Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL4G10420 Arabidopsis lyrata HOM05D006147 ORTHO05D007501 1.6e-197 692.6 351 100.0
CARHR112150 Cardamine hirsuta HOM05D006147 ORTHO05D007501 4.6e-189 664.5 351 94.9
AT2G21280 Arabidopsis thaliana HOM05D006147 ORTHO05D007501 6.7e-188 660.6 351 95.7
Carub.0004s0032 Capsella rubella HOM05D006147 ORTHO05D007501 1.5e-187 659.4 352 94.9
Sp4g00470 Schrenkiella parvula HOM05D006147 ORTHO05D007501 2.4e-185 652.1 351 92.9
Thhalv10000221m.g Eutrema salsugineum HOM05D006147 ORTHO05D007501 2.7e-181 638.6 351 90.9
A04p16060 Brassica napus HOM05D006147 ORTHO05D007501 6.1e-181 637.5 353 90.9
C04p50520 Brassica napus HOM05D006147 ORTHO05D007501 2.8e-178 628.6 353 90.7
Aa31LG7G15210 Aethionema arabicum HOM05D006147 ORTHO05D007501 4.8e-178 627.9 351 88.6
BcaC02g08802 Brassica carinata HOM05D006147 ORTHO05D007501 2.4e-177 625.5 353 90.4
BolC4t26650H Brassica oleracea HOM05D006147 ORTHO05D007501 2.4e-177 625.5 353 90.4
THA.LOC104804110 Tarenaya hassleriana HOM05D006147 ORTHO05D007501 5.0e-159 564.7 352 81.0
COL.COLO4_26048 Corchorus olitorius HOM05D006147 ORTHO05D007501 7.2e-158 560.8 349 77.9
Cpa.g.sc150.15 Carica papaya HOM05D006147 ORTHO05D007501 5.2e-156 554.7 351 77.5
Gohir.A03G199400 Gossypium hirsutum HOM05D006147 ORTHO05D007501 6.7e-156 554.3 351 78.3
Gohir.D02G220700 Gossypium hirsutum HOM05D006147 ORTHO05D007501 8.8e-156 553.9 351 78.3
Thecc.02G074800 Theobroma cacao HOM05D006147 ORTHO05D007501 4.8e-154 548.1 349 76.2
TWI31G1450 Tripterygium wilfordii HOM05D006147 ORTHO05D007501 4.1e-153 545.0 353 76.5
MD10G1062800 Malus domestica HOM05D006147 ORTHO05D007501 2.0e-152 542.7 350 76.3
Eucgr.G01732 Eucalyptus grandis HOM05D006147 ORTHO05D007501 1.0e-151 540.4 346 77.2
MD05G1055500 Malus domestica HOM05D006147 ORTHO05D007501 2.9e-151 538.9 346 75.7
Duzib248G0035 Durio zibethinus HOM05D006147 ORTHO05D007501 1.1e-150 537.0 391 69.6
Atru.chr5.3146 Acer truncatum HOM05D006147 ORTHO05D007501 1.9e-150 536.2 354 76.3
FAN27G3378 Fragaria x ananassa HOM05D006147 ORTHO05D007501 1.9e-150 536.2 346 75.7
VMungo1127G0575 Vigna mungo HOM05D006147 ORTHO05D007501 4.2e-150 535.0 348 75.3
Potri.009G124800 Populus trichocarpa HOM05D006147 ORTHO05D007501 9.4e-150 533.9 346 76.0
Prupe.8G083600 Prunus persica HOM05D006147 ORTHO05D007501 1.6e-149 533.1 346 75.7
Sabra09G0095800 Salix brachista HOM05D006147 ORTHO05D007501 1.6e-149 533.1 363 73.6
Ca_20936_v3 Cicer arietinum L. HOM05D006147 ORTHO05D007501 4.7e-149 531.6 333 77.2
ECA233G5423 Erigeron canadensis HOM05D006147 ORTHO05D001140 6.1e-149 531.2 345 77.4
Medtr4g072040 Medicago truncatula HOM05D006147 ORTHO05D007501 6.1e-149 531.2 345 75.7
QL11p046465 Quercus lobata HOM05D006147 ORTHO05D007501 6.1e-149 531.2 346 74.9
RcHm_v2.0_Chr6g0267981 Rosa chinensis HOM05D006147 ORTHO05D007501 6.1e-149 531.2 346 74.9
Cfa005114 Carpinus fangiana HOM05D006147 ORTHO05D007501 8.0e-149 530.8 348 75.6
Ciclev10028728m.g Citrus clementina HOM05D006147 ORTHO05D007501 1.8e-148 529.6 353 74.8
