Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL4G13130 Arabidopsis lyrata HOM05D007709 ORTHO05D009577 1.5e-40 169.1 86 100.0
AT2G23240 Arabidopsis thaliana HOM05D007709 ORTHO05D009577 1.3e-39 166.0 86 97.7
Carub.0004s0246 Capsella rubella HOM05D007709 ORTHO05D009577 8.8e-33 143.3 87 86.2
AT2G42000 Arabidopsis thaliana HOM05D007709 ORTHO05D009577 1.4e-30 136.0 86 82.6
Thhalv10000588m.g Eutrema salsugineum HOM05D007709 ORTHO05D009577 2.9e-28 128.3 70 81.4
AL4G40360 Arabidopsis lyrata HOM05D007709 ORTHO05D009577 5.0e-28 127.5 69 84.1
BcaC01g04855 Brassica carinata HOM05D007709 ORTHO05D009577 9.4e-27 123.2 71 81.7
C03p33100 Brassica napus HOM05D007709 ORTHO05D009577 9.4e-27 123.2 71 81.7
BolC3t15636H Brassica oleracea HOM05D007709 ORTHO05D009577 9.4e-27 123.2 71 81.7
A03p27450 Brassica napus HOM05D007709 ORTHO05D009577 8.0e-26 120.2 65 83.1
BraA03t11957Z Brassica rapa HOM05D007709 ORTHO05D009577 8.0e-26 120.2 65 83.1
Sp4g00020 Schrenkiella parvula HOM05D007709 ORTHO05D009577 1.0e-25 119.8 71 78.9
BcaB01g02955 Brassica carinata HOM05D007709 ORTHO05D009577 1.4e-25 119.4 71 78.9
Carub.0004s2433 Capsella rubella HOM05D007709 ORTHO05D009577 8.8e-25 116.7 70 78.6
CARHR292840 Cardamine hirsuta HOM05D007709 ORTHO05D009577 5.7e-24 114.0 65 78.5
THA.LOC104807798 Tarenaya hassleriana HOM05D007709 ORTHO05D009577 2.9e-20 101.7 87 69.0
CAN.G1725.3 Capsicum annuum HOM05D007709 ORTHO05D009577 1.6e-18 95.9 63 65.1
Migut.N01357 Erythranthe guttata HOM05D007709 ORTHO05D009577 2.1e-18 95.5 84 58.3
Peaxi162Scf00362g00133 Petunia axillaris HOM05D007709 ORTHO05D009577 4.7e-18 94.4 77 54.5
Prupe.8G179200 Prunus persica HOM05D007709 ORTHO05D009577 8.0e-18 93.6 70 60.0
Aqoxy6G01622 Aquilegia oxysepala HOM05D007709 ORTHO05D009577 1.8e-17 92.4 71 57.7
Ah.01g017550 Amaranthus hybridus HOM05D007709 ORTHO05D009577 5.2e-17 90.9 87 64.4
COL.COLO4_34305 Corchorus olitorius HOM05D007709 ORTHO05D009577 1.2e-16 89.7 62 66.1
Sc14g0002460 Simmondsia chinensis HOM05D007709 ORTHO05D009577 1.5e-16 89.4 64 62.5
Cfa005362 Carpinus fangiana HOM05D007709 ORTHO05D009577 3.4e-16 88.2 65 60.0
Haze_02011 Corylus avellana HOM05D007709 ORTHO05D009577 7.5e-16 87.0 87 54.0
Nn5g30992 Nelumbo nucifera HOM05D007709 ORTHO05D009577 2.2e-15 85.5 80 47.5
PGR142G3111 Punica granatum HOM05D007709 ORTHO05D009577 2.2e-15 85.5 64 57.8
Manes.11G110300 Manihot esculenta HOM05D007709 ORTHO05D009577 3.7e-15 84.7 68 61.8
