Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL4G13970 Arabidopsis lyrata HOM05D005031 ORTHO05D006098 2.9e-91 338.6 174 100.0
AT2G23940 Arabidopsis thaliana HOM05D005031 ORTHO05D006098 1.2e-89 333.2 174 97.1
Carub.0004s0310 Capsella rubella HOM05D005031 ORTHO05D006098 4.5e-84 314.7 174 91.4
CARHR184610 Cardamine hirsuta HOM05D005031 ORTHO05D006098 1.1e-82 310.1 174 92.0
Sp7g28380 Schrenkiella parvula HOM05D005031 ORTHO05D006098 2.4e-82 308.9 174 88.5
Thhalv10026393m.g Eutrema salsugineum HOM05D005031 ORTHO05D006098 2.1e-81 305.8 174 86.2
C01p08550 Brassica napus HOM05D005031 ORTHO05D006098 3.9e-80 301.6 174 86.2
BcaNung00560 Brassica carinata HOM05D005031 ORTHO05D006098 5.1e-80 301.2 174 85.6
BcaNung00561 Brassica carinata HOM05D005031 ORTHO05D006098 5.1e-80 301.2 174 85.6
C07p57970 Brassica napus HOM05D005031 ORTHO05D006098 5.1e-80 301.2 174 85.6
BolC7t46255H Brassica oleracea HOM05D005031 ORTHO05D006098 5.1e-80 301.2 174 85.6
BcaC09g51840 Brassica carinata HOM05D005031 ORTHO05D006098 6.7e-80 300.8 174 86.8
A03p59910 Brassica napus HOM05D005031 ORTHO05D006098 1.1e-79 300.1 174 85.6
Aa31LG2G20010 Aethionema arabicum HOM05D005031 ORTHO05D006098 1.9e-79 299.3 174 84.5
BraA03t15048Z Brassica rapa HOM05D005031 ORTHO05D006098 2.5e-79 298.9 174 85.1
A01p07680 Brassica napus HOM05D005031 ORTHO05D006098 1.6e-78 296.2 174 84.5
BraA01t00711Z Brassica rapa HOM05D005031 ORTHO05D006098 2.1e-78 295.8 173 84.4
THA.LOC104803530 Tarenaya hassleriana HOM05D005031 ORTHO05D006098 5.3e-77 291.2 174 85.6
THA.LOC104819960 Tarenaya hassleriana HOM05D005031 ORTHO05D006098 6.9e-77 290.8 174 83.3
BolC1t00837H Brassica oleracea HOM05D005031 ORTHO05D006098 4.9e-75 284.6 167 83.8
AL7G21640 Arabidopsis lyrata HOM05D005031 ORTHO05D006098 6.5e-75 284.3 174 80.5
BolC1t00831H Brassica oleracea HOM05D005031 ORTHO05D006098 1.9e-74 282.7 167 83.2
Ca_21160_v3 Cicer arietinum L. HOM05D005031 ORTHO05D006098 5.5e-74 281.2 174 79.3
MD00G1059200 Malus domestica HOM05D005031 ORTHO05D006098 2.1e-73 279.3 174 79.3
Medtr4g130180 Medicago truncatula HOM05D005031 ORTHO05D006098 2.7e-73 278.9 174 78.7
Gohir.D08G098400 Gossypium hirsutum HOM05D005031 ORTHO05D006098 6.7e-72 274.2 174 79.3
Prupe.1G100400 Prunus persica HOM05D005031 ORTHO05D006098 6.7e-72 274.2 174 77.6
RcHm_v2.0_Chr4g0405231 Rosa chinensis HOM05D005031 ORTHO05D006098 1.1e-71 273.5 174 77.0
FvH4_3g25860 Fragaria vesca HOM05D005031 ORTHO05D006098 2.5e-71 272.3 174 77.0
