Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL4G15140 Arabidopsis lyrata HOM05D014166 ORTHO05D016569 2.2e-61 238.8 122 100.0
AL6G46554 Arabidopsis lyrata HOM05D014166 ORTHO05D016569 1.6e-40 169.5 86 100.0
AL1G54710 Arabidopsis lyrata HOM05D014166 ORTHO05D016569 3.6e-40 168.3 86 98.8
AL2G14780 Arabidopsis lyrata HOM05D014166 ORTHO05D016569 4.3e-33 144.8 139 61.9
AL5G35950 Arabidopsis lyrata HOM05D014166 ORTHO05D016569 7.6e-30 134.0 75 92.0
AL1G55120 Arabidopsis lyrata HOM05D014166 ORTHO05D016569 3.8e-29 131.7 169 50.3
AL7G37510 Arabidopsis lyrata HOM05D014166 ORTHO05D079694 5.8e-22 107.8 62 88.7
AL6G52320 Arabidopsis lyrata HOM05D014166 ORTHO05D080416 9.9e-22 107.1 62 87.1
AL6G47430 Arabidopsis lyrata HOM05D014166 ORTHO05D016569 3.4e-14 82.0 39 100.0
AL8G31720 Arabidopsis lyrata HOM05D014166 ORTHO05D016569 2.9e-13 79.0 39 97.4
AL3G26580 Arabidopsis lyrata HOM05D014166 ORTHO05D016569 1.2e-11 73.6 39 92.3
AL1G14070 Arabidopsis lyrata HOM05D000087 ORTHO05D001941 2.8e-08 62.4 64 54.7
Thhalv10024854m.g Eutrema salsugineum HOM05D000087 ORTHO05D001941 2.8e-08 62.4 72 48.6
AL7G41870 Arabidopsis lyrata HOM05D000087 ORTHO05D001941 4.8e-08 61.6 36 80.6
AT4G14360 Arabidopsis thaliana HOM05D000087 ORTHO05D001941 4.8e-08 61.6 36 80.6
BraA07t28711Z Brassica rapa HOM05D000087 ORTHO05D001941 4.8e-08 61.6 84 46.4
Carub.0007s2790 Capsella rubella HOM05D000087 ORTHO05D001941 4.8e-08 61.6 36 80.6
AT1G04430 Arabidopsis thaliana HOM05D000087 ORTHO05D001941 6.2e-08 61.2 64 53.1
AT3G23300 Arabidopsis thaliana HOM05D000087 ORTHO05D001941 1.1e-07 60.5 38 76.3
A07p09170 Brassica napus HOM05D000087 ORTHO05D001941 1.4e-07 60.1 84 46.4
Carub.0001s0361 Capsella rubella HOM05D000087 ORTHO05D001941 1.4e-07 60.1 36 80.6
Aa31LG8G9840 Aethionema arabicum HOM05D000087 ORTHO05D001941 1.8e-07 59.7 38 73.7
Aa31LG9G2980 Aethionema arabicum HOM05D000087 ORTHO05D001941 1.8e-07 59.7 36 77.8
C07p14160 Brassica napus HOM05D000087 ORTHO05D001941 1.8e-07 59.7 84 45.2
Glyma.10G037900 Glycine max HOM05D000087 ORTHO05D001941 1.8e-07 59.7 56 51.8
AL3G37950 Arabidopsis lyrata HOM05D000087 ORTHO05D001941 2.4e-07 59.3 38 73.7
Thhalv10020317m.g Eutrema salsugineum HOM05D000087 ORTHO05D001941 2.4e-07 59.3 38 73.7
BolC7t41912H Brassica oleracea HOM05D000087 ORTHO05D001941 3.1e-07 58.9 84 45.2
Thhalv10007078m.g Eutrema salsugineum HOM05D000087 ORTHO05D001941 3.1e-07 58.9 36 77.8
Sp7g12430 Schrenkiella parvula HOM05D000087 ORTHO05D001941 3.1e-07 58.9 34 79.4
BcaB03g14627 Brassica carinata HOM05D000087 ORTHO05D001941 5.3e-07 58.2 38 71.1
BcaB06g26485 Brassica carinata HOM05D000087 ORTHO05D001941 5.3e-07 58.2 38 71.1