Eucgr.I01530 Eucalyptus grandis HOM05D007709 ORTHO05D009577 4.8e-15 84.3 57 57.9
QL03p016617 Quercus lobata HOM05D007709 ORTHO05D009577 6.3e-15 84.0 71 57.7
Cfa005363 Carpinus fangiana HOM05D007709 ORTHO05D009577 8.3e-15 83.6 69 55.1
QL03p016612 Quercus lobata HOM05D007709 ORTHO05D009577 8.3e-15 83.6 70 58.6
QL11p056189 Quercus lobata HOM05D007709 ORTHO05D009577 8.3e-15 83.6 70 58.6
QL11p056219 Quercus lobata HOM05D007709 ORTHO05D009577 8.3e-15 83.6 70 58.6
arahy.Tifrunner.gnm1.ann1.0QS5M4 Arachis hypogaea HOM05D007709 ORTHO05D009577 1.1e-14 83.2 63 61.9
arahy.Tifrunner.gnm1.ann1.9G47NZ Arachis hypogaea HOM05D007709 ORTHO05D009577 1.1e-14 83.2 63 61.9
Nitab4.5_0000783g0120 Nicotiana tabacum HOM05D007709 ORTHO05D009577 1.8e-14 82.4 65 58.5
QL11p056180 Quercus lobata HOM05D007709 ORTHO05D009577 1.8e-14 82.4 64 62.5
RcHm_v2.0_Chr6g0280851 Rosa chinensis HOM05D007709 ORTHO05D009577 2.4e-14 82.0 67 59.7
Ciclev10029706m.g Citrus clementina HOM05D007709 ORTHO05D009577 4.1e-14 81.3 62 54.8
HanXRQChr16g0501351 Helianthus annuus HOM05D007709 ORTHO05D009577 7.0e-14 80.5 77 49.4
Atru.chr5.3536 Acer truncatum HOM05D007709 ORTHO05D009577 1.6e-13 79.3 64 59.4
PSO541G6469 Papaver somniferum HOM05D007709 ORTHO05D009577 2.0e-13 79.0 60 60.0
Lj3g0026575 Lotus japonicus HOM05D007709 ORTHO05D009577 2.7e-13 78.6 86 50.0
Thecc.02G145500 Theobroma cacao HOM05D007709 ORTHO05D009577 2.7e-13 78.6 60 60.0
Cc04_g09140 Coffea canephora HOM05D007709 ORTHO05D009577 4.5e-13 77.8 61 57.4
Glyma.18G157800 Glycine max HOM05D007709 ORTHO05D009577 4.5e-13 77.8 90 48.9
TWI31G1411 Tripterygium wilfordii HOM05D007709 ORTHO05D009577 5.9e-13 77.4 69 53.6
CiPaw.05G092600 Carya illinoinensis HOM05D007709 ORTHO05D009577 7.7e-13 77.0 71 52.1
Os10g0542100 Oryza sativa ssp. japonica HOM05D007709 ORTHO05D009577 2.9e-12 75.1 55 54.5
MELO3C013494.2 Cucumis melo HOM05D007709 ORTHO05D009577 5.0e-12 74.3 62 54.8
Gorai.002G013700 Gossypium raimondii HOM05D007709 ORTHO05D009577 5.0e-12 74.3 54 55.6
DCAR_026620 Daucus carota HOM05D007709 ORTHO05D009577 6.6e-12 73.9 85 50.6
CSS0014347 Camellia sinensis var. sinensis HOM05D007709 ORTHO05D009577 8.6e-12 73.6 67 53.7
Cpa.g.sc60.30 Carica papaya HOM05D007709 ORTHO05D009577 8.6e-12 73.6 87 55.2
Gohir.A04G112024 Gossypium hirsutum HOM05D007709 ORTHO05D009577 8.6e-12 73.6 45 68.9
Gohir.D04G152500 Gossypium hirsutum HOM05D007709 ORTHO05D009577 8.6e-12 73.6 45 68.9
