Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL4G13370 Arabidopsis lyrata HOM05D000988 ORTHO05D000724 1.9e-96 355.9 187 100.0
AT2G23430 Arabidopsis thaliana HOM05D000988 ORTHO05D000724 3.7e-76 288.5 192 84.4
CARHR293050 Cardamine hirsuta HOM05D000988 ORTHO05D000724 1.4e-59 233.4 187 71.7
Sp4g02420 Schrenkiella parvula HOM05D000988 ORTHO05D000724 1.7e-49 199.9 193 65.3
Thhalv10000332m.g Eutrema salsugineum HOM05D000988 ORTHO05D000724 1.8e-46 189.9 199 62.3
Aa31LG7G13560 Aethionema arabicum HOM05D000988 ORTHO05D000724 2.5e-40 169.5 225 54.7
BolC8t51560H Brassica oleracea HOM05D000988 ORTHO05D000724 9.2e-35 151.0 189 57.1
BcaC07g40986 Brassica carinata HOM05D000988 ORTHO05D000724 5.9e-34 148.3 188 58.0
A09p56920 Brassica napus HOM05D000988 ORTHO05D000724 5.9e-34 148.3 188 56.4
BraA09t41084Z Brassica rapa HOM05D000988 ORTHO05D000724 5.9e-34 148.3 188 56.4
C08p39880 Brassica napus HOM05D000988 ORTHO05D000724 4.0e-30 135.6 185 53.5
Carub.0004s0263 Capsella rubella HOM05D000988 ORTHO05D000724 2.5e-24 116.3 89 68.5
Carub.0004s0264 Capsella rubella HOM05D000988 ORTHO05D000724 1.9e-19 100.1 72 79.2
THA.LOC104819843 Tarenaya hassleriana HOM05D000988 ORTHO05D000724 2.3e-17 93.2 193 42.0
CSS0047121 Camellia sinensis var. sinensis HOM05D000988 ORTHO05D000724 2.2e-12 76.6 179 34.6
Ciclev10026517m.g Citrus clementina HOM05D000988 ORTHO05D000724 2.9e-12 76.3 181 35.4
Cpa.g.sc55.167 Carica papaya HOM05D000988 ORTHO05D000724 6.4e-12 75.1 198 34.8
Oeu050777.1 Olea europaea HOM05D000988 ORTHO05D000724 8.4e-12 74.7 199 32.2
Atru.chr3.348 Acer truncatum HOM05D000988 ORTHO05D000724 1.4e-11 73.9 167 35.9
Glyma.17G175700 Glycine max HOM05D000988 ORTHO05D000724 9.2e-11 71.2 91 48.4
Thecc.01G054100 Theobroma cacao HOM05D000988 ORTHO05D000724 9.2e-11 71.2 180 36.1
CSS0048797 Camellia sinensis var. sinensis HOM05D000988 ORTHO05D000724 1.6e-10 70.5 207 30.4
Dinv29977 Davidia involucrata HOM05D000988 ORTHO05D000724 2.7e-10 69.7 166 31.3
Phvul.003G244700 Phaseolus vulgaris HOM05D000988 ORTHO05D000724 2.7e-10 69.7 181 34.3
Gohir.A11G191100 Gossypium hirsutum HOM05D000988 ORTHO05D000724 3.5e-10 69.3 184 34.2
TWI09G0765 Tripterygium wilfordii HOM05D000988 ORTHO05D000724 3.5e-10 69.3 150 34.0
GSVIVG01022145001 Vitis vinifera HOM05D000988 ORTHO05D000724 3.5e-10 69.3 208 32.2
Manes.12G103100 Manihot esculenta HOM05D000988 ORTHO05D000724 6.0e-10 68.6 200 31.0
Sopen02g035320 Solanum pennellii HOM05D000988 ORTHO05D000724 6.0e-10 68.6 151 34.4
Cc07_g05910 Coffea canephora HOM05D000988 ORTHO05D000724 7.8e-10 68.2 192 33.3
MSTRG.15394 Avicennia marina HOM05D000988 ORTHO05D000724 1.3e-09 67.4 186 30.1
Gohir.D11G197900 Gossypium hirsutum HOM05D000988 ORTHO05D000724 1.3e-09 67.4 182 33.5
Actinidia36500 Actinidia chinensis HOM05D000988 ORTHO05D000724 2.3e-09 66.6 155 31.6
CANSAT01G1117 Cannabis sativa HOM05D000988 ORTHO05D000724 2.3e-09 66.6 137 34.3
Manes.13G127100 Manihot esculenta HOM05D000988 ORTHO05D000724 2.3e-09 66.6 202 31.2