BcaC01g03376 Brassica carinata HOM05D000087 ORTHO05D001941 5.3e-07 58.2 38 71.1
BcaC05g26800 Brassica carinata HOM05D000087 ORTHO05D001941 5.3e-07 58.2 38 71.1
C03p53130 Brassica napus HOM05D000087 ORTHO05D001941 5.3e-07 58.2 38 71.1
BolC3t17578H Brassica oleracea HOM05D000087 ORTHO05D001941 5.3e-07 58.2 38 71.1
BraA03t13464Z Brassica rapa HOM05D000087 ORTHO05D001941 5.3e-07 58.2 38 71.1
A08p36940 Brassica napus HOM05D000087 ORTHO05D001941 6.9e-07 57.8 36 75.0
A10p02870 Brassica napus HOM05D000087 ORTHO05D001941 6.9e-07 57.8 36 75.0
C05p02620 Brassica napus HOM05D000087 ORTHO05D001941 6.9e-07 57.8 36 75.0
C08p01140 Brassica napus HOM05D000087 ORTHO05D001941 6.9e-07 57.8 36 75.0
BolC5t29043H Brassica oleracea HOM05D000087 ORTHO05D001941 6.9e-07 57.8 36 75.0
BraA08t35594Z Brassica rapa HOM05D000087 ORTHO05D001941 6.9e-07 57.8 36 75.0
BraA10t42554Z Brassica rapa HOM05D000087 ORTHO05D001941 6.9e-07 57.8 36 75.0
TPR.G1483 Trifolium pratense HOM05D000087 ORTHO05D001941 6.9e-07 57.8 37 73.0
CARHR003770 Cardamine hirsuta HOM05D000087 ORTHO05D001941 9.0e-07 57.4 64 50.0
Sp3g20960 Schrenkiella parvula HOM05D000087 ORTHO05D001941 9.0e-07 57.4 39 69.2
A03p43230 Brassica napus HOM05D000087 ORTHO05D001941 1.2e-06 57.0 34 76.5
BolC8t46914H Brassica oleracea HOM05D000087 ORTHO05D001941 1.2e-06 57.0 36 75.0
Lalb_Chr21g0312061 Lupinus albus HOM05D000087 ORTHO05D001941 1.2e-06 57.0 36 75.0
Nn1g02806 Nelumbo nucifera HOM05D000087 ORTHO05D001941 1.2e-06 57.0 36 75.0
Lj5g0017858 Lotus japonicus HOM05D000087 ORTHO05D001941 1.5e-06 56.6 37 70.3
Sp1g03250 Schrenkiella parvula HOM05D000087 ORTHO05D001941 1.5e-06 56.6 36 75.0
THA.LOC104808628 Tarenaya hassleriana HOM05D000087 ORTHO05D001941 1.5e-06 56.6 36 72.2
arahy.Tifrunner.gnm1.ann1.QRIX9Q Arachis hypogaea HOM05D000087 ORTHO05D001941 2.0e-06 56.2 36 72.2
arahy.Tifrunner.gnm1.ann1.XUHW1T Arachis hypogaea HOM05D000087 ORTHO05D001941 2.0e-06 56.2 36 72.2
THA.LOC104801081 Tarenaya hassleriana HOM05D000087 ORTHO05D001941 2.0e-06 56.2 36 75.0
VMungo0720G1934 Vigna mungo HOM05D000087 ORTHO05D001941 2.0e-06 56.2 56 48.2
Ca_09863_v3 Cicer arietinum L. HOM05D000087 ORTHO05D001941 2.6e-06 55.8 34 76.5
Glyma.10G181400 Glycine max HOM05D000087 ORTHO05D001941 2.6e-06 55.8 36 72.2
Medtr1g075900 Medicago truncatula HOM05D000087 ORTHO05D001941 2.6e-06 55.8 34 76.5
Psat6g116640 Pisum sativum HOM05D000087 ORTHO05D001941 2.6e-06 55.8 34 76.5
Actinidia40047 Actinidia chinensis HOM05D000087 ORTHO05D001941 3.4e-06 55.5 37 70.3
Carub.0003s2353 Capsella rubella HOM05D000087 ORTHO05D001941 3.4e-06 55.5 38 68.4
