Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL4G10980 Arabidopsis lyrata HOM05D007888 ORTHO05D009976 5.6e-86 320.9 157 100.0
AL4G10990 Arabidopsis lyrata HOM05D007888 ORTHO05D009976 2.1e-69 265.8 155 83.9
AT2G21655 Arabidopsis thaliana HOM05D007888 ORTHO05D009976 4.9e-66 254.6 155 78.1
AT3G29797 Arabidopsis thaliana HOM05D007888 ORTHO05D009976 4.6e-64 248.1 155 77.4
AT3G30247 Arabidopsis thaliana HOM05D007888 ORTHO05D009976 8.7e-63 243.8 157 76.4
AT2G21727 Arabidopsis thaliana HOM05D007888 ORTHO05D009976 1.6e-56 223.0 150 73.3
Sp4g04720 Schrenkiella parvula HOM05D007888 ORTHO05D009976 1.2e-48 196.8 156 63.5
Thhalv10000516m.g Eutrema salsugineum HOM05D007888 ORTHO05D009976 1.0e-47 193.7 152 62.5
Sp4g04740 Schrenkiella parvula HOM05D007888 ORTHO05D009976 3.3e-46 188.7 156 59.6
AL4G16900 Arabidopsis lyrata HOM05D007888 ORTHO05D009976 3.1e-36 155.6 156 53.8
CARHR112800 Cardamine hirsuta HOM05D007888 ORTHO05D009976 7.0e-36 154.5 149 51.7
AT2G25482 Arabidopsis thaliana HOM05D007888 ORTHO05D009976 2.5e-33 146.0 156 47.4
Sp2g20590 Schrenkiella parvula HOM05D007888 ORTHO05D009976 1.5e-30 136.7 149 45.6
C01p52810 Brassica napus HOM05D007888 ORTHO05D009976 3.3e-30 135.6 154 46.1
Carub.0004s0516 Capsella rubella HOM05D007888 ORTHO05D009976 3.3e-30 135.6 156 46.2
C01p52860 Brassica napus HOM05D007888 ORTHO05D009976 5.7e-30 134.8 154 45.5
BolC1t05244H Brassica oleracea HOM05D007888 ORTHO05D009976 9.7e-30 134.0 154 43.5
BcaB04g21393 Brassica carinata HOM05D007888 ORTHO05D009976 1.3e-29 133.7 154 44.8
BcaC09g48217 Brassica carinata HOM05D007888 ORTHO05D009976 1.3e-29 133.7 156 42.3
BolC1t05261H Brassica oleracea HOM05D007888 ORTHO05D009976 1.3e-29 133.7 156 42.3
C01p52850 Brassica napus HOM05D007888 ORTHO05D009976 2.2e-29 132.9 154 45.5
C01p52830 Brassica napus HOM05D007888 ORTHO05D009976 2.8e-29 132.5 154 45.5
C01p53000 Brassica napus HOM05D007888 ORTHO05D009976 2.8e-29 132.5 154 43.5
BolC1t05222H Brassica oleracea HOM05D007888 ORTHO05D009976 3.7e-29 132.1 156 44.2
BolC1t05223H Brassica oleracea HOM05D007888 ORTHO05D009976 4.8e-29 131.7 154 45.5
Sp4g04710 Schrenkiella parvula HOM05D007888 ORTHO05D009976 4.8e-29 131.7 123 54.5
Carub.0004s0517 Capsella rubella HOM05D007888 ORTHO05D009976 1.1e-28 130.6 156 44.9
C01p52840 Brassica napus HOM05D007888 ORTHO05D009976 1.8e-28 129.8 154 44.2
BcaB04g21088 Brassica carinata HOM05D007888 ORTHO05D009976 2.4e-28 129.4 149 44.3
BolC1t05220H Brassica oleracea HOM05D007888 ORTHO05D009976 2.4e-28 129.4 154 44.8
Thhalv10005636m.g Eutrema salsugineum HOM05D007888 ORTHO05D009976 3.1e-28 129.0 157 43.9
BcaC09g48239 Brassica carinata HOM05D007888 ORTHO05D009976 5.3e-28 128.3 158 44.9
BolC1t05221H Brassica oleracea HOM05D007888 ORTHO05D009976 5.3e-28 128.3 154 43.5
BolC1t05230H Brassica oleracea HOM05D007888 ORTHO05D009976 5.3e-28 128.3 157 43.3
BolC1t05231H Brassica oleracea HOM05D007888 ORTHO05D009976 5.3e-28 128.3 154 42.2
BolC1t05218H Brassica oleracea HOM05D007888 ORTHO05D009976 7.0e-28 127.9 154 43.5
C01p52800 Brassica napus HOM05D007888 ORTHO05D009976 9.1e-28 127.5 154 42.9
C01p52820 Brassica napus HOM05D007888 ORTHO05D009976 1.2e-27 127.1 158 44.9
BolC1t05219H Brassica oleracea HOM05D007888 ORTHO05D009976 1.2e-27 127.1 158 44.9
