Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL4G14830 Arabidopsis lyrata HOM05D007770 ORTHO05D009827 7.5e-73 276.9 127 100.0
AT2G24395 Arabidopsis thaliana HOM05D007770 ORTHO05D009827 1.9e-63 245.7 133 86.5
Carub.0004s0375 Capsella rubella HOM05D007770 ORTHO05D009827 6.6e-61 237.3 131 86.3
Thhalv10000372m.g Eutrema salsugineum HOM05D007770 ORTHO05D009827 1.3e-56 223.0 132 80.3
Sp4g03420 Schrenkiella parvula HOM05D007770 ORTHO05D009827 3.5e-54 214.9 135 74.8
Aa31sc132G30 Aethionema arabicum HOM05D007770 ORTHO05D009827 3.9e-53 211.5 138 72.5
CARHR117660 Cardamine hirsuta HOM05D007770 ORTHO05D009827 3.3e-52 208.4 135 74.8
BcaC02g08464 Brassica carinata HOM05D007770 ORTHO05D009827 6.6e-45 184.1 135 68.9
A04p18710 Brassica napus HOM05D007770 ORTHO05D009827 1.5e-44 183.0 135 68.1
BraA04t17481Z Brassica rapa HOM05D007770 ORTHO05D009827 6.2e-43 177.6 135 66.7
BolC4t26952H Brassica oleracea HOM05D007770 ORTHO05D009827 9.9e-41 170.2 137 64.2
C04p54000 Brassica napus HOM05D007770 ORTHO05D009827 1.8e-37 159.5 137 62.8
FvH4_2g36440 Fragaria vesca HOM05D007770 ORTHO05D009827 1.2e-33 146.7 127 55.1
QL12p025908 Quercus lobata HOM05D007770 ORTHO05D009827 1.2e-33 146.7 122 55.7
FAN27G1234 Fragaria x ananassa HOM05D007770 ORTHO05D009827 2.6e-33 145.6 127 55.1
Ciclev10010266m.g Citrus clementina HOM05D007770 ORTHO05D009827 9.9e-33 143.7 109 60.6
TAR625G0611 Trochodendron aralioides HOM05D007770 ORTHO05D009827 4.9e-32 141.4 109 58.7
Dinv13246 Davidia involucrata HOM05D007770 ORTHO05D009827 8.4e-32 140.6 118 55.1
Nn8g41062 Nelumbo nucifera HOM05D007770 ORTHO05D009827 8.4e-32 140.6 105 61.0
Duzib150G1352 Durio zibethinus HOM05D007770 ORTHO05D009827 1.1e-31 140.2 127 55.9
Atru.chr7.2683 Acer truncatum HOM05D007770 ORTHO05D009827 1.4e-31 139.8 125 53.6
CiPaw.08G021600 Carya illinoinensis HOM05D007770 ORTHO05D009827 1.4e-31 139.8 118 55.9
MD08G1124100 Malus domestica HOM05D007770 ORTHO05D009827 1.4e-31 139.8 126 55.6
Eucgr.C04242 Eucalyptus grandis HOM05D007770 ORTHO05D009827 1.6e-30 136.3 110 59.1
MSTRG.13938 Avicennia marina HOM05D007770 ORTHO05D009827 3.5e-30 135.2 127 50.4
CANSAT56G0680 Cannabis sativa HOM05D007770 ORTHO05D009827 1.0e-29 133.7 72 76.4
Manes.16G137500 Manihot esculenta HOM05D007770 ORTHO05D009827 1.8e-29 132.9 129 50.4
PSO063G4434 Papaver somniferum HOM05D007770 ORTHO05D009827 2.3e-29 132.5 104 55.8
Aqoxy7G02675 Aquilegia oxysepala HOM05D007770 ORTHO05D009827 1.1e-28 130.2 108 55.6
Lsat_1_v5_gn_3_26540 Lactuca sativa HOM05D007770 ORTHO05D009827 1.9e-28 129.4 90 63.3
