Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL4G12750 Arabidopsis lyrata HOM05D001585 ORTHO05D080633 5.9e-25 116.7 58 100.0
AL4G23000 Arabidopsis lyrata HOM05D001585 ORTHO05D080572 2.3e-24 114.8 58 98.3
AL5G27950 Arabidopsis lyrata HOM05D001585 ORTHO05D080698 2.3e-24 114.8 58 98.3
AL3G48620 Arabidopsis lyrata HOM05D001585 ORTHO05D001677 7.0e-18 93.2 47 95.7
AT2G19600 Arabidopsis thaliana HOM05D001585 ORTHO05D001677 1.6e-17 92.0 47 93.6
Sp3g32980 Schrenkiella parvula HOM05D001585 ORTHO05D001677 6.0e-17 90.1 45 95.6
Thhalv10001937m.g Eutrema salsugineum HOM05D001585 ORTHO05D001677 7.8e-17 89.7 45 95.6
BcaB03g16749 Brassica carinata HOM05D001585 ORTHO05D001677 1.3e-16 89.0 45 93.3
BcaB08g34876 Brassica carinata HOM05D001585 ORTHO05D001677 1.3e-16 89.0 45 93.3
BcaC06g36604 Brassica carinata HOM05D001585 ORTHO05D001677 1.3e-16 89.0 45 93.3
A07p01080 Brassica napus HOM05D001585 ORTHO05D001677 1.3e-16 89.0 45 93.3
A07p01090 Brassica napus HOM05D001585 ORTHO05D001677 1.3e-16 89.0 45 93.3
A07p01120 Brassica napus HOM05D001585 ORTHO05D001677 1.3e-16 89.0 45 93.3
C07p02250 Brassica napus HOM05D001585 ORTHO05D001677 1.3e-16 89.0 45 93.3
C08p42500 Brassica napus HOM05D001585 ORTHO05D001677 1.3e-16 89.0 45 93.3
BolC7t40635H Brassica oleracea HOM05D001585 ORTHO05D001677 1.3e-16 89.0 45 93.3
BolC8t51811H Brassica oleracea HOM05D001585 ORTHO05D001677 1.3e-16 89.0 45 93.3
BraA07t27908Z Brassica rapa HOM05D001585 ORTHO05D001677 1.3e-16 89.0 45 93.3
CARHR110050 Cardamine hirsuta HOM05D001585 ORTHO05D001677 1.7e-16 88.6 44 95.5
A09p59210 Brassica napus HOM05D001585 ORTHO05D001677 3.0e-16 87.8 45 91.1
BraA09t41305Z Brassica rapa HOM05D001585 ORTHO05D001677 3.0e-16 87.8 45 91.1
BcaC07g41244 Brassica carinata HOM05D001585 ORTHO05D001677 5.0e-16 87.0 45 91.1
Aa31LG8G16610 Aethionema arabicum HOM05D001585 ORTHO05D001677 1.1e-15 85.9 47 87.2
Carub.0003s3389 Capsella rubella HOM05D001585 ORTHO05D001677 3.6e-14 80.9 47 85.1
THA.LOC104814610 Tarenaya hassleriana HOM05D001585 ORTHO05D001677 1.2e-12 75.9 45 82.2
Glyma.17G229700 Glycine max HOM05D001585 ORTHO05D001677 2.2e-11 71.6 45 73.3
Thecc.09G091700 Theobroma cacao HOM05D001585 ORTHO05D001677 2.2e-11 71.6 44 79.5
Atru.chr7.1568 Acer truncatum HOM05D001585 ORTHO05D001677 2.9e-11 71.2 43 79.1
arahy.Tifrunner.gnm1.ann1.F2HWMC Arachis hypogaea HOM05D001585 ORTHO05D001677 3.7e-11 70.9 45 75.6
arahy.Tifrunner.gnm1.ann1.WZ05FZ Arachis hypogaea HOM05D001585 ORTHO05D001677 3.7e-11 70.9 45 75.6
