Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL4G10990 Arabidopsis lyrata HOM05D007888 ORTHO05D009976 1.1e-84 316.6 157 100.0
AL4G10980 Arabidopsis lyrata HOM05D007888 ORTHO05D009976 8.2e-69 263.8 155 83.9
AT3G29797 Arabidopsis thaliana HOM05D007888 ORTHO05D009976 2.3e-63 245.7 157 78.3
AT3G30247 Arabidopsis thaliana HOM05D007888 ORTHO05D009976 1.6e-61 239.6 159 76.1
AT2G21655 Arabidopsis thaliana HOM05D007888 ORTHO05D009976 2.8e-61 238.8 157 75.2
AT2G21727 Arabidopsis thaliana HOM05D007888 ORTHO05D009976 8.2e-53 210.7 150 71.3
Sp4g04720 Schrenkiella parvula HOM05D007888 ORTHO05D009976 1.1e-46 190.3 159 66.7
Sp4g04740 Schrenkiella parvula HOM05D007888 ORTHO05D009976 1.7e-45 186.4 159 64.2
Thhalv10000516m.g Eutrema salsugineum HOM05D007888 ORTHO05D009976 4.1e-44 181.8 152 63.8
CARHR112800 Cardamine hirsuta HOM05D007888 ORTHO05D009976 6.3e-37 157.9 149 55.7
AL4G16900 Arabidopsis lyrata HOM05D007888 ORTHO05D009976 1.9e-33 146.4 158 52.5
C01p52860 Brassica napus HOM05D007888 ORTHO05D009976 3.0e-31 139.0 154 46.8
C01p52810 Brassica napus HOM05D007888 ORTHO05D009976 8.8e-31 137.5 154 46.8
C01p52850 Brassica napus HOM05D007888 ORTHO05D009976 1.2e-30 137.1 154 46.8
C01p52830 Brassica napus HOM05D007888 ORTHO05D009976 1.5e-30 136.7 154 46.8
C01p52840 Brassica napus HOM05D007888 ORTHO05D009976 9.7e-30 134.0 154 45.5
BolC1t05218H Brassica oleracea HOM05D007888 ORTHO05D009976 9.7e-30 134.0 154 45.5
BolC1t05223H Brassica oleracea HOM05D007888 ORTHO05D009976 9.7e-30 134.0 154 46.1
C01p52800 Brassica napus HOM05D007888 ORTHO05D009976 1.3e-29 133.7 154 44.8
BolC1t05220H Brassica oleracea HOM05D007888 ORTHO05D009976 1.3e-29 133.7 154 46.1
Sp2g20590 Schrenkiella parvula HOM05D007888 ORTHO05D009976 1.7e-29 133.3 149 46.3
C01p52820 Brassica napus HOM05D007888 ORTHO05D009976 2.8e-29 132.5 154 46.1
BolC1t05219H Brassica oleracea HOM05D007888 ORTHO05D009976 2.8e-29 132.5 154 46.1
BolC1t05221H Brassica oleracea HOM05D007888 ORTHO05D009976 2.8e-29 132.5 154 44.8
BcaC09g48239 Brassica carinata HOM05D007888 ORTHO05D009976 3.7e-29 132.1 154 45.5
AT2G25482 Arabidopsis thaliana HOM05D007888 ORTHO05D009976 4.8e-29 131.7 158 44.9
BcaB04g21393 Brassica carinata HOM05D007888 ORTHO05D009976 8.2e-29 131.0 155 45.8
BolC1t05222H Brassica oleracea HOM05D007888 ORTHO05D009976 8.2e-29 131.0 157 45.2
Carub.0004s0516 Capsella rubella HOM05D007888 ORTHO05D009976 5.3e-28 128.3 158 45.6
Sp4g04710 Schrenkiella parvula HOM05D007888 ORTHO05D009976 7.0e-28 127.9 136 55.1
BcaC09g48240 Brassica carinata HOM05D007888 ORTHO05D009976 1.2e-27 127.1 154 44.8
BcaC09g48237 Brassica carinata HOM05D007888 ORTHO05D009976 1.6e-27 126.7 154 44.2
BcaB04g21088 Brassica carinata HOM05D007888 ORTHO05D009976 2.7e-27 125.9 150 46.0
BcaC09g48217 Brassica carinata HOM05D007888 ORTHO05D009976 2.7e-27 125.9 157 44.6
BolC1t05261H Brassica oleracea HOM05D007888 ORTHO05D009976 2.7e-27 125.9 157 44.6
Thhalv10005636m.g Eutrema salsugineum HOM05D007888 ORTHO05D009976 5.9e-27 124.8 157 45.2
Carub.0004s0517 Capsella rubella HOM05D007888 ORTHO05D009976 7.7e-27 124.4 158 44.3