Phvul.009G103700 Phaseolus vulgaris HOM05D007770 ORTHO05D009827 2.5e-28 129.0 105 56.2
Lj1g0002810 Lotus japonicus HOM05D007770 ORTHO05D009827 4.3e-28 128.3 119 52.9
VMungo1309G0540 Vigna mungo HOM05D007770 ORTHO05D009827 5.6e-28 127.9 123 52.0
CSS0009557 Camellia sinensis var. sinensis HOM05D000003 ORTHO05D009827 1.6e-27 126.3 72 68.1
Cc08_g05750 Coffea canephora HOM05D007770 ORTHO05D009827 1.6e-27 126.3 73 68.5
Prupe.1G455800 Prunus persica HOM05D007770 ORTHO05D009827 2.8e-27 125.6 127 48.8
Migut.E01418 Erythranthe guttata HOM05D007770 ORTHO05D009827 4.8e-27 124.8 104 52.9
Psat5g024680 Pisum sativum HOM05D007770 ORTHO05D009827 8.2e-27 124.0 97 57.7
Glyma.04G077900 Glycine max HOM05D007770 ORTHO05D009827 1.1e-26 123.6 82 68.3
ECA246G2424 Erigeron canadensis HOM05D007770 ORTHO05D009827 1.4e-26 123.2 108 55.6
FAN20G1378 Fragaria x ananassa HOM05D007770 ORTHO05D009827 2.4e-26 122.5 127 49.6
TPR.G12312 Trifolium pratense HOM05D007770 ORTHO05D009827 4.0e-26 121.7 65 75.4
GSVIVG01035563001 Vitis vinifera HOM05D007770 ORTHO05D009827 5.3e-26 121.3 111 54.1
Medtr3g109170 Medicago truncatula HOM05D007770 ORTHO05D009827 3.4e-25 118.6 107 50.5
TWI34G0832 Tripterygium wilfordii HOM05D007770 ORTHO05D009827 7.6e-25 117.5 123 47.2
CSS0027547 Camellia sinensis var. sinensis HOM05D007770 ORTHO05D009827 1.3e-24 116.7 72 65.3
Thecc.09G003100 Theobroma cacao HOM05D007770 ORTHO05D009827 2.2e-24 115.9 132 47.0
Nitab4.5_0001942g0170 Nicotiana tabacum HOM05D007770 ORTHO05D009827 2.9e-24 115.5 101 55.4
Gohir.D06G109700 Gossypium hirsutum HOM05D007770 ORTHO05D009827 6.5e-24 114.4 99 54.5
Gorai.010G124500 Gossypium raimondii HOM05D007770 ORTHO05D009827 6.5e-24 114.4 99 54.5
Sabra06G0215900 Salix brachista HOM05D007770 ORTHO05D009827 8.4e-24 114.0 123 46.3
HPP92_017098 Vanilla planifolia HOM05D007770 ORTHO05D009827 1.4e-23 113.2 74 62.2
Potri.006G278250 Populus trichocarpa HOM05D007770 ORTHO05D009827 1.9e-23 112.8 119 47.1
EL10Ac2g03698 Beta vulgaris HOM05D007770 ORTHO05D009827 4.2e-23 111.7 74 62.2
CAN.G480.16 Capsicum annuum HOM05D007770 ORTHO05D009827 5.5e-23 111.3 101 55.4
arahy.Tifrunner.gnm1.ann1.DWH8JW Arachis hypogaea HOM05D007770 ORTHO05D009827 2.1e-22 109.4 128 45.3
PGSC0003DMG400029583 Solanum tuberosum HOM05D007770 ORTHO05D009827 2.1e-22 109.4 101 53.5
arahy.Tifrunner.gnm1.ann1.SE3NL1 Arachis hypogaea HOM05D007770 ORTHO05D009827 4.6e-22 108.2 105 48.6
Sopen08g022850 Solanum pennellii HOM05D007770 ORTHO05D009827 4.6e-22 108.2 101 52.5
Solyc08g069230.3 Solanum lycopersicum HOM05D007770 ORTHO05D009827 6.0e-22 107.8 101 51.5
