Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL4G10230 Arabidopsis lyrata HOM05D003311 ORTHO05D003707 8.7e-145 517.3 333 100.0
AT2G21140 Arabidopsis thaliana HOM05D003311 ORTHO05D003707 4.9e-124 448.4 335 86.3
Carub.0004s0016 Capsella rubella HOM05D003311 ORTHO05D003707 2.6e-101 372.9 336 74.4
CARHR111970 Cardamine hirsuta HOM05D003311 ORTHO05D003707 5.5e-99 365.2 354 70.3
Sp4g00290 Schrenkiella parvula HOM05D003311 ORTHO05D003707 2.0e-77 293.5 345 66.7
Thhalv10000244m.g Eutrema salsugineum HOM05D003311 ORTHO05D003707 2.3e-76 290.0 351 64.1
A04p15910 Brassica napus HOM05D003311 ORTHO05D003707 1.7e-68 263.8 228 65.8
C04p50360 Brassica napus HOM05D003311 ORTHO05D003707 1.6e-66 257.3 205 68.8
BolC4t26634H Brassica oleracea HOM05D003311 ORTHO05D003707 1.6e-66 257.3 205 68.8
CARHR294460 Cardamine hirsuta HOM05D003311 ORTHO05D003707 3.2e-62 243.0 231 59.3
Carub.0007s0062 Capsella rubella HOM05D003311 ORTHO05D003707 6.2e-58 228.8 218 59.6
Thhalv10025123m.g Eutrema salsugineum HOM05D003311 ORTHO05D003707 8.3e-55 218.4 184 64.1
AL7G10640 Arabidopsis lyrata HOM05D003311 ORTHO05D003707 2.7e-53 213.4 217 57.1
Sp7g37040 Schrenkiella parvula HOM05D003311 ORTHO05D003707 2.7e-53 213.4 181 65.2
Aa31LG6G16430 Aethionema arabicum HOM05D003311 ORTHO05D003707 3.9e-52 209.5 211 56.4
AT4G38770 Arabidopsis thaliana HOM05D003311 ORTHO05D003707 6.6e-52 208.8 217 56.2
BraA08t34359Z Brassica rapa HOM05D003311 ORTHO05D003707 1.5e-51 207.6 186 60.2
BcaB03g12224 Brassica carinata HOM05D003311 ORTHO05D003707 1.9e-51 207.2 187 59.9
BcaC01g00253 Brassica carinata HOM05D003311 ORTHO05D003707 2.5e-51 206.8 186 60.2
A08p24020 Brassica napus HOM05D003311 ORTHO05D003707 2.5e-51 206.8 187 59.9
C03p77310 Brassica napus HOM05D003311 ORTHO05D003707 2.5e-51 206.8 186 60.2
BolC3t19984H Brassica oleracea HOM05D003311 ORTHO05D003707 2.5e-51 206.8 186 60.2
BraA01t00013Z Brassica rapa HOM05D003311 ORTHO05D003707 4.3e-51 206.1 249 52.2
BcaNung01299 Brassica carinata HOM05D003311 ORTHO05D003707 4.0e-49 199.5 349 56.2
BolC1t00017H Brassica oleracea HOM05D003311 ORTHO05D003707 4.0e-49 199.5 349 56.2
C01p00120 Brassica napus HOM05D003311 ORTHO05D003707 5.2e-49 199.1 349 54.2
Aa31LG7G15540 Aethionema arabicum HOM05D003311 ORTHO05D003707 8.3e-47 191.8 211 48.8
THA.LOC104807787 Tarenaya hassleriana HOM05D003311 ORTHO05D003707 1.7e-44 184.1 135 65.2
THA.LOC104824774 Tarenaya hassleriana HOM05D003311 ORTHO05D003707 8.6e-44 181.8 218 50.9
Atru.chr5.3229 Acer truncatum HOM05D003311 ORTHO05D003707 3.0e-36 156.8 210 48.6
COL.COLO4_17258 Corchorus olitorius HOM05D003311 ORTHO05D003707 6.6e-36 155.6 238 46.2
