.0131s0001 Capsella rubella HOM05D003869 ORTHO05D004718 3.9e-09 66.2 158 32.9
CARHR117870 Cardamine hirsuta HOM05D003869 ORTHO05D004718 5.0e-09 65.9 48 64.6
Carub.0003s3003 Capsella rubella HOM05D003869 ORTHO05D004718 8.6e-09 65.1 169 32.0
Aa31LG11G3330 Aethionema arabicum HOM05D000151 ORTHO05D011749 1.5e-08 64.3 139 30.2
Carub.0003s3001 Capsella rubella HOM05D003869 ORTHO05D004718 1.5e-08 64.3 158 32.9
Carub.0003s3002 Capsella rubella HOM05D003869 ORTHO05D004718 1.5e-08 64.3 158 32.9
MSTRG.19960 Avicennia marina HOM05D000151 ORTHO05D000074 2.5e-08 63.5 166 27.1
Psat5g209400 Pisum sativum HOM05D000151 ORTHO05D000074 2.5e-08 63.5 171 27.5
CARHR106540 Cardamine hirsuta HOM05D003869 ORTHO05D004718 4.3e-08 62.8 144 32.6
QL11p052376 Quercus lobata HOM05D000151 ORTHO05D000074 5.6e-08 62.4 123 35.0
QL11p053242 Quercus lobata HOM05D000151 ORTHO05D000074 5.6e-08 62.4 123 35.0
BcaB06g28001 Brassica carinata HOM05D003869 ORTHO05D004718 7.3e-08 62.0 70 44.3
QL11p053223 Quercus lobata HOM05D000151 ORTHO05D000074 9.5e-08 61.6 133 33.8
Sp3g29510 Schrenkiella parvula HOM05D003869 ORTHO05D004718 9.5e-08 61.6 143 32.2
Medtr3g030480 Medicago truncatula HOM05D000151 ORTHO05D000074 1.2e-07 61.2 144 31.2
Psat5g209160 Pisum sativum HOM05D000151 ORTHO05D000074 1.6e-07 60.8 150 28.7
AT2G16290 Arabidopsis thaliana HOM05D003869 ORTHO05D004718 2.1e-07 60.5 146 35.6
Haze_02069 Corylus avellana HOM05D000151 ORTHO05D000074 2.1e-07 60.5 181 30.4
Sp4g03240 Schrenkiella parvula HOM05D003869 ORTHO05D004718 2.8e-07 60.1 48 52.1
BolC9t54187H Brassica oleracea HOM05D003869 ORTHO05D004718 3.6e-07 59.7 126 36.5
AL4G18570 Arabidopsis lyrata HOM05D003869 ORTHO05D004718 4.7e-07 59.3 49 59.2
CARHR116980 Cardamine hirsuta HOM05D003869 ORTHO05D004718 8.0e-07 58.5 57 57.9
QL11p052366 Quercus lobata HOM05D000151 ORTHO05D000074 1.1e-06 58.2 133 33.1
MELO3C007953.2 Cucumis melo HOM05D000151 ORTHO05D000074 1.4e-06 57.8 163 27.6
THA.LOC104821381 Tarenaya hassleriana HOM05D000151 ORTHO05D011749 1.4e-06 57.8 127 29.1
Dinv14141 Davidia involucrata HOM05D000151 ORTHO05D000074 1.8e-06 57.4 175 26.9
VMungo1080G0462 Vigna mungo HOM05D000151 ORTHO05D000074 1.8e-06 57.4 163 31.9
CsaV3_6G047620 Cucumis sativus L. HOM05D000151 ORTHO05D000074 2.3e-06 57.0 166 27.1
Thhalv10005528m.g Eutrema salsugineum HOM05D000151 ORTHO05D011749 2.3e-06 57.0 182 26.4
Carub.0003s2999 Capsella rubella HOM05D003869 ORTHO05D004718 3.1e-06 56.6 157 31.2
HanXRQChr15g0477851 Helianthus annuus HOM05D000151 ORTHO05D000074 3.1e-06 56.6 165 27.3
Sabra05G0086100 Salix brachista HOM05D000151 ORTHO05D000074 4.0e-06 56.2 143 32.2
Carub.0006s2176 Capsella rubella HOM05D000151 ORTHO05D011749 5.2e-06 55.8 145 28.3
Cfa005316 Carpinus fangiana HOM05D000151 ORTHO05D000074 5.2e-06 55.8 181 28.2
ClCG01G020700 Citrullus lanatus HOM05D000151 ORTHO05D000074 5.2e-06 55.8 165 29.1
Cc08_g14380 Coffea canephora HOM05D000151 ORTHO05D000074 5.2e-06 55.8 150 30.7
Glyma.02G043500 Glycine max HOM05D000151 ORTHO05D000074 5.2e-06 55.8 178 29.8
Medtr2g041510 Medicago truncatula HOM05D000151 ORTHO05D000074 5.2e-06 55.8 180 29.4
arahy.Tifrunner.gnm1.ann1.29PSUQ Arachis hypogaea HOM05D000151 ORTHO05D000074 6.8e-06 55.5 178 28.1
A04p18500 Brassica napus HOM05D003869 ORTHO05D004718 6.8e-06 55.5 76 46.1
CiPaw.05G087200 Carya illinoinensis HOM05D000151 ORTHO05D000074 6.8e-06 55.5 161 30.4
Migut.B00040 Erythranthe guttata HOM05D000151 ORTHO05D000074 6.8e-06 55.5 165 27.9
Lsat_1_v5_gn_3_47300 Lactuca sativa HOM05D004423 ORTHO05D005464 6.8e-06 55.5 163 28.2
Lj7P286T40 Lonicera japonica HOM05D000151 ORTHO05D000074 6.8e-06 55.5 157 26.8
Sed0022869 Sechium edule HOM05D000151 ORTHO05D000074 6.8e-06 55.5 141 29.8
AT2G17036 Arabidopsis thaliana HOM05D000151 ORTHO05D000074 8.9e-06 55.1 151 28.5
arahy.Tifrunner.gnm1.ann1.1NU69P Arachis hypogaea HOM05D000151 ORTHO05D000074 8.9e-06 55.1 178 28.1


User provided reference genes

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