Gorai.012G139300 Gossypium raimondii HOM05D007709 ORTHO05D009577 8.6e-12 73.6 45 68.9
QL03p016621 Quercus lobata HOM05D007709 ORTHO05D009577 1.1e-11 73.2 64 51.6
QL11p056199 Quercus lobata HOM05D007709 ORTHO05D009577 1.1e-11 73.2 64 51.6
MD05G1135300 Malus domestica HOM05D007709 ORTHO05D009577 1.5e-11 72.8 88 56.8
Sed0006301 Sechium edule HOM05D007709 ORTHO05D009577 1.9e-11 72.4 66 51.5
DCAR_026621 Daucus carota HOM05D000628 ORTHO05D009577 3.3e-11 71.6 57 56.1
Rhsim05G0047200 Rhododendron simsii HOM05D007709 ORTHO05D009577 4.2e-11 71.2 83 44.6
HPP92_022159 Vanilla planifolia HOM05D007709 ORTHO05D009577 1.2e-10 69.7 73 45.2
Haze_22002 Corylus avellana HOM05D022555 ORTHO05D009577 2.1e-10 68.9 61 55.7
Medtr8g012330 Medicago truncatula HOM05D001671 ORTHO05D001844 2.1e-10 68.9 62 53.2
Thecc.02G145600 Theobroma cacao HOM05D007709 ORTHO05D009577 2.1e-10 68.9 52 59.6
CANSAT25G2121 Cannabis sativa HOM05D007709 ORTHO05D009577 2.8e-10 68.6 70 47.1
TPR.G29157 Trifolium pratense HOM05D007709 ORTHO05D009577 6.1e-10 67.4 91 47.3
Psat3g150320 Pisum sativum HOM05D007709 ORTHO05D009577 1.8e-09 65.9 57 54.4
Gohir.D01G011700 Gossypium hirsutum HOM05D007709 ORTHO05D009577 2.3e-09 65.5 48 56.2
CSS0015820 Camellia sinensis var. sinensis HOM05D007709 ORTHO05D009577 1.2e-08 63.2 67 49.3
Sopen01g054290 Solanum pennellii HOM05D007709 ORTHO05D009577 1.5e-08 62.8 55 52.7
CSS0018079 Camellia sinensis var. sinensis HOM05D007709 ORTHO05D009577 2.0e-08 62.4 77 41.6
CSS0032875 Camellia sinensis var. sinensis HOM05D007709 ORTHO05D009577 2.0e-08 62.4 77 41.6
Potri.009G167700 Populus trichocarpa HOM05D007709 ORTHO05D009577 2.0e-08 62.4 70 48.6
Lalb_Chr07g0194411 Lupinus albus HOM05D007709 ORTHO05D009577 1.3e-07 59.7 63 46.0
Eucgr.G01861 Eucalyptus grandis HOM05D007709 ORTHO05D009577 4.9e-07 57.8 47 53.2
FAN27G0823 Fragaria x ananassa HOM05D007709 ORTHO05D009577 1.8e-06 55.8 57 49.1
FAN15G1429 Fragaria x ananassa HOM05D007709 ORTHO05D009577 5.4e-06 54.3 77 44.2
SMO358G0048 Selaginella moellendorffii HOM05D007709 ORTHO05D009577 5.4e-06 54.3 49 44.9
SalBow5G1409 Salvia bowleyana HOM05D007709 ORTHO05D009577 7.0e-06 53.9 57 43.9
SalBow5G2601 Salvia bowleyana HOM05D007709 ORTHO05D009577 7.0e-06 53.9 57 43.9
ClCG02G010380 Citrullus lanatus HOM05D007709 ORTHO05D009577 9.2e-06 53.5 64 42.2
FAN24G0243 Fragaria x ananassa HOM05D007709 ORTHO05D009577 9.2e-06 53.5 67 46.3


User provided reference genes

Program Settings