BolC1t05231H Brassica oleracea HOM05D007888 ORTHO05D009976 1.7e-26 123.2 155 42.6
BcaC01g00727 Brassica carinata HOM05D007888 ORTHO05D009976 2.9e-26 122.5 151 42.4
BolC1t05244H Brassica oleracea HOM05D007888 ORTHO05D009976 2.9e-26 122.5 155 44.5
C01p52960 Brassica napus HOM05D007888 ORTHO05D009976 3.8e-26 122.1 149 43.6
C01p53020 Brassica napus HOM05D007888 ORTHO05D009976 3.8e-26 122.1 149 42.3
BolC1t05230H Brassica oleracea HOM05D007888 ORTHO05D009976 3.8e-26 122.1 153 41.8
BolC1t05234H Brassica oleracea HOM05D007888 ORTHO05D009976 3.8e-26 122.1 149 43.6
C01p52940 Brassica napus HOM05D007888 ORTHO05D009976 5.0e-26 121.7 149 43.6
C01p53000 Brassica napus HOM05D007888 ORTHO05D009976 8.5e-26 120.9 155 44.5
BolC1t05237H Brassica oleracea HOM05D007888 ORTHO05D009976 8.5e-26 120.9 148 42.6
BolC1t05232H Brassica oleracea HOM05D007888 ORTHO05D009976 1.1e-25 120.6 149 43.0
BolC1t05233H Brassica oleracea HOM05D007888 ORTHO05D009976 1.1e-25 120.6 149 43.0
BolC1t05235H Brassica oleracea HOM05D007888 ORTHO05D009976 1.1e-25 120.6 149 43.0
BcaC09g48231 Brassica carinata HOM05D007888 ORTHO05D009976 1.9e-25 119.8 153 40.5
C01p52980 Brassica napus HOM05D007888 ORTHO05D009976 1.9e-25 119.8 154 42.2
BolC1t05238H Brassica oleracea HOM05D007888 ORTHO05D009976 3.2e-25 119.0 154 42.2
BolC1t05236H Brassica oleracea HOM05D007888 ORTHO05D009976 5.5e-25 118.2 148 41.9
BcaC07g40200 Brassica carinata HOM05D007888 ORTHO05D009976 7.2e-25 117.9 153 42.5
AL3G11060 Arabidopsis lyrata HOM05D007888 ORTHO05D009976 2.3e-23 112.8 148 41.2
C01p52790 Brassica napus HOM05D007888 ORTHO05D009976 6.8e-23 111.3 134 45.5
BcaC09g48238 Brassica carinata HOM05D007888 ORTHO05D009976 1.2e-22 110.5 146 41.8
Carub.0006s2294 Capsella rubella HOM05D007888 ORTHO05D009976 1.2e-22 110.5 155 40.0
C01p53150 Brassica napus HOM05D007888 ORTHO05D009976 1.5e-22 110.2 134 44.8
BolC1t05217H Brassica oleracea HOM05D007888 ORTHO05D009976 3.4e-22 109.0 135 45.2
AT3G01185 Arabidopsis thaliana HOM05D007888 ORTHO05D009976 5.7e-22 108.2 149 38.9
Carub.0004s0518 Capsella rubella HOM05D007888 ORTHO05D009976 9.8e-22 107.5 119 44.5
Sp4g04700 Schrenkiella parvula HOM05D007888 ORTHO05D009976 4.1e-20 102.1 115 52.2
BcaB03g11708 Brassica carinata HOM05D007888 ORTHO05D009976 1.2e-19 100.5 149 36.2
Carub.0003s0096 Capsella rubella HOM05D007888 ORTHO05D009976 2.9e-18 95.9 156 35.3
Thhalv10005295m.g Eutrema salsugineum HOM05D007888 ORTHO05D009976 4.2e-17 92.0 156 37.2
THA.LOC104813239 Tarenaya hassleriana HOM05D007923 ORTHO05D009651 9.5e-17 90.9 151 30.5
CARHR112790 Cardamine hirsuta HOM05D007888 ORTHO05D009976 3.6e-16 89.0 78 56.4
C01p52970 Brassica napus HOM05D007888 ORTHO05D009976 2.3e-15 86.3 84 47.6
THA.LOC104817628 Tarenaya hassleriana HOM05D007923 ORTHO05D009976 3.0e-15 85.9 152 28.3
C01p53160 Brassica napus HOM05D007888 ORTHO05D009976 6.8e-15 84.7 73 50.7
A06p13980 Brassica napus HOM05D007888 ORTHO05D009976 9.8e-14 80.9 112 42.9
AL1G53940 Arabidopsis lyrata HOM05D007923 ORTHO05D009651 2.2e-13 79.7 147 31.3
THA.LOC104799715 Tarenaya hassleriana HOM05D007923 ORTHO05D009651 6.3e-13 78.2 104 33.7
THA.LOC104810160 Tarenaya hassleriana HOM05D007923 ORTHO05D009651 4.5e-11 72.0 138 26.1