Phvul.001G034400 Phaseolus vulgaris HOM05D001585 ORTHO05D001677 4.9e-11 70.5 53 64.2
Eucgr.C00907 Eucalyptus grandis HOM05D001585 ORTHO05D001677 6.4e-11 70.1 43 79.1
FvH4_2g32020 Fragaria vesca HOM05D001585 ORTHO05D001677 6.4e-11 70.1 49 69.4
FAN20G0535 Fragaria x ananassa HOM05D001585 ORTHO05D001677 6.4e-11 70.1 49 69.4
FAN24G2378 Fragaria x ananassa HOM05D001585 ORTHO05D001677 6.4e-11 70.1 49 69.4
Cpa.g.sc93.16 Carica papaya HOM05D001585 ORTHO05D001677 8.3e-11 69.7 45 73.3
MD08G1043400 Malus domestica HOM05D001585 ORTHO05D001677 8.3e-11 69.7 44 75.0
MD15G1060700 Malus domestica HOM05D001585 ORTHO05D001677 8.3e-11 69.7 44 75.0
Prupe.1G413300 Prunus persica HOM05D001585 ORTHO05D001677 8.3e-11 69.7 44 75.0
Thhalv10013063m.g Eutrema salsugineum HOM05D001585 ORTHO05D001677 1.4e-10 68.9 44 75.0
RcHm_v2.0_Chr6g0310731 Rosa chinensis HOM05D001585 ORTHO05D001677 1.4e-10 68.9 49 67.3
AT5G11800 Arabidopsis thaliana HOM05D001585 ORTHO05D001677 1.9e-10 68.6 44 75.0
Manes.03G032400 Manihot esculenta HOM05D001585 ORTHO05D001677 1.9e-10 68.6 44 75.0
Carub.0006s1033 Capsella rubella HOM05D001585 ORTHO05D001677 2.4e-10 68.2 46 71.7
Duzib187G0785 Durio zibethinus HOM05D001585 ORTHO05D001677 2.4e-10 68.2 45 73.3
Aqoxy7G01247 Aquilegia oxysepala HOM05D001585 ORTHO05D001677 3.2e-10 67.8 51 70.6
CARHR201370 Cardamine hirsuta HOM05D001585 ORTHO05D001677 3.2e-10 67.8 44 79.5
Gohir.A13G193600 Gossypium hirsutum HOM05D001585 ORTHO05D001677 3.2e-10 67.8 44 72.7
Gohir.D13G199400 Gossypium hirsutum HOM05D001585 ORTHO05D001677 3.2e-10 67.8 44 72.7
Gorai.013G228100 Gossypium raimondii HOM05D001585 ORTHO05D001677 3.2e-10 67.8 44 72.7
Nitab4.5_0004456g0020 Nicotiana tabacum HOM05D001585 ORTHO05D001677 3.2e-10 67.8 45 73.3
Duzib168G0538 Durio zibethinus HOM05D001585 ORTHO05D001677 4.1e-10 67.4 46 69.6
Lalb_Chr14g0367751 Lupinus albus HOM05D001585 ORTHO05D001677 5.4e-10 67.0 52 61.5
Nitab4.5_0001584g0110 Nicotiana tabacum HOM05D001585 ORTHO05D001677 5.4e-10 67.0 45 73.3
Sopen08g018920 Solanum pennellii HOM05D001585 ORTHO05D001677 7.1e-10 66.6 45 71.1
PGSC0003DMG400029945 Solanum tuberosum HOM05D001585 ORTHO05D001677 7.1e-10 66.6 45 71.1
THA.LOC104799700 Tarenaya hassleriana HOM05D001585 ORTHO05D001677 7.1e-10 66.6 43 74.4
THA.LOC104811246 Tarenaya hassleriana HOM05D001585 ORTHO05D001677 7.1e-10 66.6 42 76.2
Phvul.002G304300 Phaseolus vulgaris HOM05D001585 ORTHO05D001677 9.2e-10 66.2 44 70.5
PGR142G0668 Punica granatum HOM05D001585 ORTHO05D001677 9.2e-10 66.2 43 72.1
CANSAT25G3803 Cannabis sativa HOM05D001585 ORTHO05D001677 1.2e-09 65.9 44 70.5
