Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL4G12960 Arabidopsis lyrata HOM05D013772 ORTHO05D006334 1.2e-36 156.0 80 100.0
AT2G23120 Arabidopsis thaliana HOM05D013772 ORTHO05D006334 5.0e-30 134.0 84 86.9
Carub.0004s0233 Capsella rubella HOM05D013772 ORTHO05D006334 1.8e-27 125.6 92 77.2
CARHR114390 Cardamine hirsuta HOM05D013772 ORTHO05D006334 5.0e-22 107.5 81 75.3
BcaC07g41006 Brassica carinata HOM05D013772 ORTHO05D006334 9.7e-18 93.2 85 68.2
C08p40100 Brassica napus HOM05D013772 ORTHO05D006334 9.7e-18 93.2 85 68.2
BolC8t51580H Brassica oleracea HOM05D013772 ORTHO05D006334 9.7e-18 93.2 85 68.2
A09p57080 Brassica napus HOM05D013772 ORTHO05D006334 1.3e-17 92.8 85 68.2
BraA09t41100Z Brassica rapa HOM05D013772 ORTHO05D006334 1.3e-17 92.8 85 68.2
Thhalv10000405m.g Eutrema salsugineum HOM05D013772 ORTHO05D006334 3.1e-16 88.2 87 65.5
Sp4g02160 Schrenkiella parvula HOM05D013772 ORTHO05D006334 1.6e-15 85.9 88 64.8
AT2G23110 Arabidopsis thaliana HOM05D005680 ORTHO05D006334 3.2e-13 78.2 67 58.2
Carub.0004s0232 Capsella rubella HOM05D005680 ORTHO05D006334 3.0e-11 71.6 66 57.6
Sp4g02150 Schrenkiella parvula HOM05D005680 ORTHO05D006334 4.0e-11 71.2 68 60.3
Aa31LG7G13780 Aethionema arabicum HOM05D005680 ORTHO05D006334 3.3e-10 68.2 72 54.2
CARHR114400 Cardamine hirsuta HOM05D005680 ORTHO05D006334 3.3e-10 68.2 66 51.5
Thhalv10000392m.g Eutrema salsugineum HOM05D005680 ORTHO05D006334 3.3e-10 68.2 64 51.6
AUR62003966 Chenopodium quinoa HOM05D005680 ORTHO05D006334 9.7e-10 66.6 72 55.6
arahy.Tifrunner.gnm1.ann1.Y5V9TA Arachis hypogaea HOM05D005680 ORTHO05D006334 1.3e-09 66.2 45 68.9
AUR62038279 Chenopodium quinoa HOM05D005680 ORTHO05D006334 1.7e-09 65.9 72 54.2
THA.LOC104819870 Tarenaya hassleriana HOM05D005680 ORTHO05D006334 3.7e-09 64.7 59 54.2
arahy.Tifrunner.gnm1.ann1.C6RKPL Arachis hypogaea HOM05D005680 ORTHO05D006334 1.8e-08 62.4 42 69.0
Atru.chr3.206 Acer truncatum HOM05D005680 ORTHO05D006334 2.4e-08 62.0 73 49.3
Nn1g04629 Nelumbo nucifera HOM05D005680 ORTHO05D006334 3.1e-08 61.6 63 54.0
TAR628G1700 Trochodendron aralioides HOM05D005680 ORTHO05D006334 3.1e-08 61.6 64 57.8
Aqoxy7G01353 Aquilegia oxysepala HOM05D005680 ORTHO05D006334 4.1e-08 61.2 42 66.7
Sc25g0001410 Simmondsia chinensis HOM05D005680 ORTHO05D006334 9.1e-08 60.1 53 58.5
Ah.03g146390 Amaranthus hybridus HOM05D005680 ORTHO05D006334 1.2e-07 59.7 71 50.7
AT2G33690 Arabidopsis thaliana HOM05D005680 ORTHO05D006334 2.7e-07 58.5 55 56.4
Eucgr.H02273 Eucalyptus grandis HOM05D005680 ORTHO05D006334 3.5e-07 58.2 42 64.3