C01p52980 Brassica napus HOM05D007888 ORTHO05D009976 3.5e-27 125.6 158 44.3
BolC1t05238H Brassica oleracea HOM05D007888 ORTHO05D009976 3.5e-27 125.6 158 44.3
BolC1t05232H Brassica oleracea HOM05D007888 ORTHO05D009976 4.5e-27 125.2 148 42.6
BolC1t05233H Brassica oleracea HOM05D007888 ORTHO05D009976 4.5e-27 125.2 148 41.9
BcaC01g00727 Brassica carinata HOM05D007888 ORTHO05D009976 5.9e-27 124.8 150 40.7
BcaC09g48231 Brassica carinata HOM05D007888 ORTHO05D009976 7.7e-27 124.4 157 42.0
C01p52960 Brassica napus HOM05D007888 ORTHO05D009976 7.7e-27 124.4 148 41.9
BolC1t05234H Brassica oleracea HOM05D007888 ORTHO05D009976 7.7e-27 124.4 148 41.9
C01p52940 Brassica napus HOM05D007888 ORTHO05D009976 1.0e-26 124.0 148 41.9
BcaC09g48240 Brassica carinata HOM05D007888 ORTHO05D009976 2.2e-26 122.9 154 43.5
BolC1t05235H Brassica oleracea HOM05D007888 ORTHO05D009976 2.2e-26 122.9 148 41.2
BcaC07g40200 Brassica carinata HOM05D007888 ORTHO05D009976 3.8e-26 122.1 153 42.5
BcaC09g48237 Brassica carinata HOM05D007888 ORTHO05D009976 6.5e-26 121.3 154 42.2
BolC1t05237H Brassica oleracea HOM05D007888 ORTHO05D009976 1.1e-25 120.6 148 41.2
C01p53020 Brassica napus HOM05D007888 ORTHO05D009976 2.5e-25 119.4 149 39.6
BolC1t05236H Brassica oleracea HOM05D007888 ORTHO05D009976 3.6e-24 115.5 148 39.9
C01p53150 Brassica napus HOM05D007888 ORTHO05D009976 1.0e-23 114.0 134 44.0
Carub.0006s2294 Capsella rubella HOM05D007888 ORTHO05D009976 1.5e-22 110.2 153 39.2
AL3G11060 Arabidopsis lyrata HOM05D007888 ORTHO05D009976 2.6e-22 109.4 144 38.2
Carub.0003s0096 Capsella rubella HOM05D007888 ORTHO05D009976 4.4e-22 108.6 154 37.0
Carub.0004s0518 Capsella rubella HOM05D007888 ORTHO05D009976 4.4e-22 108.6 117 42.7
Sp4g04700 Schrenkiella parvula HOM05D007888 ORTHO05D009976 4.4e-22 108.6 114 50.9
BcaC09g48238 Brassica carinata HOM05D007888 ORTHO05D009976 3.7e-21 105.5 146 39.7
C01p52790 Brassica napus HOM05D007888 ORTHO05D009976 3.7e-21 105.5 142 42.3
BcaB03g11708 Brassica carinata HOM05D007888 ORTHO05D009976 4.8e-21 105.1 148 35.8
BolC1t05217H Brassica oleracea HOM05D007888 ORTHO05D009976 1.8e-20 103.2 143 42.0
Thhalv10005295m.g Eutrema salsugineum HOM05D007888 ORTHO05D009976 2.0e-19 99.8 157 37.6
AT3G01185 Arabidopsis thaliana HOM05D007888 ORTHO05D009976 5.0e-18 95.1 144 34.0
BcaB07g29934 Brassica carinata HOM05D007888 ORTHO05D009976 8.6e-18 94.4 159 35.8
A02p39970 Brassica napus HOM05D007888 ORTHO05D009976 1.1e-17 94.0 151 37.1
BraA02t08959Z Brassica rapa HOM05D007888 ORTHO05D009976 1.1e-17 94.0 151 37.1
BcaC03g17926 Brassica carinata HOM05D007888 ORTHO05D009976 1.9e-17 93.2 151 37.7
C02p59850 Brassica napus HOM05D007888 ORTHO05D009976 1.9e-17 93.2 151 37.7
BolC2t12043H Brassica oleracea HOM05D007888 ORTHO05D009976 1.9e-17 93.2 151 37.7
C01p52970 Brassica napus HOM05D007888 ORTHO05D009976 2.1e-16 89.7 80 47.5
THA.LOC104813239 Tarenaya hassleriana HOM05D007923 ORTHO05D009651 4.7e-16 88.6 151 30.5
THA.LOC104817628 Tarenaya hassleriana HOM05D007923 ORTHO05D009976 1.4e-15 87.0 150 27.3
CARHR112790 Cardamine hirsuta HOM05D007888 ORTHO05D009976 1.8e-15 86.7 78 52.6
C01p53160 Brassica napus HOM05D007888 ORTHO05D009976 4.0e-15 85.5 73 49.3
A06p13980 Brassica napus HOM05D007888 ORTHO05D009976 2.8e-13 79.3 111 38.7
AL1G53940 Arabidopsis lyrata HOM05D007923 ORTHO05D009651 3.7e-13 79.0 147 29.9
