Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL4G14590 Arabidopsis lyrata HOM05D004278 ORTHO05D079904 2.8e-94 348.6 174 100.0
Thhalv10017872m.g Eutrema salsugineum HOM05D004278 ORTHO05D005544 2.3e-16 89.7 60 78.3
AL1G28860 Arabidopsis lyrata HOM05D004278 ORTHO05D005544 1.2e-15 87.4 43 97.7
AT1G16700 Arabidopsis thaliana HOM05D004278 ORTHO05D005544 1.2e-15 87.4 43 97.7
Thhalv10008714m.g Eutrema salsugineum HOM05D004278 ORTHO05D005544 5.8e-15 85.1 44 95.5
Sp1g14840 Schrenkiella parvula HOM05D004278 ORTHO05D005544 1.7e-14 83.6 43 93.0
CARHR017160 Cardamine hirsuta HOM05D004278 ORTHO05D005544 2.2e-14 83.2 43 93.0
Carub.0001s1643 Capsella rubella HOM05D004278 ORTHO05D005544 2.9e-14 82.8 42 95.2
Aa31LG7G1160 Aethionema arabicum HOM05D002153 ORTHO05D002137 6.4e-14 81.6 61 72.1
Carub.0002s2588 Capsella rubella HOM05D004278 ORTHO05D005544 8.3e-14 81.3 44 88.6
A06p12670 Brassica napus HOM05D004278 ORTHO05D005544 2.4e-13 79.7 44 88.6
AL2G39470 Arabidopsis lyrata HOM05D004278 ORTHO05D005544 1.2e-12 77.4 44 86.4
AT1G79010 Arabidopsis thaliana HOM05D004278 ORTHO05D005544 1.2e-12 77.4 44 86.4
BcaC08g45392 Brassica carinata HOM05D004278 ORTHO05D005544 1.2e-12 77.4 44 86.4
C06p30230 Brassica napus HOM05D004278 ORTHO05D005544 1.2e-12 77.4 44 86.4
BolC6t38186H Brassica oleracea HOM05D004278 ORTHO05D005544 1.2e-12 77.4 44 86.4
Sp5g34060 Schrenkiella parvula HOM05D004278 ORTHO05D005544 1.2e-12 77.4 44 86.4
BcaC08g47465 Brassica carinata HOM05D004278 ORTHO05D005544 3.5e-12 75.9 44 86.4
A07p44150 Brassica napus HOM05D004278 ORTHO05D005544 3.5e-12 75.9 44 86.4
C06p52880 Brassica napus HOM05D004278 ORTHO05D005544 3.5e-12 75.9 44 86.4
BolC6t40306H Brassica oleracea HOM05D004278 ORTHO05D005544 3.5e-12 75.9 44 86.4
BraA07t31923Z Brassica rapa HOM05D004278 ORTHO05D005544 3.5e-12 75.9 44 86.4
Thhalv10019110m.g Eutrema salsugineum HOM05D004278 ORTHO05D005544 3.5e-12 75.9 44 81.8
A07p27370 Brassica napus HOM05D004278 ORTHO05D005544 6.0e-12 75.1 44 84.1
BraA07t30378Z Brassica rapa HOM05D004278 ORTHO05D005544 6.0e-12 75.1 44 84.1
BcaC05g25531 Brassica carinata HOM05D002153 ORTHO05D002137 7.8e-12 74.7 42 85.7
Aa31LG4G1970 Aethionema arabicum HOM05D003886 ORTHO05D004587 1.3e-11 73.9 44 79.5
BraA06t24427Z Brassica rapa HOM05D002153 ORTHO05D002137 6.6e-11 71.6 45 82.2
BcaB02g07191 Brassica carinata HOM05D004278 ORTHO05D005544 8.6e-11 71.2 45 82.2
C05p14970 Brassica napus HOM05D004278 ORTHO05D005544 1.1e-10 70.9 44 84.1
BolC5t30212H Brassica oleracea HOM05D004278 ORTHO05D005544 1.1e-10 70.9 44 84.1
THA.LOC104815454 Tarenaya hassleriana HOM05D004278 ORTHO05D005544 3.3e-10 69.3 42 78.6
THA.LOC104804724 Tarenaya hassleriana HOM05D004278 ORTHO05D005544 1.2e-09 67.4 42 73.8
CARHR072680 Cardamine hirsuta HOM05D004278 ORTHO05D005544 2.8e-09 66.2 37 86.5
Eucgr.I00724 Eucalyptus grandis HOM05D004278 ORTHO05D005544 1.2e-07 60.8 55 60.0
MELO3C012522.2 Cucumis melo HOM05D004278 ORTHO05D005544 2.0e-07 60.1 55 61.8
CsaV3_7G023570 Cucumis sativus L. HOM05D004278 ORTHO05D005544 2.6e-07 59.7 55 61.8
Gorai.013G037100 Gossypium raimondii HOM05D004278 ORTHO05D005544 4.4e-07 58.9 42 69.0
Gohir.A13G034300 Gossypium hirsutum HOM05D004278 ORTHO05D005544 5.8e-07 58.5 42 69.0
Gohir.D13G032700 Gossypium hirsutum HOM05D004278 ORTHO05D005544 5.8e-07 58.5 42 69.0
Manes.15G163400 Manihot esculenta HOM05D004278 ORTHO05D005544 1.3e-06 57.4 55 56.4
PGR042G2304 Punica granatum HOM05D004278 ORTHO05D005544 1.3e-06 57.4 55 54.5
Thecc.02G085200 Theobroma cacao HOM05D004278 ORTHO05D005544 1.7e-06 57.0 41 70.7
COL.COLO4_25931 Corchorus olitorius HOM05D004278 ORTHO05D005544 2.9e-06 56.2 42 66.7
Sed0011539 Sechium edule HOM05D004278 ORTHO05D005544 2.9e-06 56.2 55 58.2
TAR376G0025 Trochodendron aralioides HOM05D002092 ORTHO05D005410 3.7e-06 55.8 42 64.3
Gohir.D02G215700 Gossypium hirsutum HOM05D004278 ORTHO05D005544 4.9e-06 55.5 43 72.1
Gorai.005G243700 Gossypium raimondii HOM05D004278 ORTHO05D005544 4.9e-06 55.5 43 72.1
PSO541G5084 Papaver somniferum HOM05D004278 ORTHO05D005544 4.9e-06 55.5 55 52.7
MD05G1066300 Malus domestica HOM05D004278 ORTHO05D005544 6.4e-06 55.1 55 56.4
PSO675G8903 Papaver somniferum HOM05D004278 ORTHO05D005544 6.4e-06 55.1 55 52.7
TAR628G0274 Trochodendron aralioides HOM05D004278 ORTHO05D005544 6.4e-06 55.1 55 52.7
Manes.17G101100 Manihot esculenta HOM05D004278 ORTHO05D005544 8.3e-06 54.7 55 58.2
TWI75G0915 Tripterygium wilfordii HOM05D004278 ORTHO05D005544 8.3e-06 54.7 42 64.3


User provided reference genes

Program Settings