vmacro17420 Vaccinium macrocarpon HOM05D006147 ORTHO05D007501 1.8e-148 529.6 371 71.2
TPR.G28159 Trifolium pratense HOM05D006147 ORTHO05D007501 3.0e-148 528.9 348 73.6
Glyma.11G110000 Glycine max HOM05D006147 ORTHO05D007501 5.2e-148 528.1 349 75.1
Aqoxy6G02357 Aquilegia oxysepala HOM05D006147 ORTHO05D007501 1.5e-147 526.6 349 75.9
CSS0016386 Camellia sinensis var. sinensis HOM05D006147 ORTHO05D007501 2.0e-147 526.2 301 84.1
Lalb_Chr03g0025341 Lupinus albus HOM05D006147 ORTHO05D007501 3.4e-147 525.4 344 74.7
Peaxi162Scf00684g00123 Petunia axillaris HOM05D006147 ORTHO05D007501 1.7e-146 523.1 312 80.1
CANSAT11G2690 Cannabis sativa HOM05D006147 ORTHO05D007501 2.8e-146 522.3 344 73.3
CSS0033675 Camellia sinensis var. sinensis HOM05D006147 ORTHO05D007501 4.8e-146 521.5 301 83.1
GSVIVG01024169001 Vitis vinifera HOM05D006147 ORTHO05D007501 6.3e-146 521.2 354 73.2
Sed0012779 Sechium edule HOM05D006147 ORTHO05D007501 1.4e-145 520.0 348 73.9
CAN.G1635.6 Capsicum annuum HOM05D006147 ORTHO05D007501 1.8e-145 519.6 340 74.1
CsaV3_7G000410 Cucumis sativus L. HOM05D006147 ORTHO05D007501 4.1e-145 518.5 343 74.3
Migut.N01278 Erythranthe guttata HOM05D006147 ORTHO05D007501 4.1e-145 518.5 348 73.3
FAN15G0109 Fragaria x ananassa HOM05D006147 ORTHO05D007501 4.1e-145 518.5 349 73.6
Oeu055635.1 Olea europaea HOM05D006147 ORTHO05D007501 5.4e-145 518.1 309 80.9
Actinidia02248 Actinidia chinensis HOM05D006147 ORTHO05D007501 9.1e-145 517.3 301 83.4
Lj3g0027328 Lotus japonicus HOM05D006147 ORTHO05D007501 9.1e-145 517.3 344 74.1
arahy.Tifrunner.gnm1.ann1.S6V2XE Arachis hypogaea HOM05D006147 ORTHO05D007501 2.0e-144 516.2 360 72.5
arahy.Tifrunner.gnm1.ann1.JUX7JJ Arachis hypogaea HOM05D006147 ORTHO05D007501 3.5e-144 515.4 360 72.5
CiPaw.05G073500 Carya illinoinensis HOM05D006147 ORTHO05D007501 3.5e-144 515.4 303 82.8
PGR042G0282 Punica granatum HOM05D006147 ORTHO05D007501 4.5e-144 515.0 355 72.7
TAR628G0064 Trochodendron aralioides HOM05D006147 ORTHO05D007501 4.5e-144 515.0 351 71.8
PGSC0003DMG402031287 Solanum tuberosum HOM05D006147 ORTHO05D007501 5.9e-144 514.6 312 79.2
Glyma.12G036900 Glycine max HOM05D006147 ORTHO05D007501 7.7e-144 514.2 305 81.6
Sopen09g034870 Solanum pennellii HOM05D006147 ORTHO05D007501 1.7e-143 513.1 312 78.8
SalBow3G3875 Salvia bowleyana HOM05D006147 ORTHO05D007501 2.3e-143 512.7 348 73.3
Manes.04G083100 Manihot esculenta HOM05D006147 ORTHO05D007501 8.6e-143 510.8 303 81.8
Solyc09g091970.4 Solanum lycopersicum HOM05D006147 ORTHO05D007501 1.1e-142 510.4 360 71.7
PSO210G6769 Papaver somniferum HOM05D006147 ORTHO05D007501 3.3e-142 508.8 369 69.4
Gorai.005G248600 Gossypium raimondii HOM05D006147 ORTHO05D007501 9.5e-142 507.3 318 78.9
Hund00177 Selenicereus undatus HOM05D006147 ORTHO05D007501 9.5e-142 507.3 324 75.0
Psat7g138880 Pisum sativum HOM05D006147 ORTHO05D007501 8.0e-141 504.2 301 80.1
Phvul.011G038600 Phaseolus vulgaris HOM05D006147 ORTHO05D007501 1.4e-140 503.4 303 80.9
Hund00185 Selenicereus undatus HOM05D006147 ORTHO05D007501 3.0e-140 502.3 310 77.1
AUR62016834 Chenopodium quinoa HOM05D006147 ORTHO05D007501 1.5e-139 500.0 360 69.2