Gohir.A12G070500 Gossypium hirsutum HOM05D000988 ORTHO05D000724 3.0e-09 66.2 180 32.2
Gohir.D12G088300 Gossypium hirsutum HOM05D000988 ORTHO05D000724 3.0e-09 66.2 193 31.1
Gorai.007G211800 Gossypium raimondii HOM05D000988 ORTHO05D000724 3.0e-09 66.2 183 35.0
Solyc02g090680.3 Solanum lycopersicum HOM05D000988 ORTHO05D000724 3.9e-09 65.9 186 31.7
Gorai.008G074800 Gossypium raimondii HOM05D000988 ORTHO05D000724 5.1e-09 65.5 179 31.8
Dinv39865 Davidia involucrata HOM05D000988 ORTHO05D000724 6.6e-09 65.1 195 30.3
Lj4g0023420 Lotus japonicus HOM05D000988 ORTHO05D000724 6.6e-09 65.1 152 34.2
Psat2g166040 Pisum sativum HOM05D000988 ORTHO05D000724 6.6e-09 65.1 162 36.4
SalBow5G1305 Salvia bowleyana HOM05D000988 ORTHO05D000724 6.6e-09 65.1 190 30.5
SalBow5G4663 Salvia bowleyana HOM05D000988 ORTHO05D000724 6.6e-09 65.1 190 30.5
Duzib147G1455 Durio zibethinus HOM05D000988 ORTHO05D000724 8.6e-09 64.7 180 35.0
Ah.02g124190 Amaranthus hybridus HOM05D000988 ORTHO05D000724 1.9e-08 63.5 61 50.8
Ca_24777_v3 Cicer arietinum L. HOM05D000988 ORTHO05D000724 1.9e-08 63.5 105 41.0
ClCG02G012780 Citrullus lanatus HOM05D000988 ORTHO05D000724 1.9e-08 63.5 186 29.0
Nitab4.5_0001034g0100 Nicotiana tabacum HOM05D000988 ORTHO05D000724 1.9e-08 63.5 151 37.7
TWI73G0652 Tripterygium wilfordii HOM05D000988 ORTHO05D000724 1.9e-08 63.5 150 32.0
DCAR_025727 Daucus carota HOM05D000988 ORTHO05D000724 2.5e-08 63.2 151 35.1
Lalb_Chr09g0323111 Lupinus albus HOM05D000988 ORTHO05D000724 2.5e-08 63.2 166 31.9
Nitab4.5_0000033g0440 Nicotiana tabacum HOM05D000988 ORTHO05D000724 2.5e-08 63.2 112 38.4
Sp5g11590 Schrenkiella parvula HOM05D010645 ORTHO05D000724 2.5e-08 63.2 186 34.4
Hund16333 Selenicereus undatus HOM05D000988 ORTHO05D000724 2.5e-08 63.2 47 59.6
FAN19G1762 Fragaria x ananassa HOM05D000988 ORTHO05D000724 3.3e-08 62.8 165 31.5
Gohir.D10G096200 Gossypium hirsutum HOM05D000988 ORTHO05D000724 3.3e-08 62.8 46 58.7
Gorai.011G105400 Gossypium raimondii HOM05D000988 ORTHO05D000724 3.3e-08 62.8 46 58.7
Duzib187G2011 Durio zibethinus HOM05D000988 ORTHO05D000724 4.3e-08 62.4 179 31.8
Medtr5g017600 Medicago truncatula HOM05D000988 ORTHO05D000724 4.3e-08 62.4 160 34.4
unitig_748.g8605 Utricularia gibba HOM05D000988 ORTHO05D000724 4.3e-08 62.4 175 30.9
Prupe.7G135000 Prunus persica HOM05D000988 ORTHO05D000724 5.6e-08 62.0 187 28.3
MSTRG.3421 Avicennia marina HOM05D000988 ORTHO05D000724 7.3e-08 61.6 201 28.9
CSS0017394 Camellia sinensis var. sinensis HOM05D000988 ORTHO05D000724 7.3e-08 61.6 225 31.6
Migut.K00762 Erythranthe guttata HOM05D000988 ORTHO05D000724 7.3e-08 61.6 196 28.6
TAR625G0816 Trochodendron aralioides HOM05D000988 ORTHO05D000724 7.3e-08 61.6 197 30.5
arahy.Tifrunner.gnm1.ann1.2BG7C4 Arachis hypogaea HOM05D000988 ORTHO05D000724 9.6e-08 61.2 45 62.2
arahy.Tifrunner.gnm1.ann1.U4YTZL Arachis hypogaea HOM05D000988 ORTHO05D000724 9.6e-08 61.2 45 62.2
FAN23G0955 Fragaria x ananassa HOM05D000988 ORTHO05D000724 9.6e-08 61.2 162 32.1
COL.COLO4_11396 Corchorus olitorius HOM05D000988 ORTHO05D000724 1.2e-07 60.8 138 35.5
