Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL4G11300 Arabidopsis lyrata HOM05D004217 ORTHO05D005561 5.3e-37 157.1 77 100.0
AL4G39350 Arabidopsis lyrata HOM05D004217 ORTHO05D005561 1.3e-19 99.4 63 77.8
AT2G41350 Arabidopsis thaliana HOM05D004217 ORTHO05D005561 1.3e-19 99.4 63 77.8
CARHR136470 Cardamine hirsuta HOM05D004217 ORTHO05D005561 1.3e-19 99.4 63 79.4
Thhalv10017004m.g Eutrema salsugineum HOM05D004217 ORTHO05D005561 1.3e-19 99.4 63 79.4
BcaB01g03471 Brassica carinata HOM05D004217 ORTHO05D005561 2.9e-19 98.2 63 77.8
BcaC01g05340 Brassica carinata HOM05D004217 ORTHO05D005561 2.9e-19 98.2 63 77.8
A03p23240 Brassica napus HOM05D004217 ORTHO05D005561 2.9e-19 98.2 63 77.8
C03p27740 Brassica napus HOM05D004217 ORTHO05D005561 2.9e-19 98.2 63 77.8
BolC3t15143H Brassica oleracea HOM05D004217 ORTHO05D005561 2.9e-19 98.2 63 77.8
BraA03t11543Z Brassica rapa HOM05D004217 ORTHO05D005561 2.9e-19 98.2 63 77.8
Carub.0004s2365 Capsella rubella HOM05D004217 ORTHO05D005561 2.9e-19 98.2 63 76.2
Sp4g23650 Schrenkiella parvula HOM05D004217 ORTHO05D005561 2.9e-19 98.2 63 77.8
A04p31520 Brassica napus HOM05D004217 ORTHO05D005561 1.9e-18 95.5 65 72.3
BraA04t18609Z Brassica rapa HOM05D004217 ORTHO05D005561 1.9e-18 95.5 65 72.3
Aa31LG5G11710 Aethionema arabicum HOM05D004217 ORTHO05D005561 5.5e-18 94.0 63 73.0
THA.LOC104803276 Tarenaya hassleriana HOM05D004217 ORTHO05D005561 4.6e-17 90.9 63 71.4
THA.LOC104824417 Tarenaya hassleriana HOM05D004217 ORTHO05D005561 1.0e-16 89.7 63 69.8
Cpa.g.sc5.203 Carica papaya HOM05D004217 ORTHO05D005561 1.6e-14 82.4 60 66.7
GSVIVG01034596001 Vitis vinifera HOM05D004217 ORTHO05D005561 3.7e-14 81.3 59 64.4
Ciclev10021431m.g Citrus clementina HOM05D004217 ORTHO05D005561 4.8e-14 80.9 60 63.3
CSS0007689 Camellia sinensis var. sinensis HOM05D004217 ORTHO05D005561 6.3e-14 80.5 59 64.4
Manes.09G007800 Manihot esculenta HOM05D004217 ORTHO05D005561 6.3e-14 80.5 60 63.3
Hma1.2p1_0521F.1_g171490 Hydrangea macrophylla HOM05D004217 ORTHO05D005561 8.2e-14 80.1 60 61.7
Duzib264G1114 Durio zibethinus HOM05D004217 ORTHO05D005561 1.1e-13 79.7 60 63.3
ECA236G0163 Erigeron canadensis HOM05D004217 ORTHO05D005561 1.1e-13 79.7 60 60.0
Potri.006G046200 Populus trichocarpa HOM05D004217 ORTHO05D005561 1.1e-13 79.7 60 63.3
Thecc.01G136700 Theobroma cacao HOM05D004217 ORTHO05D005561 1.4e-13 79.3 60 65.0
COL.COLO4_35807 Corchorus olitorius HOM05D004217 ORTHO05D005561 1.8e-13 79.0 60 63.3
Dinv34387 Davidia involucrata HOM05D004217 ORTHO05D005561 2.4e-13 78.6 60 60.0
RhsimUnG0216700 Rhododendron simsii HOM05D000657 ORTHO05D002092 2.4e-13 78.6 60 60.0
RhsimUnG0219800 Rhododendron simsii HOM05D004217 ORTHO05D005561 2.4e-13 78.6 60 60.0
vmacro07818 Vaccinium macrocarpon HOM05D004217 ORTHO05D005561 2.4e-13 78.6 60 60.0
GSVIVG01027868001 Vitis vinifera HOM05D004217 ORTHO05D005561 2.4e-13 78.6 60 60.0
Cfa016692 Carpinus fangiana HOM05D004217 ORTHO05D005561 3.1e-13 78.2 58 63.8