Sc19g0003710 Simmondsia chinensis HOM05D005680 ORTHO05D006334 3.5e-07 58.2 57 54.4
TAR376G0914 Trochodendron aralioides HOM05D005680 ORTHO05D006334 5.9e-07 57.4 65 53.8
Eucgr.H02278 Eucalyptus grandis HOM05D005680 ORTHO05D006334 7.7e-07 57.0 42 64.3
THA.LOC104806914 Tarenaya hassleriana HOM05D005680 ORTHO05D006334 1.0e-06 56.6 45 62.2
PGR102G2721 Punica granatum HOM05D005680 ORTHO05D006334 1.3e-06 56.2 46 65.2
Aa31LG9G13590 Aethionema arabicum HOM05D005680 ORTHO05D006334 1.7e-06 55.8 66 47.0
EL10Ac6g15662 Beta vulgaris HOM05D005680 ORTHO05D006334 1.7e-06 55.8 66 53.0
Phvul.003G237400 Phaseolus vulgaris HOM05D005680 ORTHO05D006334 1.7e-06 55.8 81 49.4
RcHm_v2.0_Chr2g0107321 Rosa chinensis HOM05D005680 ORTHO05D006334 1.7e-06 55.8 42 61.9
Lj2g0023086 Lotus japonicus HOM05D005680 ORTHO05D006334 2.2e-06 55.5 62 51.6
Psat4g083200 Pisum sativum HOM05D005680 ORTHO05D006334 2.2e-06 55.5 65 47.7
Ca_13933_v3 Cicer arietinum L. HOM05D005680 ORTHO05D006334 3.8e-06 54.7 60 51.7
Aqoxy507s001 Aquilegia oxysepala HOM05D005680 ORTHO05D006334 5.0e-06 54.3 66 50.0
Aqoxy5G00968 Aquilegia oxysepala HOM05D005680 ORTHO05D006334 5.0e-06 54.3 66 50.0
BcaB06g28712 Brassica carinata HOM05D005680 ORTHO05D006334 5.0e-06 54.3 51 54.9
BcaC01g05829 Brassica carinata HOM05D005680 ORTHO05D006334 5.0e-06 54.3 64 50.0
C03p22000 Brassica napus HOM05D005680 ORTHO05D006334 5.0e-06 54.3 64 50.0
Haze_15319 Corylus avellana HOM05D005680 ORTHO05D006334 5.0e-06 54.3 75 48.0
Thhalv10017732m.g Eutrema salsugineum HOM05D005680 ORTHO05D006334 5.0e-06 54.3 64 46.9
Sp4g16030 Schrenkiella parvula HOM05D005680 ORTHO05D006334 5.0e-06 54.3 64 48.4
CARHR127690 Cardamine hirsuta HOM05D005680 ORTHO05D006334 6.5e-06 53.9 57 52.6
MELO3C007608.2 Cucumis melo HOM05D005680 ORTHO05D006334 6.5e-06 53.9 68 50.0
Gohir.D11G205900 Gossypium hirsutum HOM05D005680 ORTHO05D006334 6.5e-06 53.9 43 62.8
Gorai.007G221000 Gossypium raimondii HOM05D005680 ORTHO05D006334 6.5e-06 53.9 43 62.8
Potri.002G006000 Populus trichocarpa HOM05D005680 ORTHO05D006334 6.5e-06 53.9 43 62.8
PGR031G2681 Punica granatum HOM05D005680 ORTHO05D006334 6.5e-06 53.9 45 60.0
TWI09G1440 Tripterygium wilfordii HOM05D005680 ORTHO05D006334 6.5e-06 53.9 80 47.5
TAR625G0576 Trochodendron aralioides HOM05D005680 ORTHO05D006334 6.5e-06 53.9 65 49.2
PSO063G6705 Papaver somniferum HOM05D005680 ORTHO05D006334 8.5e-06 53.5 66 47.0
Potri.005G145200 Populus trichocarpa HOM05D005680 ORTHO05D006334 8.5e-06 53.5 67 52.2


User provided reference genes

Program Settings