CiPaw.02G111300 Carya illinoinensis HOM05D000087 ORTHO05D001941 3.4e-06 55.5 45 57.8
COL.COLO4_15886 Corchorus olitorius HOM05D000087 ORTHO05D001941 3.4e-06 55.5 37 70.3
Glyma.20G209000 Glycine max HOM05D000087 ORTHO05D001941 3.4e-06 55.5 34 73.5
Dinv29850 Davidia involucrata HOM05D000087 ORTHO05D001941 4.5e-06 55.1 36 69.4
Duzib212G0216 Durio zibethinus HOM05D000087 ORTHO05D001941 4.5e-06 55.1 37 70.3
Eucgr.H03037 Eucalyptus grandis HOM05D000087 ORTHO05D001941 4.5e-06 55.1 38 68.4
Gohir.A10G110900 Gossypium hirsutum HOM05D000087 ORTHO05D001941 4.5e-06 55.1 44 61.4
Thecc.04G256500 Theobroma cacao HOM05D000087 ORTHO05D001941 4.5e-06 55.1 37 70.3
CARHR099270 Cardamine hirsuta HOM05D000087 ORTHO05D001941 5.8e-06 54.7 38 68.4
ClCG06G007040 Citrullus lanatus HOM05D000087 ORTHO05D001941 5.8e-06 54.7 36 72.2
Migut.N00277 Erythranthe guttata HOM05D000087 ORTHO05D001941 5.8e-06 54.7 34 73.5
Gorai.005G050500 Gossypium raimondii HOM05D000087 ORTHO05D001941 5.8e-06 54.7 37 70.3
Hma1.2p1_0267F.1_g107230 Hydrangea macrophylla HOM05D000087 ORTHO05D001941 5.8e-06 54.7 36 69.4
Lalb_Chr02g0152541 Lupinus albus HOM05D000087 ORTHO05D001941 5.8e-06 54.7 65 41.5
Oeu059154.2 Olea europaea HOM05D000087 ORTHO05D001941 5.8e-06 54.7 36 72.2
SGA_v2.0_scaffold111G31486 Striga asiatica HOM05D000087 ORTHO05D001941 5.8e-06 54.7 36 72.2
Migut.G00510 Erythranthe guttata HOM05D000087 ORTHO05D001941 7.6e-06 54.3 36 69.4
Glyma.02G002900 Glycine max HOM05D000087 ORTHO05D001941 7.6e-06 54.3 36 69.4
Glyma.10G006100 Glycine max HOM05D000087 ORTHO05D001941 7.6e-06 54.3 36 69.4
Gohir.D10G156400 Gossypium hirsutum HOM05D000087 ORTHO05D001941 7.6e-06 54.3 44 59.1
Gorai.011G175000 Gossypium raimondii HOM05D000087 ORTHO05D001941 7.6e-06 54.3 44 59.1
THA.LOC104826086 Tarenaya hassleriana HOM05D000087 ORTHO05D001941 7.6e-06 54.3 36 69.4
CANSAT78G0688 Cannabis sativa HOM05D000087 ORTHO05D001941 1.0e-05 53.9 36 69.4
Duzib151G0662 Durio zibethinus HOM05D000087 ORTHO05D001941 1.0e-05 53.9 37 67.6
ECA240G2877 Erigeron canadensis HOM05D000087 ORTHO05D001941 1.0e-05 53.9 36 69.4
HanXRQChr13g0420441 Helianthus annuus HOM05D000087 ORTHO05D001941 1.0e-05 53.9 36 69.4
HanXRQChr13g0421161 Helianthus annuus HOM05D000087 ORTHO05D001941 1.0e-05 53.9 36 69.4
Nitab4.5_0000778g0020 Nicotiana tabacum HOM05D000087 ORTHO05D001941 1.0e-05 53.9 34 73.5
Sabra02G0029800 Salix brachista HOM05D000087 ORTHO05D001941 1.0e-05 53.9 69 49.3
VMungo1383G2505 Vigna mungo HOM05D000087 ORTHO05D001941 1.0e-05 53.9 35 68.6


User provided reference genes

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