HanXRQChr17g0539271 Helianthus annuus HOM05D007770 ORTHO05D009827 1.0e-21 107.1 88 56.8
unitig_747.g21378 Utricularia gibba HOM05D007770 ORTHO05D009827 3.9e-21 105.1 102 47.1
Pp3c27_7640 Physcomitrium patens HOM05D007770 ORTHO05D009827 4.3e-20 101.7 116 44.8
Mapoly0035s0047 Marchantia polymorpha HOM05D007770 ORTHO05D009827 1.3e-19 100.1 74 55.4
RcHm_v2.0_Chr6g0305461 Rosa chinensis HOM05D007770 ORTHO05D009827 1.6e-19 99.8 123 46.3
DCAR_000666 Daucus carota HOM05D007770 ORTHO05D009827 3.7e-19 98.6 112 45.5
CBR_g3948 Chara braunii HOM05D007770 ORTHO05D009827 4.8e-19 98.2 68 58.8
CDE02G4318 Ceratophyllum demersum HOM05D007770 ORTHO05D009827 8.2e-19 97.4 86 52.3
FAN15G1940 Fragaria x ananassa HOM05D007770 ORTHO05D009827 8.2e-19 97.4 102 48.0
SalBow8G5425 Salvia bowleyana HOM05D007770 ORTHO05D009827 1.1e-18 97.1 101 45.5
CDE06G0935 Ceratophyllum demersum HOM05D007770 ORTHO05D009827 5.3e-18 94.7 86 51.2
Nitab4.5_0000970g0130 Nicotiana tabacum HOM05D007770 ORTHO05D009827 5.3e-18 94.7 73 60.3
CANSAT56G1809 Cannabis sativa HOM05D007770 ORTHO05D009827 9.0e-18 94.0 96 47.9
AagrBONN_evm.TU.Sc2ySwM_228.4990 Anthoceros agrestis HOM05D007770 ORTHO05D009827 2.6e-17 92.4 63 57.1
arahy.Tifrunner.gnm1.ann1.T2QDAL Arachis hypogaea HOM05D007770 ORTHO05D009827 3.4e-17 92.0 103 46.6
Gohir.A06G107400 Gossypium hirsutum HOM05D007770 ORTHO05D009827 4.5e-17 91.7 70 58.6
MELO3C011169.2 Cucumis melo HOM05D007770 ORTHO05D009827 1.7e-16 89.7 87 48.3
Actinidia25745 Actinidia chinensis HOM05D007770 ORTHO05D009827 5.0e-16 88.2 50 72.0
CsaV3_2G031200 Cucumis sativus L. HOM05D007770 ORTHO05D009827 8.5e-16 87.4 84 51.2
Zm00001eb035580 Zea mays HOM05D007770 ORTHO05D009827 8.5e-16 87.4 153 37.9
ClCG08G012500 Citrullus lanatus HOM05D007770 ORTHO05D009827 2.5e-15 85.9 85 48.2
Sed0000657 Sechium edule HOM05D007770 ORTHO05D009827 1.6e-14 83.2 98 46.9
Lalb_Chr23g0269281 Lupinus albus HOM05D007770 ORTHO05D009827 4.6e-14 81.6 102 42.2
MD15G1102800 Malus domestica HOM05D007770 ORTHO05D009827 1.0e-13 80.5 109 40.4
Os08g0520850 Oryza sativa ssp. japonica HOM05D007770 ORTHO05D009827 1.4e-13 80.1 46 69.6
HPP92_017108 Vanilla planifolia HOM05D007770 ORTHO05D009827 6.7e-13 77.8 55 56.4
Glyma.06G079000 Glycine max HOM05D007770 ORTHO05D009827 1.3e-08 63.5 33 69.7
Peaxi162Scf00213g00947 Petunia axillaris HOM05D007770 ORTHO05D009827 1.1e-07 60.5 102 36.3
MD08G1226400 Malus domestica HOM05D007770 ORTHO05D009827 5.5e-07 58.2 30 73.3


User provided reference genes

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