THA.LOC104799715 Tarenaya hassleriana HOM05D007923 ORTHO05D009651 4.9e-13 78.6 104 34.6
AT1G45190 Arabidopsis thaliana HOM05D007923 ORTHO05D009651 1.2e-11 73.9 128 30.5
AL3G23600 Arabidopsis lyrata HOM05D007923 ORTHO05D009651 2.7e-11 72.8 161 29.2
THA.LOC104810160 Tarenaya hassleriana HOM05D007923 ORTHO05D009651 4.5e-11 72.0 138 25.4
AT1G47470 Arabidopsis thaliana HOM05D007923 ORTHO05D009651 5.9e-11 71.6 99 32.3
Carub.0008s0480 Capsella rubella HOM05D007923 ORTHO05D009651 5.9e-11 71.6 163 24.5
CARHR086550 Cardamine hirsuta HOM05D007923 ORTHO05D009651 1.3e-10 70.5 116 29.3
AT3G11990 Arabidopsis thaliana HOM05D007923 ORTHO05D009651 1.7e-10 70.1 99 31.3
AT1G52970 Arabidopsis thaliana HOM05D007923 ORTHO05D009651 5.0e-10 68.6 148 29.1
Sp1g39520 Schrenkiella parvula HOM05D007923 ORTHO05D009651 1.9e-09 66.6 105 28.6
AL9U10560 Arabidopsis lyrata HOM05D007923 ORTHO05D009651 5.6e-09 65.1 148 28.4
CARHR103140 Cardamine hirsuta HOM05D007923 ORTHO05D009651 5.6e-09 65.1 110 29.1
Thecc.05G151700 Theobroma cacao HOM05D001614 ORTHO05D000988 9.5e-09 64.3 109 28.4
Carub.0001s4211 Capsella rubella HOM05D007923 ORTHO05D009651 1.2e-08 63.9 127 29.9
BcaB04g20407 Brassica carinata HOM05D007923 ORTHO05D009651 2.1e-08 63.2 109 27.5
THA.LOC104824530 Tarenaya hassleriana HOM05D007923 ORTHO05D009651 2.1e-08 63.2 111 26.1
AL1G61300 Arabidopsis lyrata HOM05D007923 ORTHO05D009651 3.6e-08 62.4 92 29.3
CARHR043170 Cardamine hirsuta HOM05D007923 ORTHO05D009651 3.6e-08 62.4 110 27.3
Thhalv10012072m.g Eutrema salsugineum HOM05D007923 ORTHO05D009651 3.6e-08 62.4 128 26.6
AT5G35405 Arabidopsis thaliana HOM05D007923 ORTHO05D009651 4.7e-08 62.0 148 28.4
C01p52920 Brassica napus HOM05D007888 ORTHO05D009976 1.4e-07 60.5 48 54.2
C01p52930 Brassica napus HOM05D007888 ORTHO05D009976 1.4e-07 60.5 48 54.2
C01p52950 Brassica napus HOM05D007888 ORTHO05D009976 1.4e-07 60.5 48 54.2
Cpa.g.c39057 Carica papaya HOM05D014073 ORTHO05D014166 1.8e-07 60.1 116 28.4
CARHR179580 Cardamine hirsuta HOM05D007923 ORTHO05D009651 2.3e-07 59.7 90 27.8
Cpa.g.c35364 Carica papaya HOM05D014073 ORTHO05D014166 5.2e-07 58.5 110 29.1
AT4G13261 Arabidopsis thaliana HOM05D007923 ORTHO05D009651 8.9e-07 57.8 148 27.7
AT4G13263 Arabidopsis thaliana HOM05D007923 ORTHO05D009651 8.9e-07 57.8 148 27.0
Cpa.g.c23646 Carica papaya HOM05D014073 ORTHO05D014166 8.9e-07 57.8 110 28.2
Cpa.g.c23646.1 Carica papaya HOM05D014073 ORTHO05D014166 8.9e-07 57.8 110 28.2
Cpa.g.c23646.2 Carica papaya HOM05D014073 ORTHO05D014166 8.9e-07 57.8 110 28.2
Cpa.g.c23646.4 Carica papaya HOM05D014073 ORTHO05D014166 8.9e-07 57.8 110 28.2
Cpa.g.c25391 Carica papaya HOM05D014073 ORTHO05D014166 8.9e-07 57.8 110 28.2
Cpa.g.c23646.6 Carica papaya HOM05D014073 ORTHO05D014166 1.2e-06 57.4 110 28.2
Cpa.g.c23646.7 Carica papaya HOM05D014073 ORTHO05D014166 1.2e-06 57.4 110 28.2
AT2G04037 Arabidopsis thaliana HOM05D007923 ORTHO05D009651 1.5e-06 57.0 123 28.5
Sp3g10220 Schrenkiella parvula HOM05D007923 ORTHO05D009651 2.0e-06 56.6 100 23.0
AT2G04031 Arabidopsis thaliana HOM05D007923 ORTHO05D009651 3.4e-06 55.8 111 26.1
Duzib268G1388 Durio zibethinus HOM05D002073 ORTHO05D001803 5.8e-06 55.1 92 34.8


User provided reference genes

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