AL3G23600 Arabidopsis lyrata HOM05D007923 ORTHO05D009651 5.9e-11 71.6 161 31.1
Carub.0008s0480 Capsella rubella HOM05D007923 ORTHO05D009651 7.8e-11 71.2 163 27.6
AT1G45190 Arabidopsis thaliana HOM05D007923 ORTHO05D009651 2.3e-10 69.7 129 32.6
CARHR086550 Cardamine hirsuta HOM05D007923 ORTHO05D009651 2.3e-10 69.7 165 24.8
AT3G11990 Arabidopsis thaliana HOM05D007923 ORTHO05D009651 3.8e-10 68.9 114 34.2
Thhalv10022160m.g Eutrema salsugineum HOM05D007923 ORTHO05D009651 1.1e-09 67.4 164 28.0
AT1G47470 Arabidopsis thaliana HOM05D007923 ORTHO05D009651 5.6e-09 65.1 164 29.3
CARHR103140 Cardamine hirsuta HOM05D007923 ORTHO05D009651 7.3e-09 64.7 151 28.5
BcaB04g20407 Brassica carinata HOM05D007923 ORTHO05D009651 2.1e-08 63.2 122 28.7
CARHR043170 Cardamine hirsuta HOM05D007923 ORTHO05D009651 6.1e-08 61.6 147 25.9
AL5G13880 Arabidopsis lyrata HOM05D007923 ORTHO05D009651 1.0e-07 60.8 150 25.3
AL9U10560 Arabidopsis lyrata HOM05D007923 ORTHO05D009651 1.0e-07 60.8 148 29.1
Carub.0001s4211 Capsella rubella HOM05D007923 ORTHO05D009651 1.0e-07 60.8 130 29.2
Sp1g39520 Schrenkiella parvula HOM05D007923 ORTHO05D009651 1.0e-07 60.8 105 28.6
AL5G13910 Arabidopsis lyrata HOM05D007923 ORTHO05D009651 1.4e-07 60.5 84 32.1
AT5G35405 Arabidopsis thaliana HOM05D007923 ORTHO05D009651 1.4e-07 60.5 148 29.7
Sp3g10220 Schrenkiella parvula HOM05D007923 ORTHO05D009651 1.4e-07 60.5 123 26.0
AT1G52970 Arabidopsis thaliana HOM05D007923 ORTHO05D009651 2.3e-07 59.7 148 27.0
AL5G13890 Arabidopsis lyrata HOM05D007923 ORTHO05D009651 3.0e-07 59.3 150 24.7
AL5G13900 Arabidopsis lyrata HOM05D007923 ORTHO05D009651 4.0e-07 58.9 84 31.0
Thecc.05G151700 Theobroma cacao HOM05D001614 ORTHO05D000988 5.2e-07 58.5 109 26.6
Cpa.g.c39057 Carica papaya HOM05D014073 ORTHO05D014166 1.5e-06 57.0 125 30.4
AL5G13870 Arabidopsis lyrata HOM05D007923 ORTHO05D009651 2.0e-06 56.6 151 25.2
AT2G04037 Arabidopsis thaliana HOM05D007923 ORTHO05D009651 2.0e-06 56.6 154 27.9
AL1G61300 Arabidopsis lyrata HOM05D007923 ORTHO05D009651 2.6e-06 56.2 134 26.9
AT4G13261 Arabidopsis thaliana HOM05D007923 ORTHO05D009651 2.6e-06 56.2 148 29.1
AT4G13263 Arabidopsis thaliana HOM05D007923 ORTHO05D009651 2.6e-06 56.2 148 28.4
AT2G04031 Arabidopsis thaliana HOM05D007923 ORTHO05D009651 4.4e-06 55.5 125 25.6
Cpa.g.c23646 Carica papaya HOM05D014073 ORTHO05D014166 7.5e-06 54.7 119 30.3
Cpa.g.c23646.1 Carica papaya HOM05D014073 ORTHO05D014166 7.5e-06 54.7 119 30.3
Cpa.g.c23646.2 Carica papaya HOM05D014073 ORTHO05D014166 7.5e-06 54.7 119 30.3
Cpa.g.c23646.4 Carica papaya HOM05D014073 ORTHO05D014166 7.5e-06 54.7 119 30.3
Cpa.g.c25391 Carica papaya HOM05D014073 ORTHO05D014166 7.5e-06 54.7 119 30.3
Cpa.g.c35364 Carica papaya HOM05D014073 ORTHO05D014166 7.5e-06 54.7 119 31.1
Cpa.g.c23646.6 Carica papaya HOM05D014073 ORTHO05D014166 9.8e-06 54.3 119 30.3
Cpa.g.c23646.7 Carica papaya HOM05D014073 ORTHO05D014166 9.8e-06 54.3 119 30.3
RcHm_v2.0_Chr2g0133141 Rosa chinensis HOM05D012941 ORTHO05D009651 9.8e-06 54.3 159 26.4


User provided reference genes

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