Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL4G12440 Arabidopsis lyrata HOM05D001756 ORTHO05D001581 6.8e-41 170.2 87 100.0
AT2G22860 Arabidopsis thaliana HOM05D001756 ORTHO05D001581 1.3e-36 156.0 85 94.1
Carub.0004s0199 Capsella rubella HOM05D001756 ORTHO05D001581 1.4e-33 146.0 87 82.8
Sp4g01910 Schrenkiella parvula HOM05D001756 ORTHO05D001581 3.4e-32 141.4 88 80.7
CARHR114180 Cardamine hirsuta HOM05D001756 ORTHO05D001581 2.4e-30 135.2 84 82.1
Thhalv10000381m.g Eutrema salsugineum HOM05D001756 ORTHO05D001581 2.1e-29 132.1 87 79.3
BcaB06g27846 Brassica carinata HOM05D001756 ORTHO05D001581 3.0e-28 128.3 88 77.3
C04p52190 Brassica napus HOM05D001756 ORTHO05D001581 3.9e-28 127.9 88 77.3
BcaC02g08589 Brassica carinata HOM05D001756 ORTHO05D001581 5.1e-28 127.5 88 77.3
BolC4t26796H Brassica oleracea HOM05D001756 ORTHO05D001581 5.1e-28 127.5 88 77.3
A04p17430 Brassica napus HOM05D001756 ORTHO05D001581 1.5e-27 125.9 88 76.1
BraA04t17366Z Brassica rapa HOM05D001756 ORTHO05D001581 1.5e-27 125.9 88 76.1
CARHR114170 Cardamine hirsuta HOM05D001756 ORTHO05D001581 5.6e-27 124.0 84 76.2
THA.LOC104819883 Tarenaya hassleriana HOM05D001756 ORTHO05D001581 2.7e-21 105.1 85 62.4
THA.LOC104804198 Tarenaya hassleriana HOM05D001756 ORTHO05D001581 4.7e-18 94.4 85 56.5
AT4G37720 Arabidopsis thaliana HOM05D012092 ORTHO05D001581 2.9e-15 85.1 84 59.5
CARHR246110 Cardamine hirsuta HOM05D012092 ORTHO05D001581 3.8e-15 84.7 84 63.1
Sp7g35370 Schrenkiella parvula HOM05D012092 ORTHO05D001581 8.4e-15 83.6 84 63.1
Prupe.6G217500 Prunus persica HOM05D001756 ORTHO05D001581 5.4e-14 80.9 82 54.9
BcaB03g12333 Brassica carinata HOM05D012092 ORTHO05D001581 2.1e-13 79.0 87 54.0
A08p22740 Brassica napus HOM05D012092 ORTHO05D001581 3.5e-13 78.2 83 56.6
BraA08t34243Z Brassica rapa HOM05D012092 ORTHO05D001581 3.5e-13 78.2 83 56.6
Carub.0007s0253 Capsella rubella HOM05D012092 ORTHO05D001581 3.5e-13 78.2 86 60.5
AL7G12960 Arabidopsis lyrata HOM05D012092 ORTHO05D001581 1.1e-11 73.2 66 62.1
Actinidia16413 Actinidia chinensis HOM05D001756 ORTHO05D001581 1.9e-11 72.4 83 49.4
Cpa.g.c33491 Carica papaya HOM05D001756 ORTHO05D001581 2.5e-11 72.0 84 52.4
Hma1.2p1_1760F.1_g301210 Hydrangea macrophylla HOM05D001756 ORTHO05D001581 1.3e-10 69.7 84 50.0
Lj7A111T6 Lonicera japonica HOM05D001756 ORTHO05D001581 1.6e-10 69.3 84 46.4
Sabra07G0005100 Salix brachista HOM05D001756 ORTHO05D001581 1.6e-10 69.3 87 50.6
Hma1.2p1_2434F.1_g322120 Hydrangea macrophylla HOM05D001756 ORTHO05D001581 2.1e-10 68.9 84 50.0
Potri.007G006800 Populus trichocarpa HOM05D001756 ORTHO05D001581 2.8e-10 68.6 87 48.3