Sed0000264 Sechium edule HOM05D004217 ORTHO05D005561 3.1e-13 78.2 58 65.5
Haze_19719 Corylus avellana HOM05D004217 ORTHO05D005561 4.1e-13 77.8 58 63.8
Gohir.A02G062500 Gossypium hirsutum HOM05D004217 ORTHO05D005561 4.1e-13 77.8 60 61.7
Gohir.A03G146300 Gossypium hirsutum HOM05D004217 ORTHO05D005561 4.1e-13 77.8 60 61.7
Gohir.A11G057400 Gossypium hirsutum HOM05D004217 ORTHO05D005561 4.1e-13 77.8 60 61.7
Gohir.D11G061600 Gossypium hirsutum HOM05D004217 ORTHO05D005561 4.1e-13 77.8 60 61.7
Gohir.D11G169000 Gossypium hirsutum HOM05D004217 ORTHO05D005561 4.1e-13 77.8 60 61.7
QL07p008431 Quercus lobata HOM05D004217 ORTHO05D005561 4.1e-13 77.8 58 62.1
TAR623G0725 Trochodendron aralioides HOM05D004217 ORTHO05D005561 4.1e-13 77.8 60 60.0
HanXRQChr06g0176941 Helianthus annuus HOM05D004217 ORTHO05D005561 5.3e-13 77.4 60 58.3
HanXRQChr10g0316411 Helianthus annuus HOM05D004217 ORTHO05D005561 5.3e-13 77.4 60 58.3
Actinidia32317 Actinidia chinensis HOM05D004217 ORTHO05D005561 6.9e-13 77.0 60 58.3
Actinidia39171 Actinidia chinensis HOM05D004217 ORTHO05D005561 6.9e-13 77.0 60 58.3
Sabra06G0031800 Salix brachista HOM05D004217 ORTHO05D005561 6.9e-13 77.0 60 60.0
CiPaw.10G038800 Carya illinoinensis HOM05D004217 ORTHO05D005561 9.1e-13 76.6 58 62.1
QL07p008692 Quercus lobata HOM05D004217 ORTHO05D005561 9.1e-13 76.6 58 60.3
Gohir.D03G072900 Gossypium hirsutum HOM05D004217 ORTHO05D005561 1.2e-12 76.3 60 60.0
Gorai.007G066400 Gossypium raimondii HOM05D004217 ORTHO05D005561 1.2e-12 76.3 60 60.0
Gohir.A03G048200 Gossypium hirsutum HOM05D004217 ORTHO05D005561 1.5e-12 75.9 60 60.0
Lsat_1_v5_gn_8_82561 Lactuca sativa HOM05D004217 ORTHO05D005561 1.5e-12 75.9 60 56.7
SGA_v2.0_scaffold273G46404 Striga asiatica HOM05D004217 ORTHO05D005561 1.5e-12 75.9 60 58.3
TWI77G0241 Tripterygium wilfordii HOM05D004217 ORTHO05D005561 1.5e-12 75.9 60 56.7
TAR369G0413 Trochodendron aralioides HOM05D004217 ORTHO05D005561 1.5e-12 75.9 60 58.3
arahy.Tifrunner.gnm1.ann1.35MU93 Arachis hypogaea HOM05D004217 ORTHO05D005561 2.0e-12 75.5 58 63.8
arahy.Tifrunner.gnm1.ann1.GAG45E Arachis hypogaea HOM05D004217 ORTHO05D005561 2.0e-12 75.5 58 63.8
MSTRG.15652 Avicennia marina HOM05D004217 ORTHO05D005561 2.0e-12 75.5 60 60.0
CANSAT78G1576 Cannabis sativa HOM05D004217 ORTHO05D005561 2.0e-12 75.5 58 62.1
Lj2A395G21 Lonicera japonica HOM05D004217 ORTHO05D005561 2.0e-12 75.5 60 58.3
SalBow1G4717 Salvia bowleyana HOM05D004217 ORTHO05D005561 2.0e-12 75.5 60 60.0
Sc13g0001310 Simmondsia chinensis HOM05D004217 ORTHO05D005561 2.0e-12 75.5 60 60.0
Sc13g0001330 Simmondsia chinensis HOM05D004217 ORTHO05D005561 2.0e-12 75.5 60 60.0
TPR.G15791 Trifolium pratense HOM05D004217 ORTHO05D005561 2.0e-12 75.5 58 62.1
CAN.G322.6 Capsicum annuum HOM05D004217 ORTHO05D005561 2.6e-12 75.1 59 57.6
Lalb_Chr04g0255801 Lupinus albus HOM05D004217 ORTHO05D005561 2.6e-12 75.1 58 62.1
Oeu029495.1 Olea europaea HOM05D004217 ORTHO05D005561 2.6e-12 75.1 60 60.0
