Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL4G11580 Arabidopsis lyrata HOM05D006133 ORTHO05D007855 8.1e-71 270.8 190 100.0
AT2G33793 Arabidopsis thaliana HOM05D006133 ORTHO05D007855 5.4e-51 204.9 213 62.9
Carub.0004s1546 Capsella rubella HOM05D006133 ORTHO05D007855 1.1e-48 197.2 215 58.1
Thhalv10017234m.g Eutrema salsugineum HOM05D006133 ORTHO05D007855 9.6e-48 194.1 212 63.2
AL4G29540 Arabidopsis lyrata HOM05D006133 ORTHO05D007855 6.2e-47 191.4 213 57.3
CARHR127900 Cardamine hirsuta HOM05D006133 ORTHO05D007855 4.0e-46 188.7 213 54.0
BolC4t27810H Brassica oleracea HOM05D006133 ORTHO05D007855 1.3e-44 183.7 215 56.7
BcaC02g07769 Brassica carinata HOM05D006133 ORTHO05D007855 1.1e-43 180.6 214 56.5
A04p26010 Brassica napus HOM05D006133 ORTHO05D007855 5.5e-43 178.3 216 65.3
Sp4g16180 Schrenkiella parvula HOM05D006133 ORTHO05D007855 2.6e-37 159.5 212 50.9
THA.LOC104814218 Tarenaya hassleriana HOM05D006133 ORTHO05D007855 5.8e-37 158.3 211 51.7
BolC4t23106H Brassica oleracea HOM05D006133 ORTHO05D007855 3.8e-36 155.6 169 62.7
Manes.16G026900 Manihot esculenta HOM05D006133 ORTHO05D007855 1.9e-35 153.3 194 50.0
Thecc.06G188500 Theobroma cacao HOM05D006133 ORTHO05D007855 7.1e-35 151.4 202 48.0
Lj1A1206T67 Lonicera japonica HOM05D006133 ORTHO05D007855 7.9e-34 147.9 186 52.2
Atru.chr10.1894 Acer truncatum HOM05D006133 ORTHO05D007855 1.1e-32 144.1 204 45.6
BcaC02g11457 Brassica carinata HOM05D006133 ORTHO05D007855 1.1e-32 144.1 111 70.3
C04p15330 Brassica napus HOM05D006133 ORTHO05D007855 1.1e-32 144.1 111 70.3
QL05p040164 Quercus lobata HOM05D006133 ORTHO05D007855 1.1e-32 144.1 199 46.7
CiPaw.09G059200 Carya illinoinensis HOM05D006133 ORTHO05D007855 4.3e-32 142.1 205 45.4
COL.COLO4_31481 Corchorus olitorius HOM05D006133 ORTHO05D007855 1.6e-31 140.2 201 46.3
Cpa.g.sc27.45 Carica papaya HOM05D006133 ORTHO05D007855 2.8e-31 139.4 207 43.5
C04p63360 Brassica napus HOM05D006133 ORTHO05D007855 6.3e-31 138.3 206 50.5
Hma1.2p1_0785F.1_g217580 Hydrangea macrophylla HOM05D006133 ORTHO05D007855 1.1e-30 137.5 194 45.4
Gorai.011G027600 Gossypium raimondii HOM05D006133 ORTHO05D007855 1.8e-30 136.7 204 46.1
ECA234G2723 Erigeron canadensis HOM05D006133 ORTHO05D007855 5.3e-30 135.2 200 43.5
Potri.004G042800 Populus trichocarpa HOM05D006133 ORTHO05D007855 5.3e-30 135.2 211 44.5
Migut.M01145 Erythranthe guttata HOM05D006133 ORTHO05D007855 6.9e-30 134.8 186 45.7
Hund23730 Selenicereus undatus HOM05D006133 ORTHO05D007855 9.0e-30 134.4 205 44.4
Hund23731 Selenicereus undatus HOM05D006133 ORTHO05D007855 9.0e-30 134.4 205 44.4
CSS0047692 Camellia sinensis var. sinensis HOM05D006133 ORTHO05D007855 1.5e-29 133.7 184 45.7
Dinv40551 Davidia involucrata HOM05D006133 ORTHO05D007855 2.0e-29 133.3 186 45.7
BraA04t18104Z Brassica rapa HOM05D006133 ORTHO05D007855 2.6e-29 132.9 203 46.3
Cc02_g13300 Coffea canephora HOM05D006133 ORTHO05D007855 2.6e-29 132.9 207 42.0
RcHm_v2.0_Chr5g0008281 Rosa chinensis HOM05D006133 ORTHO05D007855 2.6e-29 132.9 196 43.4
AUR62017011 Chenopodium quinoa HOM05D006133 ORTHO05D007855 4.5e-29 132.1 207 44.0
FvH4_3g09320 Fragaria vesca HOM05D006133 ORTHO05D007855 4.5e-29 132.1 199 42.7