EL10Ac9g21633 Beta vulgaris HOM05D006147 ORTHO05D007501 3.4e-139 498.8 360 68.6
Haze_02237 Corylus avellana HOM05D006147 ORTHO05D007501 1.1e-137 493.8 394 66.0
Lj5C189G13 Lonicera japonica HOM05D006147 ORTHO05D007501 4.1e-137 491.9 325 76.3
AUR62010384 Chenopodium quinoa HOM05D006147 ORTHO05D007501 2.8e-133 479.2 394 62.9
ATR0149G025 Amborella trichopoda HOM05D006147 ORTHO05D007501 3.1e-132 475.7 319 72.4
Os02g0834700 Oryza sativa ssp. japonica HOM05D006147 ORTHO05D007501 2.0e-131 473.0 327 69.4
HPP92_002502 Vanilla planifolia HOM05D006147 ORTHO05D007501 4.4e-131 471.9 304 72.7
Rhsim05G0068100 Rhododendron simsii HOM05D006147 ORTHO05D007501 2.9e-130 469.2 380 65.0
DCAR_003686 Daucus carota HOM05D006147 ORTHO05D007501 1.2e-128 463.8 281 79.4
Sc18g0005390 Simmondsia chinensis HOM05D006147 ORTHO05D007501 1.2e-125 453.8 316 72.2
Lsat_1_v5_gn_8_127980 Lactuca sativa HOM05D006147 ORTHO05D007501 2.0e-123 446.4 356 67.1
CDE02G0092 Ceratophyllum demersum HOM05D006147 ORTHO05D007501 2.6e-123 446.0 328 66.5
ClCG02G004540 Citrullus lanatus HOM05D006147 ORTHO05D007501 2.2e-122 443.0 341 65.4
Pp3c7_11090 Physcomitrium patens HOM05D006147 ORTHO05D007501 1.9e-121 439.9 317 64.7
Pp3c7_11100 Physcomitrium patens HOM05D006147 ORTHO05D007501 1.9e-121 439.9 317 64.7
MELO3C002785.2 Cucumis melo HOM05D006147 ORTHO05D007501 2.7e-120 436.0 292 73.6
Mapoly0021s0030 Marchantia polymorpha HOM05D006147 ORTHO05D007501 2.7e-120 436.0 305 66.2
Nitab4.5_0001154g0060 Nicotiana tabacum HOM05D006147 ORTHO05D007501 4.3e-118 428.7 310 69.0
SMO146G0042 Selaginella moellendorffii HOM05D006147 ORTHO05D007501 3.1e-116 422.5 300 65.0
Zm00001eb259680 Zea mays HOM05D006147 ORTHO05D007501 2.2e-114 416.4 305 67.2
PSO170G3006 Papaver somniferum HOM05D006147 ORTHO05D007501 2.5e-110 402.9 369 59.6
Cc02_g16890 Coffea canephora HOM05D006147 ORTHO05D007501 7.1e-105 384.8 268 73.1
unitig_899.g15602 Utricularia gibba HOM05D006147 ORTHO05D007501 3.1e-100 369.4 280 66.1
Cre05.g233305 Chlamydomonas reinhardtii HOM05D006147 ORTHO05D007501 3.5e-96 355.9 316 54.7
Dinv41999 Davidia involucrata HOM05D006147 ORTHO05D007501 1.7e-95 353.6 250 71.6
MCO05G212 Micromonas commoda HOM05D006147 ORTHO05D007501 2.9e-90 336.3 308 52.3
SGA_v2.0_scaffold80G25875 Striga asiatica HOM05D006147 ORTHO05D007501 9.6e-86 321.2 258 62.8
Nn6g32256 Nelumbo nucifera HOM05D006147 ORTHO05D007501 2.6e-83 313.2 243 67.5
Nitab4.5_0001370g0020 Nicotiana tabacum HOM05D006147 ORTHO05D007501 4.5e-83 312.4 184 82.1
MCO16G248 Micromonas commoda HOM05D006147 ORTHO05D007501 1.1e-81 307.8 309 52.1
FvH4_2g10480 Fragaria vesca HOM05D006147 ORTHO05D007501 3.0e-79 299.7 226 67.3
AUR62040654 Chenopodium quinoa HOM05D006147 ORTHO05D007501 2.5e-78 296.6 303 55.1
PRCOL_00000238 Prasinoderma coloniale HOM05D006147 ORTHO05D007501 7.4e-78 295.0 243 59.7
arahy.Tifrunner.gnm1.ann1.B04QBU Arachis hypogaea HOM05D006147 ORTHO05D007501 2.2e-69 266.9 204 66.2
MELO3C028749.2 Cucumis melo HOM05D006147 ORTHO05D007501 4.1e-68 262.7 239 60.7