RcHm_v2.0_Chr2g0105111 Rosa chinensis HOM05D000988 ORTHO05D000724 1.2e-07 60.8 161 31.7
TPR.G21287 Trifolium pratense HOM05D000988 ORTHO05D000724 1.2e-07 60.8 205 29.3
VMungo1215G1251 Vigna mungo HOM05D000988 ORTHO05D000724 1.2e-07 60.8 147 36.7
FvH4_1g15820 Fragaria vesca HOM05D000988 ORTHO05D000724 1.6e-07 60.5 165 31.5
PGSC0003DMG400015770 Solanum tuberosum HOM05D000988 ORTHO05D000724 1.6e-07 60.5 203 31.5
Ca_19505_v3 Cicer arietinum L. HOM05D000988 ORTHO05D000724 2.1e-07 60.1 46 54.3
FAN15G2453 Fragaria x ananassa HOM05D000988 ORTHO05D000724 2.1e-07 60.1 74 47.3
MBI06_g24646_MAGBIO Magnolia biondii HOM05D000988 ORTHO05D000724 2.1e-07 60.1 100 41.0
PGR102G1661 Punica granatum HOM05D000988 ORTHO05D000724 2.1e-07 60.1 168 33.3
Rhsim10G0118800 Rhododendron simsii HOM05D000988 ORTHO05D000724 2.1e-07 60.1 181 33.7
Sc03g0001510 Simmondsia chinensis HOM05D000988 ORTHO05D000724 2.1e-07 60.1 195 28.7
FAN26G1516 Fragaria x ananassa HOM05D000988 ORTHO05D000724 2.8e-07 59.7 162 32.1
MD02G1170300 Malus domestica HOM05D000988 ORTHO05D000724 2.8e-07 59.7 208 31.2
PSO170G3547 Papaver somniferum HOM05D000988 ORTHO05D000724 2.8e-07 59.7 49 57.1
Sed0015277 Sechium edule HOM05D000988 ORTHO05D000724 2.8e-07 59.7 139 33.1
unitig_32.g11764 Utricularia gibba HOM05D000988 ORTHO05D000724 2.8e-07 59.7 157 30.6
VMungo0251G3785 Vigna mungo HOM05D000988 ORTHO05D000724 2.8e-07 59.7 173 33.5
arahy.Tifrunner.gnm1.ann1.C2Y005 Arachis hypogaea HOM05D000988 ORTHO05D000724 3.6e-07 59.3 111 38.7
EL10Ac6g15762 Beta vulgaris HOM05D000988 ORTHO05D000724 3.6e-07 59.3 55 54.5
AUR62003862 Chenopodium quinoa HOM05D000988 ORTHO05D000724 3.6e-07 59.3 57 49.1
Lalb_Chr16g0378471 Lupinus albus HOM05D000988 ORTHO05D000724 3.6e-07 59.3 98 37.8
Sabra07G0037500 Salix brachista HOM05D000988 ORTHO05D000724 3.6e-07 59.3 130 34.6
Haze_15419 Corylus avellana HOM05D000988 ORTHO05D000724 4.7e-07 58.9 52 50.0
Nn1g05833 Nelumbo nucifera HOM05D000988 ORTHO05D000724 4.7e-07 58.9 201 31.3
CiPaw.02G008800 Carya illinoinensis HOM05D000988 ORTHO05D000724 6.2e-07 58.5 134 36.6
DCAR_024480 Daucus carota HOM05D000988 ORTHO05D000724 6.2e-07 58.5 87 40.2
Glyma.01G185400 Glycine max HOM05D000988 ORTHO05D000724 6.2e-07 58.5 97 40.2
Phvul.002G019500 Phaseolus vulgaris HOM05D000988 ORTHO05D000724 6.2e-07 58.5 97 39.2
arahy.Tifrunner.gnm1.ann1.CAW15G Arachis hypogaea HOM05D000988 ORTHO05D000724 8.1e-07 58.2 112 38.4
Oeu021555.1 Olea europaea HOM05D000988 ORTHO05D000724 8.1e-07 58.2 160 31.2
Peaxi162Scf00450g00739 Petunia axillaris HOM05D000988 ORTHO05D000724 8.1e-07 58.2 100 37.0
Cfa004004 Carpinus fangiana HOM05D000988 ORTHO05D000724 1.1e-06 57.8 132 33.3
Thhalv10010715m.g Eutrema salsugineum HOM05D010645 ORTHO05D000724 1.1e-06 57.8 186 35.5
FAN27G3463 Fragaria x ananassa HOM05D000988 ORTHO05D000724 1.1e-06 57.8 74 47.3
Manes.07G081800 Manihot esculenta HOM05D000988 ORTHO05D000724 1.1e-06 57.8 45 53.3
Nitab4.5_0001064g0030 Nicotiana tabacum HOM05D000988 ORTHO05D000724 1.1e-06 57.8 118 33.9