Gohir.A10G025600 Gossypium hirsutum HOM05D006133 ORTHO05D007855 4.5e-29 132.1 204 44.6
Prupe.4G046300 Prunus persica HOM05D006133 ORTHO05D007855 4.5e-29 132.1 206 42.7
Haze_06477 Corylus avellana HOM05D006133 ORTHO05D007855 1.3e-28 130.6 203 42.4
Duzib235G0895 Durio zibethinus HOM05D006133 ORTHO05D007855 2.9e-28 129.4 115 59.1
Glyma.13G179800 Glycine max HOM05D006133 ORTHO05D007855 3.8e-28 129.0 202 43.6
FAN16G1924 Fragaria x ananassa HOM05D006133 ORTHO05D007855 5.0e-28 128.6 198 41.9
Cfa000437 Carpinus fangiana HOM05D006133 ORTHO05D007855 6.5e-28 128.3 203 41.9
AUR62014816 Chenopodium quinoa HOM05D006133 ORTHO05D007855 6.5e-28 128.3 207 43.5
Lj4g0021405 Lotus japonicus HOM05D006133 ORTHO05D007855 6.5e-28 128.3 199 43.2
Actinidia05630 Actinidia chinensis HOM05D006133 ORTHO05D007855 1.1e-27 127.5 187 43.9
ClCG03G006010 Citrullus lanatus HOM05D006133 ORTHO05D007855 1.4e-27 127.1 175 45.7
Ciclev10017918m.g Citrus clementina HOM05D006133 ORTHO05D007855 1.9e-27 126.7 115 60.9
MELO3C002599.2 Cucumis melo HOM05D006133 ORTHO05D007855 3.2e-27 125.9 175 45.1
CsaV3_1G012270 Cucumis sativus L. HOM05D006133 ORTHO05D007855 3.2e-27 125.9 175 45.1
Medtr4g088855 Medicago truncatula HOM05D006133 ORTHO05D007855 1.2e-26 124.0 212 42.5
Peaxi162Scf00736g00427 Petunia axillaris HOM05D006133 ORTHO05D007855 1.2e-26 124.0 222 39.6
unitig_22.g6229 Utricularia gibba HOM05D006133 ORTHO05D007855 1.2e-26 124.0 186 44.6
MBI09_g12165_MAGBIO Magnolia biondii HOM05D006133 ORTHO05D007855 1.6e-26 123.6 204 42.2
arahy.Tifrunner.gnm1.ann1.YAJ938 Arachis hypogaea HOM05D006133 ORTHO05D007855 2.1e-26 123.2 114 58.8
Cc01_g03530 Coffea canephora HOM05D006133 ORTHO05D007855 3.5e-26 122.5 115 56.5
PSO478G5317 Papaver somniferum HOM05D006133 ORTHO05D007855 3.5e-26 122.5 205 41.0
Phvul.002G234200 Phaseolus vulgaris HOM05D006133 ORTHO05D007855 3.5e-26 122.5 216 40.7
FAN25G2154 Fragaria x ananassa HOM05D006133 ORTHO05D007855 4.6e-26 122.1 112 58.0
Sc05g0007700 Simmondsia chinensis HOM05D006133 ORTHO05D007855 1.0e-25 120.9 210 41.9
EL10Ac8g20377 Beta vulgaris HOM05D006133 ORTHO05D007855 1.3e-25 120.6 115 57.4
VMungo0251G0712 Vigna mungo HOM05D006133 ORTHO05D007855 1.3e-25 120.6 216 40.3
Ca_18541_v3 Cicer arietinum L. HOM05D006133 ORTHO05D007855 2.3e-25 119.8 175 45.7
FAN21G1061 Fragaria x ananassa HOM05D006133 ORTHO05D007855 2.3e-25 119.8 112 57.1
Glyma.07G196100 Glycine max HOM05D006133 ORTHO05D007855 3.0e-25 119.4 216 39.8
Oeu057904.1 Olea europaea HOM05D006133 ORTHO05D007855 3.9e-25 119.0 213 43.7
PSO478G1675 Papaver somniferum HOM05D006133 ORTHO05D007855 5.1e-25 118.6 205 40.0
FAN11G1298 Fragaria x ananassa HOM05D006133 ORTHO05D007855 6.7e-25 118.2 112 56.2
Rhsim13G0177600 Rhododendron simsii HOM05D006133 ORTHO05D007855 8.7e-25 117.9 230 47.4
TPR.G12027 Trifolium pratense HOM05D006133 ORTHO05D007855 1.5e-24 117.1 212 40.1
Ah.09g237330 Amaranthus hybridus HOM05D006133 ORTHO05D007855 1.1e-22 110.9 115 53.9
Sopen02g023140 Solanum pennellii HOM05D006133 ORTHO05D007855 1.1e-22 110.9 213 38.0
arahy.Tifrunner.gnm1.ann1.Y5A5WX Arachis hypogaea HOM05D006133 ORTHO05D007855 1.4e-22 110.5 213 38.0
TAR628G0719 Trochodendron aralioides HOM05D006133 ORTHO05D007855 1.4e-22 110.5 205 40.0