FAN11G2096 Fragaria x ananassa HOM05D005031 ORTHO05D006098 2.5e-71 272.3 174 77.0
Gorai.004G106100 Gossypium raimondii HOM05D005031 ORTHO05D006098 2.5e-71 272.3 174 78.7
Ciclev10012924m.g Citrus clementina HOM05D005031 ORTHO05D006098 3.3e-71 271.9 174 76.4
Gohir.A08G087500 Gossypium hirsutum HOM05D005031 ORTHO05D006098 4.3e-71 271.6 174 78.2
TPR.G1244 Trifolium pratense HOM05D005031 ORTHO05D006098 5.7e-71 271.2 174 77.0
Duzib187G1655 Durio zibethinus HOM05D005031 ORTHO05D006098 7.4e-71 270.8 174 78.2
Thecc.09G157500 Theobroma cacao HOM05D005031 ORTHO05D006098 9.7e-71 270.4 174 78.2
Nn8g40193 Nelumbo nucifera HOM05D005031 ORTHO05D006098 1.3e-70 270.0 174 75.3
VMungo1215G0734 Vigna mungo HOM05D005031 ORTHO05D006098 1.3e-70 270.0 174 75.3
AT4G30500 Arabidopsis thaliana HOM05D005031 ORTHO05D006098 1.6e-70 269.6 174 77.6
Duzib168G1565 Durio zibethinus HOM05D005031 ORTHO05D006098 1.6e-70 269.6 174 77.6
CANSAT11G2524 Cannabis sativa HOM05D005031 ORTHO05D006098 2.2e-70 269.2 174 77.6
Duzib187G0728 Durio zibethinus HOM05D005031 ORTHO05D006098 2.2e-70 269.2 174 77.6
Potri.018G101100 Populus trichocarpa HOM05D005031 ORTHO05D006098 2.2e-70 269.2 174 75.9
FAN21G1649 Fragaria x ananassa HOM05D005031 ORTHO05D006098 2.8e-70 268.9 174 76.4
MD00G1091200 Malus domestica HOM05D005031 ORTHO05D006098 2.8e-70 268.9 174 77.6
RcHm_v2.0_Chr5g0047191 Rosa chinensis HOM05D005031 ORTHO05D006098 3.7e-70 268.5 174 75.9
Phvul.010G125500 Phaseolus vulgaris HOM05D005031 ORTHO05D006098 8.2e-70 267.3 174 74.1
Lj6g0018969 Lotus japonicus HOM05D005031 ORTHO05D006098 1.1e-69 266.9 174 75.9
Phvul.003G152700 Phaseolus vulgaris HOM05D005031 ORTHO05D006098 1.4e-69 266.5 174 74.1
ATR0580G158 Amborella trichopoda HOM05D005031 ORTHO05D006098 1.8e-69 266.2 174 75.9
Glyma.02G207700 Glycine max HOM05D005031 ORTHO05D006098 1.8e-69 266.2 174 73.6
arahy.Tifrunner.gnm1.ann1.QFVN2V Arachis hypogaea HOM05D005031 ORTHO05D006098 2.4e-69 265.8 174 75.9
EL10Ac7g17961 Beta vulgaris HOM05D005031 ORTHO05D006098 3.1e-69 265.4 174 75.9
CsaV3_2G007780 Cucumis sativus L. HOM05D005031 ORTHO05D006098 4.1e-69 265.0 174 75.9
Glyma.17G070000 Glycine max HOM05D005031 ORTHO05D006098 5.3e-69 264.6 174 73.0
FAN25G2017 Fragaria x ananassa HOM05D005031 ORTHO05D006098 9.0e-69 263.8 174 75.3
Lj4g0007960 Lotus japonicus HOM05D005031 ORTHO05D006098 1.2e-68 263.5 175 73.7
Oeu045637.1 Olea europaea HOM05D005031 ORTHO05D006098 2.0e-68 262.7 174 74.7