Solyc08g065360.3 Solanum lycopersicum HOM05D001585 ORTHO05D001677 1.2e-09 65.9 45 71.1
TWI34G1297 Tripterygium wilfordii HOM05D001585 ORTHO05D001677 1.2e-09 65.9 44 68.2
BcaC03g13392 Brassica carinata HOM05D001585 ORTHO05D001677 1.6e-09 65.5 42 73.8
BcaC04g19194 Brassica carinata HOM05D001585 ORTHO05D001677 1.6e-09 65.5 44 77.3
BcaNung02652 Brassica carinata HOM05D001585 ORTHO05D001677 1.6e-09 65.5 44 77.3
BcaNung06825 Brassica carinata HOM05D001585 ORTHO05D001677 1.6e-09 65.5 42 73.8
A02p01210 Brassica napus HOM05D001585 ORTHO05D001677 1.6e-09 65.5 42 73.8
A10p25950 Brassica napus HOM05D001585 ORTHO05D001677 1.6e-09 65.5 44 77.3
C02p05380 Brassica napus HOM05D001585 ORTHO05D001677 1.6e-09 65.5 42 73.8
C09p65030 Brassica napus HOM05D001585 ORTHO05D001677 1.6e-09 65.5 44 77.3
BolC2t06487H Brassica oleracea HOM05D001585 ORTHO05D001677 1.6e-09 65.5 42 73.8
BolC9t59331H Brassica oleracea HOM05D001585 ORTHO05D001677 1.6e-09 65.5 44 77.3
BraA02t05100Z Brassica rapa HOM05D001585 ORTHO05D001677 1.6e-09 65.5 42 73.8
BraA10t44657Z Brassica rapa HOM05D001585 ORTHO05D001677 1.6e-09 65.5 44 77.3
Sp6g31800 Schrenkiella parvula HOM05D001585 ORTHO05D001677 1.6e-09 65.5 44 77.3
TWI34G1940 Tripterygium wilfordii HOM05D001585 ORTHO05D001677 2.1e-09 65.1 44 70.5
AL6G22550 Arabidopsis lyrata HOM05D001585 ORTHO05D001677 2.7e-09 64.7 46 69.6
Dinv27979 Davidia involucrata HOM05D001585 ORTHO05D001677 2.7e-09 64.7 45 66.7
Sabra06G0178500 Salix brachista HOM05D001585 ORTHO05D001677 3.5e-09 64.3 46 71.7
Sc08g0008370 Simmondsia chinensis HOM05D001585 ORTHO05D001677 3.5e-09 64.3 46 71.7
Sc18g0001940 Simmondsia chinensis HOM05D001585 ORTHO05D001677 3.5e-09 64.3 36 80.6
Actinidia25261 Actinidia chinensis HOM05D001585 ORTHO05D001677 4.6e-09 63.9 47 66.0
Cfa003106 Carpinus fangiana HOM05D001585 ORTHO05D001677 6.0e-09 63.5 51 64.7
Lj4g0021490 Lotus japonicus HOM05D001585 ORTHO05D001677 6.0e-09 63.5 45 71.1
Ciclev10007842m.g Citrus clementina HOM05D001585 ORTHO05D001677 7.8e-09 63.2 36 83.3
Oeu018647.1 Olea europaea HOM05D001585 ORTHO05D001677 7.8e-09 63.2 46 67.4
CANSAT31G0003 Cannabis sativa HOM05D001585 ORTHO05D001677 1.0e-08 62.8 36 80.6
CANSAT56G2745 Cannabis sativa HOM05D001585 ORTHO05D001677 1.0e-08 62.8 36 80.6
Glyma.05G222500 Glycine max HOM05D001585 ORTHO05D001677 1.0e-08 62.8 44 68.2
Manes.16G103200 Manihot esculenta HOM05D001585 ORTHO05D001677 1.0e-08 62.8 43 69.8
TWI63G0046 Tripterygium wilfordii HOM05D001585 ORTHO05D001677 1.0e-08 62.8 53 58.5