CSS0042278 Camellia sinensis var. sinensis HOM05D006133 ORTHO05D007855 6.9e-22 108.2 208 38.0
Cc01_g03500 Coffea canephora HOM05D006133 ORTHO05D007855 6.9e-22 108.2 210 39.0
Psat7g113640 Pisum sativum HOM05D006133 ORTHO05D007855 6.9e-22 108.2 86 64.0
CAN.G1164.26 Capsicum annuum HOM05D006133 ORTHO05D007855 4.5e-21 105.5 213 37.1
Lsat_1_v5_gn_4_52940 Lactuca sativa HOM05D006133 ORTHO05D007855 1.0e-20 104.4 200 37.5
PGSC0003DMG400029689 Solanum tuberosum HOM05D006133 ORTHO05D007855 1.0e-20 104.4 213 36.6
ATR0584G083 Amborella trichopoda HOM05D006133 ORTHO05D007855 8.5e-20 101.3 177 39.0
HanXRQChr16g0517711 Helianthus annuus HOM05D006133 ORTHO05D007855 8.5e-20 101.3 196 36.2
Solyc02g078280.3 Solanum lycopersicum HOM05D006133 ORTHO05D007855 4.2e-19 99.0 173 40.5
CDE04G1633 Ceratophyllum demersum HOM05D006133 ORTHO05D007855 9.4e-19 97.8 203 45.3
Zm00001eb063880 Zea mays HOM05D006133 ORTHO05D007855 1.2e-18 97.4 184 37.0
TWI38G1277 Tripterygium wilfordii HOM05D006133 ORTHO05D007855 2.1e-18 96.7 189 40.2
DCAR_028075 Daucus carota HOM05D006133 ORTHO05D007855 6.1e-18 95.1 115 49.6
SMO353G0258 Selaginella moellendorffii HOM05D006133 ORTHO05D007855 6.1e-18 95.1 171 36.3
BcaB02g10593 Brassica carinata HOM05D006133 ORTHO05D007855 8.8e-17 91.3 84 65.5
Nitab4.5_0003432g0010 Nicotiana tabacum HOM05D006133 ORTHO05D007855 2.5e-16 89.7 187 37.4
Nitab4.5_0007940g0050 Nicotiana tabacum HOM05D006133 ORTHO05D007855 1.3e-15 87.4 214 34.1
Os03g0837800 Oryza sativa ssp. japonica HOM05D006133 ORTHO05D007855 2.8e-15 86.3 205 33.2
BraA05t20121Z Brassica rapa HOM05D006133 ORTHO05D007855 3.4e-13 79.3 78 60.3
AagrBONN_evm.TU.Sc2ySwM_228.202 Anthoceros agrestis HOM05D006133 ORTHO05D007855 4.5e-13 79.0 217 29.5
Potri.011G051900 Populus trichocarpa HOM05D006133 ORTHO05D007855 7.7e-13 78.2 211 33.2
SGA_v2.0_scaffold22G09717 Striga asiatica HOM05D006133 ORTHO05D007855 1.3e-12 77.4 60 70.0
A05p11770 Brassica napus HOM05D006133 ORTHO05D007855 1.4e-11 73.9 48 81.2
Nn1g08778 Nelumbo nucifera HOM05D006133 ORTHO05D007855 1.9e-11 73.6 194 33.5
C04p15300 Brassica napus HOM05D006133 ORTHO05D007855 7.2e-11 71.6 45 80.0
Prupe.4G042300 Prunus persica HOM05D006133 ORTHO05D007855 9.4e-11 71.2 69 59.4
Solyc02g078290.4 Solanum lycopersicum HOM05D006133 ORTHO05D007855 1.4e-09 67.4 160 33.1
Mapoly0103s0052 Marchantia polymorpha HOM05D006133 ORTHO05D007855 1.8e-09 67.0 83 41.0
Gohir.D10G026300 Gossypium hirsutum HOM05D006133 ORTHO05D007855 5.1e-09 65.5 158 37.3
Dinv07556 Davidia involucrata HOM05D006133 ORTHO05D007855 1.1e-08 64.3 128 35.9
MD05G1313300 Malus domestica HOM05D006133 ORTHO05D007855 4.4e-08 62.4 149 33.6
Sed0025328 Sechium edule HOM05D006133 ORTHO05D007855 1.3e-07 60.8 157 32.5
Eucgr.B00901 Eucalyptus grandis HOM05D006133 ORTHO05D007855 6.3e-07 58.5 82 43.9
Eucgr.B00955 Eucalyptus grandis HOM05D006133 ORTHO05D007855 8.2e-07 58.2 78 46.2
SGA_v2.0_scaffold499G52489 Striga asiatica HOM05D006133 ORTHO05D007855 4.1e-06 55.8 169 30.8
Lalb_Chr05g0218461 Lupinus albus HOM05D006133 ORTHO05D007855 5.3e-06 55.5 38 73.7


User provided reference genes

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