COL.COLO4_10074 Corchorus olitorius HOM05D005031 ORTHO05D006098 3.4e-68 261.9 174 74.7
Hund18050 Selenicereus undatus HOM05D005031 ORTHO05D006098 1.0e-67 260.4 174 74.7
BolC1t00834H Brassica oleracea HOM05D005031 ORTHO05D006098 2.2e-67 259.2 151 82.8
Hma1.2p1_2290F.1_g319050 Hydrangea macrophylla HOM05D005031 ORTHO05D006098 2.9e-67 258.8 174 71.3
Oeu031856.2 Olea europaea HOM05D005031 ORTHO05D006098 3.8e-67 258.5 174 72.4
Sabra18G0087000 Salix brachista HOM05D005031 ORTHO05D006098 3.8e-67 258.5 194 68.6
GSVIVG01033204001 Vitis vinifera HOM05D005031 ORTHO05D006098 3.8e-67 258.5 174 74.1
Sed0023985 Sechium edule HOM05D005031 ORTHO05D006098 5.0e-67 258.1 174 74.7
MELO3C004109.2 Cucumis melo HOM05D005031 ORTHO05D006098 8.5e-67 257.3 174 74.1
PGR031G2537 Punica granatum HOM05D005031 ORTHO05D006098 8.5e-67 257.3 174 73.0
Eucgr.H00166 Eucalyptus grandis HOM05D005031 ORTHO05D006098 1.1e-66 256.9 174 71.8
Manes.06G033000 Manihot esculenta HOM05D005031 ORTHO05D006098 1.1e-66 256.9 174 75.3
TWI73G0469 Tripterygium wilfordii HOM05D005031 ORTHO05D006098 4.2e-66 255.0 174 73.0
ClCG11G012690 Citrullus lanatus HOM05D005031 ORTHO05D006098 2.1e-65 252.7 174 73.0
CAN.G1190.6 Capsicum annuum HOM05D005031 ORTHO05D006098 2.7e-65 252.3 174 72.4
CiPaw.06G050600 Carya illinoinensis HOM05D005031 ORTHO05D006098 2.7e-65 252.3 174 71.3
SalBow1G8617 Salvia bowleyana HOM05D005031 ORTHO05D006098 2.7e-65 252.3 174 73.6
Peaxi162Scf00038g00324 Petunia axillaris HOM05D005031 ORTHO05D006098 2.3e-64 249.2 174 73.0
arahy.Tifrunner.gnm1.ann1.0TL0BP Arachis hypogaea HOM05D005031 ORTHO05D006098 6.7e-64 247.7 198 65.7
Lalb_Chr07g0180011 Lupinus albus HOM05D005031 ORTHO05D006098 6.7e-64 247.7 175 70.9
TAR636G0261 Trochodendron aralioides HOM05D005031 ORTHO05D006098 6.7e-64 247.7 171 71.9
PSO017G4787 Papaver somniferum HOM05D005031 ORTHO05D006098 1.1e-63 246.9 174 70.7
Hma1.2p1_1493F.1_g286836 Hydrangea macrophylla HOM05D005031 ORTHO05D006098 1.5e-63 246.5 174 69.5
PSO478G0084 Papaver somniferum HOM05D005031 ORTHO05D006098 2.5e-63 245.7 174 70.1
HPP92_025776 Vanilla planifolia HOM05D005031 ORTHO05D006098 5.7e-63 244.6 174 69.0
CDE05G2574 Ceratophyllum demersum HOM05D005031 ORTHO05D006098 1.7e-62 243.0 174 69.0
PSO675G4517 Papaver somniferum HOM05D005031 ORTHO05D006098 8.2e-62 240.7 174 69.0
Atru.chr12.1707 Acer truncatum HOM05D005031 ORTHO05D006098 1.1e-61 240.4 174 70.1
Migut.K00291 Erythranthe guttata HOM05D005031 ORTHO05D006098 1.1e-61 240.4 174 70.7