VMungo0251G0754 Vigna mungo HOM05D001585 ORTHO05D001677 1.0e-08 62.8 44 65.9
Ca_13173_v3 Cicer arietinum L. HOM05D001585 ORTHO05D001677 1.3e-08 62.4 45 64.4
Ca_14354_v3 Cicer arietinum L. HOM05D001585 ORTHO05D001677 1.3e-08 62.4 45 64.4
Glyma.14G093900 Glycine max HOM05D001585 ORTHO05D001677 1.3e-08 62.4 46 67.4
Lj7A673G65 Lonicera japonica HOM05D001585 ORTHO05D001677 1.3e-08 62.4 49 67.3
arahy.Tifrunner.gnm1.ann1.Q6VRMV Arachis hypogaea HOM05D001585 ORTHO05D001677 1.7e-08 62.0 44 68.2
arahy.Tifrunner.gnm1.ann1.WHT2R9 Arachis hypogaea HOM05D001585 ORTHO05D001677 1.7e-08 62.0 44 68.2
Dinv42305 Davidia involucrata HOM05D001585 ORTHO05D001677 1.7e-08 62.0 46 67.4
CSS0021246 Camellia sinensis var. sinensis HOM05D001585 ORTHO05D001677 2.3e-08 61.6 45 64.4
CSS0039494 Camellia sinensis var. sinensis HOM05D001585 ORTHO05D001677 2.3e-08 61.6 45 64.4
Nn8g38902 Nelumbo nucifera HOM05D001585 ORTHO05D001677 2.3e-08 61.6 44 68.2
Potri.018G054100 Populus trichocarpa HOM05D001585 ORTHO05D001677 2.3e-08 61.6 46 67.4
SGA_v2.0_scaffold187G40260 Striga asiatica HOM05D001585 ORTHO05D001677 2.3e-08 61.6 48 66.7
vmacro00146 Vaccinium macrocarpon HOM05D001585 ORTHO05D001677 2.3e-08 61.6 54 59.3
CSS0000314 Camellia sinensis var. sinensis HOM05D001585 ORTHO05D001677 3.0e-08 61.2 46 65.2
Potri.006G230400 Populus trichocarpa HOM05D001585 ORTHO05D001677 3.0e-08 61.2 46 69.6
QL02p001335 Quercus lobata HOM05D001585 ORTHO05D001677 3.0e-08 61.2 44 68.2
CiPaw.16G029000 Carya illinoinensis HOM05D001585 ORTHO05D001677 3.9e-08 60.8 53 56.6
Ca_17404_v3 Cicer arietinum L. HOM05D001585 ORTHO05D001677 3.9e-08 60.8 44 68.2
MD15G1204800 Malus domestica HOM05D001585 ORTHO05D001677 3.9e-08 60.8 45 64.4
Actinidia01192 Actinidia chinensis HOM05D001585 ORTHO05D001677 5.1e-08 60.5 45 64.4
Actinidia30309 Actinidia chinensis HOM05D001585 ORTHO05D001677 5.1e-08 60.5 45 64.4
Haze_25894 Corylus avellana HOM05D001585 ORTHO05D001677 5.1e-08 60.5 51 60.8
Glyma.08G029300 Glycine max HOM05D001585 ORTHO05D001677 5.1e-08 60.5 44 65.9
Gohir.D08G266200 Gossypium hirsutum HOM05D001585 ORTHO05D001677 5.1e-08 60.5 44 65.9
Gorai.004G283900 Gossypium raimondii HOM05D001585 ORTHO05D001677 5.1e-08 60.5 44 65.9
Nn6g35437 Nelumbo nucifera HOM05D001585 ORTHO05D001677 5.1e-08 60.5 44 65.9
Hund06687 Selenicereus undatus HOM05D001585 ORTHO05D001677 5.1e-08 60.5 45 64.4
MSTRG.25946 Avicennia marina HOM05D001585 ORTHO05D001677 6.6e-08 60.1 52 65.4
MELO3C010757.2 Cucumis melo HOM05D001585 ORTHO05D001677 6.6e-08 60.1 47 63.8