Thhalv10026843m.g Eutrema salsugineum HOM05D012092 ORTHO05D001581 3.6e-10 68.2 84 56.0
BcaNung02085 Brassica carinata HOM05D012092 ORTHO05D001581 4.8e-10 67.8 82 53.7
C07p62600 Brassica napus HOM05D012092 ORTHO05D001581 4.8e-10 67.8 82 53.7
BolC7t46675H Brassica oleracea HOM05D012092 ORTHO05D001581 4.8e-10 67.8 82 53.7
Rhsim10G0094800 Rhododendron simsii HOM05D001756 ORTHO05D001581 4.8e-10 67.8 83 49.4
A03p65500 Brassica napus HOM05D012092 ORTHO05D001581 6.2e-10 67.4 82 53.7
BraA03t15602Z Brassica rapa HOM05D012092 ORTHO05D001581 6.2e-10 67.4 82 53.7
Sabra14G0006400 Salix brachista HOM05D001756 ORTHO05D001581 6.2e-10 67.4 82 51.2
CARHR158860 Cardamine hirsuta HOM05D001756 ORTHO05D001581 1.1e-09 66.6 84 51.2
Thhalv10010875m.g Eutrema salsugineum HOM05D001756 ORTHO05D001581 1.1e-09 66.6 84 50.0
CSS0000381 Camellia sinensis var. sinensis HOM05D001756 ORTHO05D001581 1.4e-09 66.2 84 51.2
RcHm_v2.0_Chr2g0108571 Rosa chinensis HOM05D001756 ORTHO05D001581 1.4e-09 66.2 85 52.9
Actinidia28000 Actinidia chinensis HOM05D001756 ORTHO05D001581 1.8e-09 65.9 82 53.7
CSS0040959 Camellia sinensis var. sinensis HOM05D001756 ORTHO05D001581 1.8e-09 65.9 83 50.6
Actinidia04395 Actinidia chinensis HOM05D001756 ORTHO05D001581 2.4e-09 65.5 82 51.2
AL5G29770 Arabidopsis lyrata HOM05D001756 ORTHO05D001581 2.4e-09 65.5 84 50.0
FAN26G2568 Fragaria x ananassa HOM05D001756 ORTHO05D001581 2.4e-09 65.5 88 51.1
FAN23G1434 Fragaria x ananassa HOM05D001756 ORTHO05D001581 3.1e-09 65.1 85 49.4
THA.LOC104827714 Tarenaya hassleriana HOM05D001756 ORTHO05D001581 4.0e-09 64.7 81 50.6
Hma1.2p1_0424F.1_g150520 Hydrangea macrophylla HOM05D001756 ORTHO05D001581 6.9e-09 63.9 84 47.6
Lj4A164T42 Lonicera japonica HOM05D001756 ORTHO05D001581 6.9e-09 63.9 85 44.7
Potri.014G006900 Populus trichocarpa HOM05D001756 ORTHO05D001581 6.9e-09 63.9 83 47.0
Actinidia34539 Actinidia chinensis HOM05D001756 ORTHO05D001581 9.0e-09 63.5 84 45.2
Sp5g12310 Schrenkiella parvula HOM05D001756 ORTHO05D001581 9.0e-09 63.5 84 50.0
Actinidia11965 Actinidia chinensis HOM05D001756 ORTHO05D001581 1.2e-08 63.2 84 44.0
Dinv09540 Davidia involucrata HOM05D001756 ORTHO05D001581 1.5e-08 62.8 85 50.6
Atru.chr3.1054 Acer truncatum HOM05D001756 ORTHO05D001581 2.0e-08 62.4 81 49.4
AT3G49780 Arabidopsis thaliana HOM05D001756 ORTHO05D001581 2.6e-08 62.0 84 48.8
C08p24800 Brassica napus HOM05D001756 ORTHO05D001581 2.6e-08 62.0 84 48.8
BolC8t50097H Brassica oleracea HOM05D001756 ORTHO05D001581 2.6e-08 62.0 84 48.8
Dinv26955 Davidia involucrata HOM05D001756 ORTHO05D001581 3.4e-08 61.6 84 50.0
BcaB05g23153 Brassica carinata HOM05D001756 ORTHO05D001581 4.4e-08 61.2 75 53.3