Nitab4.5_0001036g0100 Nicotiana tabacum HOM05D005031 ORTHO05D006098 9.1e-61 237.3 174 70.1
Aqoxy5G00990 Aquilegia oxysepala HOM05D005031 ORTHO05D006098 2.0e-60 236.1 171 67.8
Zm00001eb186920 Zea mays HOM05D005031 ORTHO05D006098 3.4e-60 235.3 175 69.1
Nitab4.5_0002545g0040 Nicotiana tabacum HOM05D005031 ORTHO05D006098 7.7e-60 234.2 174 69.0
Solyc07g006150.3 Solanum lycopersicum HOM05D005031 ORTHO05D006098 7.7e-60 234.2 174 69.5
Sopen07g002260 Solanum pennellii HOM05D005031 ORTHO05D006098 7.7e-60 234.2 174 69.5
PGSC0003DMG400011218 Solanum tuberosum HOM05D005031 ORTHO05D006098 7.7e-60 234.2 174 69.0
SGA_v2.0_scaffold12G06032 Striga asiatica HOM05D005031 ORTHO05D006098 1.0e-59 233.8 174 69.0
TWI23G1034 Tripterygium wilfordii HOM05D005031 ORTHO05D006098 1.7e-59 233.0 158 72.2
Atru.chr12.1715 Acer truncatum HOM05D005031 ORTHO05D006098 1.4e-58 229.9 143 76.9
Hma1.2p1_2438F.1_g322190 Hydrangea macrophylla HOM05D005031 ORTHO05D006098 1.9e-58 229.6 156 70.5
HanXRQChr10g0307831 Helianthus annuus HOM05D005031 ORTHO05D006098 3.2e-58 228.8 174 66.7
QL01p011713 Quercus lobata HOM05D005031 ORTHO05D006098 1.2e-57 226.9 173 65.9
MBI14_g16418_MAGBIO Magnolia biondii HOM05D005031 ORTHO05D006098 1.0e-56 223.8 145 74.5
ECA234G3840 Erigeron canadensis HOM05D005031 ORTHO05D006098 1.4e-56 223.4 174 64.4
MSTRG.10716 Avicennia marina HOM05D005031 ORTHO05D006098 3.3e-55 218.8 174 63.8
vmacro01000 Vaccinium macrocarpon HOM05D005031 ORTHO05D006098 3.3e-55 218.8 174 64.9
Sed0023066 Sechium edule HOM05D005031 ORTHO05D006098 9.1e-53 210.7 146 71.9
Cc06_g14310 Coffea canephora HOM05D005031 ORTHO05D006098 2.0e-52 209.5 174 63.2
Actinidia38656 Actinidia chinensis HOM05D005031 ORTHO05D006098 2.9e-51 205.7 174 60.9
Actinidia33308 Actinidia chinensis HOM05D005031 ORTHO05D006098 8.5e-51 204.1 174 62.1
Psat0s2826g0160 Pisum sativum HOM05D005031 ORTHO05D006098 8.5e-51 204.1 122 78.7
CSS0024126 Camellia sinensis var. sinensis HOM05D005031 ORTHO05D006098 7.2e-50 201.1 171 60.8
CSS0012616 Camellia sinensis var. sinensis HOM05D005031 ORTHO05D006098 9.4e-50 200.7 171 60.8
Dinv41325 Davidia involucrata HOM05D005031 ORTHO05D006098 1.6e-49 199.9 174 59.2
Sc05g0001840 Simmondsia chinensis HOM05D005031 ORTHO05D006098 8.0e-49 197.6 122 76.2
Hma1.2p1_2725F.1_g327560 Hydrangea macrophylla HOM05D005031 ORTHO05D006098 1.0e-48 197.2 122 75.4
Lsat_1_v5_gn_5_88201 Lactuca sativa HOM05D005031 ORTHO05D006098 1.4e-48 196.8 176 61.4
Os02g0666800 Oryza sativa ssp. japonica HOM05D005031 ORTHO05D006098 4.4e-47 191.8 175 56.6