Peaxi162Scf00620g00012 Petunia axillaris HOM05D004217 ORTHO05D005561 2.6e-12 75.1 59 57.6
Peaxi162Scf01378g00115 Petunia axillaris HOM05D004217 ORTHO05D005561 2.6e-12 75.1 59 57.6
Phvul.004G165200 Phaseolus vulgaris HOM05D004217 ORTHO05D005561 2.6e-12 75.1 58 60.3
Solyc10g079740.2 Solanum lycopersicum HOM05D004217 ORTHO05D005561 2.6e-12 75.1 59 57.6
Sopen10g030370 Solanum pennellii HOM05D004217 ORTHO05D005561 2.6e-12 75.1 59 57.6
PGSC0003DMG400029850 Solanum tuberosum HOM05D004217 ORTHO05D005561 2.6e-12 75.1 59 57.6
TWI53G1501 Tripterygium wilfordii HOM05D004217 ORTHO05D005561 2.6e-12 75.1 60 56.7
Nn7g36831 Nelumbo nucifera HOM05D004217 ORTHO05D005561 3.4e-12 74.7 63 58.7
Nn7g37855 Nelumbo nucifera HOM05D004217 ORTHO05D005561 3.4e-12 74.7 63 58.7
Sc25g0005400 Simmondsia chinensis HOM05D004217 ORTHO05D005561 3.4e-12 74.7 60 60.0
Ah.04g151110 Amaranthus hybridus HOM05D004217 ORTHO05D005561 4.5e-12 74.3 60 58.3
AUR62030333 Chenopodium quinoa HOM05D004217 ORTHO05D005561 4.5e-12 74.3 60 58.3
AUR62031989 Chenopodium quinoa HOM05D004217 ORTHO05D005561 4.5e-12 74.3 60 58.3
Nitab4.5_0000571g0060 Nicotiana tabacum HOM05D004217 ORTHO05D005561 4.5e-12 74.3 59 57.6
Nitab4.5_0000636g0010 Nicotiana tabacum HOM05D004217 ORTHO05D005561 4.5e-12 74.3 59 57.6
Atru.chr1.1483 Acer truncatum HOM05D004217 ORTHO05D005561 5.9e-12 73.9 60 58.3
EL10Ac3g07207 Beta vulgaris HOM05D004217 ORTHO05D005561 5.9e-12 73.9 60 56.7
EL10Ac6g14020 Beta vulgaris HOM05D004217 ORTHO05D005561 5.9e-12 73.9 60 56.7
Eucgr.A00412 Eucalyptus grandis HOM05D004217 ORTHO05D005561 5.9e-12 73.9 59 59.3
Nitab4.5_0001874g0050 Nicotiana tabacum HOM05D004217 ORTHO05D005561 5.9e-12 73.9 59 55.9
TPR.G5939 Trifolium pratense HOM05D004217 ORTHO05D005561 5.9e-12 73.9 58 60.3
Ca_16232_v3 Cicer arietinum L. HOM05D004217 ORTHO05D005561 7.7e-12 73.6 58 60.3
ClCG04G004230 Citrullus lanatus HOM05D004217 ORTHO05D005561 7.7e-12 73.6 58 60.3
MELO3C019047.2 Cucumis melo HOM05D004217 ORTHO05D005561 7.7e-12 73.6 58 60.3
CsaV3_3G041090 Cucumis sativus L. HOM05D004217 ORTHO05D005561 7.7e-12 73.6 58 60.3
CsaV3_4G027820 Cucumis sativus L. HOM05D004217 ORTHO05D005561 7.7e-12 73.6 58 60.3
Migut.K00125 Erythranthe guttata HOM05D004217 ORTHO05D005561 7.7e-12 73.6 60 56.7
unitig_748.g7226 Utricularia gibba HOM05D004217 ORTHO05D005561 7.7e-12 73.6 60 56.7
VMungo0464G0563 Vigna mungo HOM05D004217 ORTHO05D005561 7.7e-12 73.6 58 58.6
Eucgr.A00321 Eucalyptus grandis HOM05D004217 ORTHO05D005561 1.0e-11 73.2 59 59.3
SHI05064 Sapria himalayana HOM05D004217 ORTHO05D005561 1.0e-11 73.2 60 56.7
Gohir.A12G042000 Gossypium hirsutum HOM05D004217 ORTHO05D005561 1.3e-11 72.8 57 61.4
Lj6g0025691 Lotus japonicus HOM05D004217 ORTHO05D005561 1.3e-11 72.8 58 58.6
DCAR_020547 Daucus carota HOM05D004217 ORTHO05D005561 1.7e-11 72.4 59 57.6
DCAR_027531 Daucus carota HOM05D004217 ORTHO05D005561 1.7e-11 72.4 59 57.6
Lalb_Chr17g0341031 Lupinus albus HOM05D004217 ORTHO05D005561 1.7e-11 72.4 58 58.6