Hma1.2p1_0800F.1_g220020 Hydrangea macrophylla HOM05D001585 ORTHO05D001677 6.6e-08 60.1 45 68.9
Lj8A543G13 Lonicera japonica HOM05D001585 ORTHO05D001677 6.6e-08 60.1 47 61.7
Psat6g020840 Pisum sativum HOM05D001585 ORTHO05D001677 6.6e-08 60.1 46 65.2
Cfa017948 Carpinus fangiana HOM05D001585 ORTHO05D001677 8.6e-08 59.7 45 64.4
Haze_18199 Corylus avellana HOM05D001585 ORTHO05D001677 8.6e-08 59.7 45 64.4
SGA_v2.0_scaffold88G27224 Striga asiatica HOM05D001585 ORTHO05D001677 8.6e-08 59.7 46 67.4
TPR.G13009 Trifolium pratense HOM05D001585 ORTHO05D001677 1.1e-07 59.3 45 62.2
ClCG08G016990 Citrullus lanatus HOM05D001585 ORTHO05D001677 1.5e-07 58.9 45 64.4
CsaV3_2G025600 Cucumis sativus L. HOM05D001585 ORTHO05D001677 1.5e-07 58.9 45 64.4
HanXRQChr09g0238141 Helianthus annuus HOM05D001585 ORTHO05D001677 1.5e-07 58.9 41 70.7
Lsat_1_v5_gn_7_37560 Lactuca sativa HOM05D001585 ORTHO05D001677 1.5e-07 58.9 41 73.2
Psat7g019880 Pisum sativum HOM05D001585 ORTHO05D001677 1.5e-07 58.9 45 68.9
RcHm_v2.0_Chr2g0093081 Rosa chinensis HOM05D001585 ORTHO05D001677 1.5e-07 58.9 42 64.3
Gohir.A08G245200 Gossypium hirsutum HOM05D001585 ORTHO05D001677 1.9e-07 58.5 44 63.6
Lj5g0015997 Lotus japonicus HOM05D001585 ORTHO05D001677 1.9e-07 58.5 53 56.6
MBI04_g37459_MAGBIO Magnolia biondii HOM05D001585 ORTHO05D001677 1.9e-07 58.5 47 59.6
TWI32G0209 Tripterygium wilfordii HOM05D001585 ORTHO05D001677 1.9e-07 58.5 52 57.7
Cc06_g11220 Coffea canephora HOM05D001585 ORTHO05D001677 2.5e-07 58.2 49 67.3
Dinv36753 Davidia involucrata HOM05D001585 ORTHO05D001677 2.5e-07 58.2 47 61.7
Hma1.2p1_0482F.1_g162560 Hydrangea macrophylla HOM05D001585 ORTHO05D001677 2.5e-07 58.2 45 60.0
Lsat_1_v5_gn_6_13321 Lactuca sativa HOM05D001585 ORTHO05D001677 2.5e-07 58.2 44 65.9
ECA240G2803 Erigeron canadensis HOM05D001585 ORTHO05D001677 3.3e-07 57.8 43 67.4
Lalb_Chr05g0223611 Lupinus albus HOM05D001585 ORTHO05D001677 3.3e-07 57.8 45 62.2
Rhsim11G0044600 Rhododendron simsii HOM05D001585 ORTHO05D001677 3.3e-07 57.8 44 65.9
SalBow4G1098 Salvia bowleyana HOM05D001585 ORTHO05D001677 3.3e-07 57.8 45 64.4
SEGI_10592 Sequoiadendron giganteum HOM05D001585 ORTHO05D001677 3.3e-07 57.8 37 75.7
Medtr8g101640 Medicago truncatula HOM05D001585 ORTHO05D001677 4.3e-07 57.4 44 68.2
TPR.G25481 Trifolium pratense HOM05D001585 ORTHO05D001677 4.3e-07 57.4 44 68.2
MSTRG.11662 Avicennia marina HOM05D001585 ORTHO05D001677 5.6e-07 57.0 46 65.2
CSS0008147 Camellia sinensis var. sinensis HOM05D001585 ORTHO05D001677 5.6e-07 57.0 47 57.4