AagrBONN_evm.TU.Sc2ySwM_368.3216 Anthoceros agrestis HOM05D005031 ORTHO05D006098 4.1e-45 185.3 171 57.9
AUR62001168 Chenopodium quinoa HOM05D005031 ORTHO05D006098 4.1e-45 185.3 182 56.6
Rhsim03G0260600 Rhododendron simsii HOM05D005031 ORTHO05D006098 2.0e-44 183.0 239 45.6
Rhsim03G0261100 Rhododendron simsii HOM05D005031 ORTHO05D006098 8.0e-41 171.0 145 59.3
SMO164G0234 Selaginella moellendorffii HOM05D005031 ORTHO05D006098 3.0e-40 169.1 174 52.3
Mapoly0003s0226 Marchantia polymorpha HOM05D005031 ORTHO05D006098 8.8e-40 167.5 174 51.1
Pp3c11_17250 Physcomitrium patens HOM05D005031 ORTHO05D006098 2.0e-39 166.4 173 53.2
Haze_21256 Corylus avellana HOM05D005031 ORTHO05D006098 1.6e-36 156.8 95 75.8
AUR62022155 Chenopodium quinoa HOM05D005031 ORTHO05D006098 3.5e-36 155.6 94 76.6
Ah.08g218880 Amaranthus hybridus HOM05D005031 ORTHO05D006098 5.9e-36 154.8 94 75.5
CBR_g3690 Chara braunii HOM05D005031 ORTHO05D006098 3.8e-35 152.1 173 44.5
Cpa.g.sc743.3 Carica papaya HOM05D005031 ORTHO05D006098 8.5e-35 151.0 93 76.3
BcaB08g34788 Brassica carinata HOM05D005031 ORTHO05D006098 1.2e-33 147.1 127 63.8
BcaNung01743 Brassica carinata HOM05D005031 ORTHO05D006098 2.1e-33 146.4 119 63.0
BcaB04g19089 Brassica carinata HOM05D005031 ORTHO05D006098 7.7e-28 127.9 121 58.7
CARHR238390 Cardamine hirsuta HOM05D005031 ORTHO05D006098 1.7e-27 126.7 96 62.5
Cre02.g096850 Chlamydomonas reinhardtii HOM05D005031 ORTHO05D006098 3.7e-22 109.0 168 36.9
Lj7A465G52 Lonicera japonica HOM05D005031 ORTHO05D006098 1.2e-20 104.0 80 58.8
unitig_62.g23488 Utricularia gibba HOM05D005031 ORTHO05D006098 5.0e-19 98.6 85 58.8
MELO3C020438.2 Cucumis melo HOM05D005031 ORTHO05D006098 3.3e-18 95.9 55 76.4
MELO3C010414.2 Cucumis melo HOM05D005031 ORTHO05D006098 1.4e-16 90.5 53 77.4
MELO3C032992.2 Cucumis melo HOM05D005031 ORTHO05D006098 1.7e-14 83.6 48 77.1
PRCOL_00004780 Prasinoderma coloniale HOM05D005031 ORTHO05D006098 4.9e-14 82.0 176 29.0
CARHR184590 Cardamine hirsuta HOM05D005031 ORTHO05D006098 2.3e-11 73.2 48 75.0
Rhsim03G0261000 Rhododendron simsii HOM05D005031 ORTHO05D006098 3.0e-11 72.8 94 44.7
MELO3C033057.2 Cucumis melo HOM05D005031 ORTHO05D006098 6.6e-11 71.6 38 81.6
MCO15G043 Micromonas commoda HOM05D005031 ORTHO05D006098 1.9e-10 70.1 174 29.9
Sp4g02835 Schrenkiella parvula HOM05D005031 ORTHO05D006098 1.1e-08 64.3 172 32.0


User provided reference genes

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