A09p42920 Brassica napus HOM05D001756 ORTHO05D001581 4.4e-08 61.2 84 48.8
BraA09t39759Z Brassica rapa HOM05D001756 ORTHO05D001581 4.4e-08 61.2 84 48.8
CiPaw.02G001200 Carya illinoinensis HOM05D001756 ORTHO05D001581 4.4e-08 61.2 86 47.7
Dinv44936 Davidia involucrata HOM05D001756 ORTHO05D001581 5.8e-08 60.8 84 47.6
Eucgr.H02325 Eucalyptus grandis HOM05D001756 ORTHO05D001581 5.8e-08 60.8 83 45.8
MD02G1189200 Malus domestica HOM05D001756 ORTHO05D001581 5.8e-08 60.8 85 47.1
C01p30590 Brassica napus HOM05D001756 ORTHO05D001581 7.6e-08 60.5 84 50.0
BolC1t02995H Brassica oleracea HOM05D001756 ORTHO05D001581 7.6e-08 60.5 84 50.0
Glyma.14G089063 Glycine max HOM05D001756 ORTHO05D001581 7.6e-08 60.5 83 42.2
AUR62007537 Chenopodium quinoa HOM05D001756 ORTHO05D001581 9.9e-08 60.1 84 50.0
Eucgr.H02324 Eucalyptus grandis HOM05D001756 ORTHO05D001581 9.9e-08 60.1 84 46.4
Actinidia00357 Actinidia chinensis HOM05D001756 ORTHO05D001581 1.3e-07 59.7 84 46.4
BcaC07g39442 Brassica carinata HOM05D001756 ORTHO05D001581 1.3e-07 59.7 75 52.0
A01p24530 Brassica napus HOM05D001756 ORTHO05D001581 1.3e-07 59.7 84 48.8
BraA01t02363Z Brassica rapa HOM05D001756 ORTHO05D001581 1.3e-07 59.7 84 48.8
CAN.G1343.2 Capsicum annuum HOM05D001756 ORTHO05D001581 1.3e-07 59.7 77 46.8
Lj5g0025862 Lotus japonicus HOM05D001756 ORTHO05D001581 1.3e-07 59.7 85 48.2
PSO017G5266 Papaver somniferum HOM05D001756 ORTHO05D001581 1.3e-07 59.7 80 50.0
vmacro01948 Vaccinium macrocarpon HOM05D001756 ORTHO05D001581 1.3e-07 59.7 83 49.4
HanXRQChr12g0376281 Helianthus annuus HOM05D001756 ORTHO05D001581 1.7e-07 59.3 76 53.9
Hma1.2p1_1051F.1_g252120 Hydrangea macrophylla HOM05D001756 ORTHO05D001581 1.7e-07 59.3 86 47.7
QL12p038416 Quercus lobata HOM05D001756 ORTHO05D001581 1.7e-07 59.3 86 46.5
Carub.0005s1613 Capsella rubella HOM05D001756 ORTHO05D001581 2.2e-07 58.9 84 47.6
COL.COLO4_28472 Corchorus olitorius HOM05D001756 ORTHO05D001581 2.2e-07 58.9 84 45.2
Potri.002G116300 Populus trichocarpa HOM05D001756 ORTHO05D001581 2.2e-07 58.9 84 42.9
RhsimUnG0122800 Rhododendron simsii HOM05D001756 ORTHO05D001581 2.2e-07 58.9 81 45.7
TAR628G0014 Trochodendron aralioides HOM05D001756 ORTHO05D001581 2.2e-07 58.9 82 46.3
BcaB01g00674 Brassica carinata HOM05D001756 ORTHO05D001581 2.9e-07 58.5 75 52.0
Rhsim08G0091400 Rhododendron simsii HOM05D001756 ORTHO05D001581 2.9e-07 58.5 75 48.0
Thecc.01G075600 Theobroma cacao HOM05D001756 ORTHO05D001581 2.9e-07 58.5 84 44.0
GSVIVG01004437001 Vitis vinifera HOM05D001756 ORTHO05D001581 2.9e-07 58.5 81 43.2
BcaC09g49971 Brassica carinata HOM05D001756 ORTHO05D001581 3.8e-07 58.2 75 53.3