C09p25880 Brassica napus HOM05D006147 ORTHO05D007501 4.1e-60 236.1 122 90.2
BolC9t55495H Brassica oleracea HOM05D006147 ORTHO05D007501 1.2e-59 234.6 122 89.3
Nn4g26316 Nelumbo nucifera HOM05D006147 ORTHO05D007501 1.8e-55 220.7 123 80.5
Nn6g32490 Nelumbo nucifera HOM05D006147 ORTHO05D007501 1.8e-55 220.7 123 80.5
arahy.Tifrunner.gnm1.ann1.KZ1FWN Arachis hypogaea HOM05D006147 ORTHO05D007501 1.1e-49 201.4 182 61.0
arahy.Tifrunner.gnm1.ann1.63XKYH Arachis hypogaea HOM05D006147 ORTHO05D007501 3.6e-48 196.4 150 68.7
BcaB08g34979 Brassica carinata HOM05D006147 ORTHO05D007501 4.2e-41 172.9 144 66.0
SEGI_33639 Sequoiadendron giganteum HOM05D006147 ORTHO05D007501 1.8e-39 167.5 122 64.8
BolC2t08257H Brassica oleracea HOM05D006147 ORTHO05D007501 6.8e-39 165.6 120 75.0
CDE04G1860 Ceratophyllum demersum HOM05D006147 ORTHO05D007501 1.4e-36 157.9 297 35.0
BraA07t28491Z Brassica rapa HOM05D006147 ORTHO05D007501 3.1e-36 156.8 102 79.4
Pp3s34_200 Physcomitrium patens HOM05D006147 ORTHO05D007501 1.6e-35 154.5 304 30.9
BcaC03g14677 Brassica carinata HOM05D006147 ORTHO05D007501 8.5e-34 148.7 117 70.1
Cc02_g16880 Coffea canephora HOM05D006147 ORTHO05D007501 1.6e-32 144.4 78 87.2
A07p07030 Brassica napus HOM05D006147 ORTHO05D007501 1.7e-29 134.4 102 71.6
arahy.Tifrunner.gnm1.ann1.PBTS15 Arachis hypogaea HOM05D006147 ORTHO05D007501 1.4e-28 131.3 186 40.9
C02p21170 Brassica napus HOM05D006147 ORTHO05D007501 2.0e-27 127.5 114 63.2
C02p21180 Brassica napus HOM05D006147 ORTHO05D007501 8.6e-26 122.1 66 86.4
arahy.Tifrunner.gnm1.ann1.UB8UIZ Arachis hypogaea HOM05D006147 ORTHO05D007501 3.0e-23 113.6 102 58.8
arahy.Tifrunner.gnm1.ann1.U5A9T5 Arachis hypogaea HOM05D000321 ORTHO05D000204 4.9e-21 106.3 185 38.4
Duzib132G0670 Durio zibethinus HOM05D006147 ORTHO05D007501 4.1e-20 103.2 131 47.3
SEGI_01868 Sequoiadendron giganteum HOM05D006147 ORTHO05D007501 3.7e-13 80.1 64 60.9
MBI05_g17912_MAGBIO Magnolia biondii HOM05D006147 ORTHO05D007501 1.1e-12 78.6 45 82.2
VMungo1309G1770 Vigna mungo HOM05D001625 ORTHO05D008114 2.1e-08 64.3 234 27.4
Phvul.009G064000 Phaseolus vulgaris HOM05D001625 ORTHO05D008114 3.1e-07 60.5 225 28.4
Psat5g077160 Pisum sativum HOM05D001625 ORTHO05D008114 4.0e-07 60.1 230 25.2
Lj1g0008117 Lotus japonicus HOM05D001625 ORTHO05D008114 5.2e-07 59.7 230 27.0
Cfa018529 Carpinus fangiana HOM05D001625 ORTHO05D008114 8.9e-07 58.9 239 27.2
Medtr3g101500 Medicago truncatula HOM05D001625 ORTHO05D008114 2.6e-06 57.4 222 25.2
CiPaw.15G061300 Carya illinoinensis HOM05D001625 ORTHO05D008114 3.4e-06 57.0 225 25.8
MELO3C013418.2 Cucumis melo HOM05D006147 ORTHO05D007501 4.4e-06 56.6 59 50.8
Glyma.06G038700 Glycine max HOM05D001625 ORTHO05D008114 4.4e-06 56.6 229 30.1
QL02p005347 Quercus lobata HOM05D001625 ORTHO05D008114 4.4e-06 56.6 222 27.0
arahy.Tifrunner.gnm1.ann1.SS1ETW Arachis hypogaea HOM05D001625 ORTHO05D008114 7.5e-06 55.8 221 27.1
arahy.Tifrunner.gnm1.ann1.GU4KEX Arachis hypogaea HOM05D001625 ORTHO05D008114 9.8e-06 55.5 221 27.1


User provided reference genes

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