Gohir.A06G089000 Gossypium hirsutum HOM05D001585 ORTHO05D001677 5.6e-07 57.0 47 68.1
Gohir.D06G088000 Gossypium hirsutum HOM05D001585 ORTHO05D001677 5.6e-07 57.0 47 68.1
Gorai.010G101600 Gossypium raimondii HOM05D001585 ORTHO05D001677 5.6e-07 57.0 47 68.1
Oeu036340.1 Olea europaea HOM05D001585 ORTHO05D001677 5.6e-07 57.0 46 69.6
Hund25821 Selenicereus undatus HOM05D001585 ORTHO05D001677 5.6e-07 57.0 46 63.0
Thecc.09G053000 Theobroma cacao HOM05D001585 ORTHO05D001677 5.6e-07 57.0 47 68.1
ATR0705G169 Amborella trichopoda HOM05D001585 ORTHO05D001677 7.3e-07 56.6 36 75.0
Prupe.7G212100 Prunus persica HOM05D001585 ORTHO05D001677 7.3e-07 56.6 35 71.4
CiPaw.15G039600 Carya illinoinensis HOM05D001585 ORTHO05D001677 1.2e-06 55.8 53 52.8
Duzib187G0156 Durio zibethinus HOM05D001585 ORTHO05D001677 1.2e-06 55.8 47 66.0
HanXRQChr03g0060741 Helianthus annuus HOM05D001585 ORTHO05D001677 1.2e-06 55.8 42 69.0
CSS0032721 Camellia sinensis var. sinensis HOM05D001585 ORTHO05D001677 1.6e-06 55.5 47 55.3
Migut.A00140 Erythranthe guttata HOM05D001585 ORTHO05D001677 1.6e-06 55.5 46 63.0
Ah.09g228390 Amaranthus hybridus HOM05D001585 ORTHO05D001677 2.8e-06 54.7 44 59.1
CDE02G4525 Ceratophyllum demersum HOM05D001585 ORTHO05D001677 2.8e-06 54.7 37 70.3
CDE09G0556 Ceratophyllum demersum HOM05D001585 ORTHO05D001677 2.8e-06 54.7 37 70.3
COL.COLO4_21048 Corchorus olitorius HOM05D001585 ORTHO05D001677 2.8e-06 54.7 47 66.0
HanXRQChr07g0202421 Helianthus annuus HOM05D001585 ORTHO05D001677 2.8e-06 54.7 43 62.8
Manes.16G079700 Manihot esculenta HOM05D001585 ORTHO05D001677 2.8e-06 54.7 46 60.9
COL.COLO4_18218 Corchorus olitorius HOM05D001585 ORTHO05D001677 3.6e-06 54.3 57 52.6
AUR62027477 Chenopodium quinoa HOM05D001585 ORTHO05D001677 4.7e-06 53.9 30 83.3
AUR62033999 Chenopodium quinoa HOM05D001585 ORTHO05D001677 4.7e-06 53.9 30 83.3
FAN26G0059 Fragaria x ananassa HOM05D001585 ORTHO05D001677 4.7e-06 53.9 42 57.1
MBI01_g02253_MAGBIO Magnolia biondii HOM05D001585 ORTHO05D001677 4.7e-06 53.9 51 58.8
QL02p062945 Quercus lobata HOM05D001585 ORTHO05D001677 4.7e-06 53.9 46 65.2
ECA233G3186 Erigeron canadensis HOM05D001585 ORTHO05D001677 6.2e-06 53.5 46 63.0
MELO3C015457.2 Cucumis melo HOM05D001585 ORTHO05D001677 8.1e-06 53.1 46 58.7
CsaV3_1G040300 Cucumis sativus L. HOM05D001585 ORTHO05D001677 8.1e-06 53.1 46 58.7
Sed0022659 Sechium edule HOM05D001585 ORTHO05D001677 8.1e-06 53.1 46 56.5


User provided reference genes

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