CSS0039448 Camellia sinensis var. sinensis HOM05D001756 ORTHO05D001581 3.8e-07 58.2 85 48.2
AUR62004029 Chenopodium quinoa HOM05D001756 ORTHO05D001581 3.8e-07 58.2 84 48.8
Ca_24672_v3 Cicer arietinum L. HOM05D001756 ORTHO05D001581 3.8e-07 58.2 81 44.4
Ca_30012_v3 Cicer arietinum L. HOM05D001756 ORTHO05D001581 3.8e-07 58.2 81 44.4
MD15G1300000 Malus domestica HOM05D001756 ORTHO05D001581 4.9e-07 57.8 80 47.5
Rhsim08G0091500 Rhododendron simsii HOM05D001756 ORTHO05D001581 6.4e-07 57.4 81 45.7
Thecc.02G119700 Theobroma cacao HOM05D001756 ORTHO05D001581 6.4e-07 57.4 85 45.9
Thecc.08G085400 Theobroma cacao HOM05D001756 ORTHO05D001581 8.4e-07 57.0 84 44.0
Cfa004702 Carpinus fangiana HOM05D001756 ORTHO05D001581 1.1e-06 56.6 86 47.7
CiPaw.01G002400 Carya illinoinensis HOM05D001756 ORTHO05D001581 1.1e-06 56.6 88 48.9
Duzib132G0635 Durio zibethinus HOM05D001756 ORTHO05D001581 1.1e-06 56.6 86 46.5
Glyma.17G233400 Glycine max HOM05D001756 ORTHO05D001581 1.1e-06 56.6 84 44.0
Lalb_Chr06g0164991 Lupinus albus HOM05D001756 ORTHO05D001581 1.1e-06 56.6 68 48.5
Prupe.1G420000 Prunus persica HOM05D001756 ORTHO05D001581 1.1e-06 56.6 82 46.3
TAR376G0419 Trochodendron aralioides HOM05D001756 ORTHO05D001581 1.1e-06 56.6 84 45.2
Haze_10304 Corylus avellana HOM05D001756 ORTHO05D001581 1.4e-06 56.2 86 47.7
ECA238G4790 Erigeron canadensis HOM05D001756 ORTHO05D001581 1.4e-06 56.2 77 48.1
ECA246G3808 Erigeron canadensis HOM05D001756 ORTHO05D001581 1.4e-06 56.2 76 46.1
Glyma.01G195700 Glycine max HOM05D001756 ORTHO05D001581 1.4e-06 56.2 82 41.5
Glyma.17G233500 Glycine max HOM05D001756 ORTHO05D001581 1.4e-06 56.2 83 41.0
Gohir.A12G078300 Gossypium hirsutum HOM05D001756 ORTHO05D001581 1.4e-06 56.2 87 43.7
Medtr1g106030 Medicago truncatula HOM05D001756 ORTHO05D001581 1.4e-06 56.2 32 81.2
RhsimUnG0041200 Rhododendron simsii HOM05D001756 ORTHO05D001581 1.4e-06 56.2 85 47.1
RhsimUnG0123200 Rhododendron simsii HOM05D001756 ORTHO05D001581 1.4e-06 56.2 85 47.1
vmacro01947 Vaccinium macrocarpon HOM05D001756 ORTHO05D001581 1.4e-06 56.2 84 46.4
Duzib264G0169 Durio zibethinus HOM05D001756 ORTHO05D001581 1.9e-06 55.8 87 43.7
Eucgr.I00676 Eucalyptus grandis HOM05D001756 ORTHO05D001581 1.9e-06 55.8 81 44.4
Ciclev10029689m.g Citrus clementina HOM05D001756 ORTHO05D001581 2.4e-06 55.5 62 48.4
Dinv16070 Davidia involucrata HOM05D001756 ORTHO05D001581 2.4e-06 55.5 86 46.5
Os03g0232400 Oryza sativa ssp. japonica HOM05D056024 ORTHO05D001581 2.4e-06 55.5 95 44.2
Duzib147G1196 Durio zibethinus HOM05D001756 ORTHO05D001581 3.2e-06 55.1 86 45.3
PGR004G0933 Punica granatum HOM05D001756 ORTHO05D001581 3.2e-06 55.1 85 45.9