Glyma.09G192100 Glycine max HOM05D004217 ORTHO05D005561 2.9e-11 71.6 55 61.8
Glyma.07G084800 Glycine max HOM05D004217 ORTHO05D005561 3.8e-11 71.2 55 61.8
PSO339G2795 Papaver somniferum HOM05D004217 ORTHO05D005561 6.5e-11 70.5 60 55.0
Hund24631 Selenicereus undatus HOM05D004217 ORTHO05D005561 6.5e-11 70.5 60 56.7
Cc06_g18810 Coffea canephora HOM05D004217 ORTHO05D005561 8.5e-11 70.1 60 56.7
Aqoxy2G04056 Aquilegia oxysepala HOM05D004217 ORTHO05D005561 1.4e-10 69.3 59 57.6
Gohir.D11G296900 Gossypium hirsutum HOM05D004217 ORTHO05D005561 1.4e-10 69.3 52 65.4
PSO384G3185 Papaver somniferum HOM05D004217 ORTHO05D005561 1.9e-10 68.9 60 55.0
Actinidia20826 Actinidia chinensis HOM05D004217 ORTHO05D005561 2.5e-10 68.6 59 55.9
MD12G1067200 Malus domestica HOM05D004217 ORTHO05D005561 2.5e-10 68.6 75 49.3
Medtr3g079220 Medicago truncatula HOM05D004217 ORTHO05D005561 2.5e-10 68.6 58 56.9
CDE07G0389 Ceratophyllum demersum HOM05D004217 ORTHO05D005561 3.2e-10 68.2 58 56.9
FvH4_6g25170 Fragaria vesca HOM05D004217 ORTHO05D005561 7.2e-10 67.0 55 60.0
FAN09G3751 Fragaria x ananassa HOM05D004217 ORTHO05D005561 7.2e-10 67.0 55 60.0
FAN14G1007 Fragaria x ananassa HOM05D004217 ORTHO05D005561 7.2e-10 67.0 55 60.0
ATR0580G123 Amborella trichopoda HOM05D004217 ORTHO05D005561 1.2e-09 66.2 59 50.8
MBI15_g40529_MAGBIO Magnolia biondii HOM05D004217 ORTHO05D005561 1.2e-09 66.2 60 53.3
MD14G1084500 Malus domestica HOM05D004217 ORTHO05D005561 1.6e-09 65.9 55 60.0
RcHm_v2.0_Chr2g0125061 Rosa chinensis HOM05D004217 ORTHO05D005561 1.6e-09 65.9 55 60.0
vmacro08529 Vaccinium macrocarpon HOM05D004217 ORTHO05D005561 1.6e-09 65.9 58 53.4
CDE04G1366 Ceratophyllum demersum HOM05D004217 ORTHO05D005561 2.1e-09 65.5 58 55.2
Prupe.7G043700 Prunus persica HOM05D004217 ORTHO05D005561 2.1e-09 65.5 55 58.2
MD12G1092800 Malus domestica HOM05D004217 ORTHO05D005561 2.7e-09 65.1 55 60.0
MBI14_g19459_MAGBIO Magnolia biondii HOM05D004217 ORTHO05D005561 3.6e-09 64.7 60 51.7
Rhsim04G0175000 Rhododendron simsii HOM05D004217 ORTHO05D005561 1.0e-08 63.2 59 52.5
PGR142G4280 Punica granatum HOM05D004217 ORTHO05D005561 3.0e-08 61.6 59 52.5
Carub.0004s0112 Capsella rubella HOM05D004217 ORTHO05D005561 3.9e-08 61.2 68 51.5
CSS0039334 Camellia sinensis var. sinensis HOM05D004217 ORTHO05D005561 6.7e-08 60.5 59 50.8
Pp3c1_31980 Physcomitrium patens HOM05D004217 ORTHO05D005561 2.0e-07 58.9 58 50.0
Peaxi162Scf01233g00007 Petunia axillaris HOM05D004217 ORTHO05D005561 4.4e-07 57.8 47 55.3
Psat5g112680 Pisum sativum HOM05D004217 ORTHO05D005561 5.7e-07 57.4 58 44.8
SalBow6G4102 Salvia bowleyana HOM05D004217 ORTHO05D005561 9.7e-07 56.6 60 43.3
SMO118G0157 Selaginella moellendorffii HOM05D004217 ORTHO05D005561 1.7e-06 55.8 58 48.3
Gohir.A07G124200 Gossypium hirsutum HOM05D004217 ORTHO05D005561 2.2e-06 55.5 60 50.0


User provided reference genes

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