QL06p041825 Quercus lobata HOM05D000988 ORTHO05D000724 1.1e-06 57.8 148 33.8
THA.LOC104814139 Tarenaya hassleriana HOM05D000988 ORTHO05D000724 1.1e-06 57.8 59 45.8
HanXRQChr03g0082701 Helianthus annuus HOM05D000988 ORTHO05D000724 1.4e-06 57.4 80 40.0
Oeu004831.1 Olea europaea HOM05D000988 ORTHO05D000724 1.4e-06 57.4 194 30.4
Hund13559 Selenicereus undatus HOM05D000988 ORTHO05D000724 1.4e-06 57.4 91 41.8
vmacro05330 Vaccinium macrocarpon HOM05D000988 ORTHO05D000724 1.4e-06 57.4 199 32.7
BraA03t13894Z Brassica rapa HOM05D010645 ORTHO05D000724 1.8e-06 57.0 150 37.3
Cc02_g18650 Coffea canephora HOM05D000988 ORTHO05D000724 1.8e-06 57.0 50 54.0
FAN20G2007 Fragaria x ananassa HOM05D000988 ORTHO05D000724 1.8e-06 57.0 88 40.9
Solyc01g108610.3 Solanum lycopersicum HOM05D000988 ORTHO05D000724 1.8e-06 57.0 49 51.0
Sopen01g050830 Solanum pennellii HOM05D000988 ORTHO05D000724 1.8e-06 57.0 49 51.0
CARHR160140 Cardamine hirsuta HOM05D010645 ORTHO05D000724 2.4e-06 56.6 65 47.7
RcHm_v2.0_Chr6g0258231 Rosa chinensis HOM05D000988 ORTHO05D000724 2.4e-06 56.6 56 48.2
Actinidia00450 Actinidia chinensis HOM05D000988 ORTHO05D000724 3.1e-06 56.2 211 28.0
BraA06t23564Z Brassica rapa HOM05D000988 ORTHO05D000724 3.1e-06 56.2 59 45.8
FAN28G2662 Fragaria x ananassa HOM05D000988 ORTHO05D000724 3.1e-06 56.2 162 29.6
Ah.15g093940 Amaranthus hybridus HOM05D000988 ORTHO05D000724 4.0e-06 55.8 194 26.8
Aqoxy5G01265 Aquilegia oxysepala HOM05D000988 ORTHO05D000724 4.0e-06 55.8 172 29.1
ECA233G2846 Erigeron canadensis HOM05D000988 ORTHO05D000724 4.0e-06 55.8 50 54.0
THA.LOC104826988 Tarenaya hassleriana HOM05D010645 ORTHO05D000724 4.0e-06 55.8 164 33.5
TAR381G0922 Trochodendron aralioides HOM05D000988 ORTHO05D000724 4.0e-06 55.8 193 30.6
MSTRG.23759 Avicennia marina HOM05D000988 ORTHO05D000724 5.2e-06 55.5 200 28.5
FAN24G0804 Fragaria x ananassa HOM05D000988 ORTHO05D000724 5.2e-06 55.5 74 44.6
Lalb_Chr16g0384631 Lupinus albus HOM05D000988 ORTHO05D000724 5.2e-06 55.5 56 48.2
Nitab4.5_0001899g0120 Nicotiana tabacum HOM05D000988 ORTHO05D000724 5.2e-06 55.5 49 49.0
Potri.007G042300 Populus trichocarpa HOM05D000988 ORTHO05D000724 5.2e-06 55.5 199 29.6
PGSC0003DMG400025821 Solanum tuberosum HOM05D000988 ORTHO05D000724 5.2e-06 55.5 49 51.0
BcaC06g33308 Brassica carinata HOM05D010645 ORTHO05D000724 6.8e-06 55.1 171 33.3
C07p45820 Brassica napus HOM05D010645 ORTHO05D000724 6.8e-06 55.1 171 33.3
BolC7t45103H Brassica oleracea HOM05D010645 ORTHO05D000724 6.8e-06 55.1 171 33.3
CiPaw.05G052300 Carya illinoinensis HOM05D000988 ORTHO05D000724 6.8e-06 55.1 91 36.3
FvH4_2g06360 Fragaria vesca HOM05D000988 ORTHO05D000724 6.8e-06 55.1 56 48.2
Eucgr.H02008 Eucalyptus grandis HOM05D000988 ORTHO05D000724 8.9e-06 54.7 157 30.6
Glyma.02G133700 Glycine max HOM05D000988 ORTHO05D000724 8.9e-06 54.7 65 46.2
HPP92_004079 Vanilla planifolia HOM05D000988 ORTHO05D000724 8.9e-06 54.7 194 29.4


User provided reference genes

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