TPR.G21156 Trifolium pratense HOM05D001756 ORTHO05D001581 3.2e-06 55.1 61 47.5
GSVIVG01009309001 Vitis vinifera HOM05D001756 ORTHO05D001581 3.2e-06 55.1 85 43.5
arahy.Tifrunner.gnm1.ann1.APU27B Arachis hypogaea HOM05D001756 ORTHO05D001581 4.2e-06 54.7 85 37.6
Duzib093G0345 Durio zibethinus HOM05D001756 ORTHO05D001581 4.2e-06 54.7 84 45.2
Duzib116G0348 Durio zibethinus HOM05D001756 ORTHO05D001581 4.2e-06 54.7 84 42.9
Gorai.008G085100 Gossypium raimondii HOM05D001756 ORTHO05D001581 4.2e-06 54.7 87 43.7
Hma1.2p1_0210F.1_g089330 Hydrangea macrophylla HOM05D001756 ORTHO05D001581 4.2e-06 54.7 80 48.8
Manes.07G057300 Manihot esculenta HOM05D001756 ORTHO05D001581 4.2e-06 54.7 84 45.2
Manes.13G109600 Manihot esculenta HOM05D001756 ORTHO05D001581 4.2e-06 54.7 80 47.5
PSO170G3613 Papaver somniferum HOM05D001756 ORTHO05D001581 4.2e-06 54.7 80 46.2
Psat2g172320 Pisum sativum HOM05D001756 ORTHO05D001581 4.2e-06 54.7 81 40.7
Hund13962 Selenicereus undatus HOM05D001756 ORTHO05D001581 4.2e-06 54.7 83 48.2
GSVIVG01037055001 Vitis vinifera HOM05D001756 ORTHO05D001581 4.2e-06 54.7 87 46.0
arahy.Tifrunner.gnm1.ann1.200WTN Arachis hypogaea HOM05D001756 ORTHO05D001581 5.4e-06 54.3 85 37.6
CSS0048145 Camellia sinensis var. sinensis HOM05D001756 ORTHO05D001581 5.4e-06 54.3 84 40.5
Ciclev10026870m.g Citrus clementina HOM05D001756 ORTHO05D001581 5.4e-06 54.3 81 45.7
CsaV3_6G044290 Cucumis sativus L. HOM05D001756 ORTHO05D001581 5.4e-06 54.3 75 45.3
Gohir.D12G076500 Gossypium hirsutum HOM05D001756 ORTHO05D001581 5.4e-06 54.3 87 43.7
RcHm_v2.0_Chr6g0309921 Rosa chinensis HOM05D001756 ORTHO05D001581 5.4e-06 54.3 89 44.9
vmacro18016 Vaccinium macrocarpon HOM05D001756 ORTHO05D001581 5.4e-06 54.3 78 44.9
arahy.Tifrunner.gnm1.ann1.0BB13E Arachis hypogaea HOM05D001756 ORTHO05D001581 7.1e-06 53.9 42 64.3
arahy.Tifrunner.gnm1.ann1.IGD037 Arachis hypogaea HOM05D001756 ORTHO05D001581 7.1e-06 53.9 43 65.1
FAN20G1648 Fragaria x ananassa HOM05D001756 ORTHO05D001581 7.1e-06 53.9 77 48.1
Nitab4.5_0002525g0020 Nicotiana tabacum HOM05D001756 ORTHO05D001581 7.1e-06 53.9 86 40.7
Rhsim08G0091000 Rhododendron simsii HOM05D001756 ORTHO05D001581 7.1e-06 53.9 87 44.8
Atru.chr13.861 Acer truncatum HOM05D001756 ORTHO05D001581 9.3e-06 53.5 86 47.7
Atru.chr5.2299 Acer truncatum HOM05D001756 ORTHO05D001581 9.3e-06 53.5 82 45.1
HanXRQChr08g0233231 Helianthus annuus HOM05D001756 ORTHO05D001581 9.3e-06 53.5 76 50.0
HPP92_015705 Vanilla planifolia HOM05D001756 ORTHO05D001581 9.3e-06 53.5 81 44.4
HPP92_026657 Vanilla planifolia HOM05D001756 ORTHO05D001581 9.3e-06 53.5 81 44.4


User provided reference genes

Program Settings