TAR628G0207 Trochodendron aralioides HOM05D003311 ORTHO05D003707 2.5e-35 153.7 234 44.9
Duzib052G0176 Durio zibethinus HOM05D003311 ORTHO05D003707 5.6e-35 152.5 218 48.2
Nn5g29097 Nelumbo nucifera HOM05D003311 ORTHO05D003707 7.3e-35 152.1 230 45.2
Potri.004G168600 Populus trichocarpa HOM05D003311 ORTHO05D003707 2.1e-34 150.6 232 45.3
Sabra04G0113000 Salix brachista HOM05D003311 ORTHO05D003707 1.1e-33 148.3 215 47.4
Thecc.02G066700 Theobroma cacao HOM05D003311 ORTHO05D003707 1.1e-33 148.3 176 48.3
Duzib132G0547 Durio zibethinus HOM05D003311 ORTHO05D003707 2.4e-33 147.1 200 48.0
MELO3C020785.2 Cucumis melo HOM05D003311 ORTHO05D003707 1.2e-32 144.8 190 47.4
CsaV3_2G015730 Cucumis sativus L. HOM05D003311 ORTHO05D003707 2.0e-32 144.1 206 44.2
Potri.009G129900 Populus trichocarpa HOM05D003311 ORTHO05D003707 2.0e-32 144.1 229 45.0
Phvul.011G026700 Phaseolus vulgaris HOM05D003311 ORTHO05D003707 3.4e-32 143.3 170 47.6
Cpa.g.sc37.189 Carica papaya HOM05D003311 ORTHO05D003707 4.4e-32 142.9 177 51.4
Sed0012527 Sechium edule HOM05D003311 ORTHO05D003707 5.8e-32 142.5 206 44.7
Ciclev10029326m.g Citrus clementina HOM05D003311 ORTHO05D003707 7.6e-32 142.1 178 47.2
Cfa005186 Carpinus fangiana HOM05D003311 ORTHO05D003707 9.9e-32 141.7 217 43.8
Duzib099G0001 Durio zibethinus HOM05D003311 ORTHO05D003707 2.9e-31 140.2 221 43.4
QL11p047628 Quercus lobata HOM05D003311 ORTHO05D003707 3.8e-31 139.8 168 51.2
Hund00043 Selenicereus undatus HOM05D003311 ORTHO05D003707 6.4e-31 139.0 217 45.6
CiPaw.06G125100 Carya illinoinensis HOM05D003311 ORTHO05D003707 1.4e-30 137.9 189 47.1
Sabra09G0099300 Salix brachista HOM05D003311 ORTHO05D003707 1.4e-30 137.9 202 44.6
GSVIVG01024081001 Vitis vinifera HOM05D003311 ORTHO05D003707 1.9e-30 137.5 204 44.6
Prupe.8G160900 Prunus persica HOM05D003311 ORTHO05D003707 2.4e-30 137.1 229 45.9
ClCG02G011360 Citrullus lanatus HOM05D003311 ORTHO05D003707 3.2e-30 136.7 231 42.0
ClCG02G011540 Citrullus lanatus HOM05D003311 ORTHO05D003707 3.2e-30 136.7 231 42.0
Lj3g0005308 Lotus japonicus HOM05D003311 ORTHO05D003707 3.2e-30 136.7 136 54.4
Lalb_Chr01g0001331 Lupinus albus HOM05D003311 ORTHO05D003707 3.2e-30 136.7 157 49.0
Actinidia20487 Actinidia chinensis HOM05D000144 ORTHO05D003707 4.2e-30 136.3 216 43.5
Gorai.002G193500 Gossypium raimondii HOM05D003311 ORTHO05D003707 4.2e-30 136.3 217 42.9
Hma1.2p1_4000F.1_g338120 Hydrangea macrophylla HOM05D003311 ORTHO05D003707 4.2e-30 136.3 190 43.7
Lj9A389T67 Lonicera japonica HOM05D003311 ORTHO05D003707 4.2e-30 136.3 198 46.0
RcHm_v2.0_Chr6g0245161 Rosa chinensis HOM05D003311 ORTHO05D003707 4.2e-30 136.3 183 48.1
Gohir.D01G156000 Gossypium hirsutum HOM05D003311 ORTHO05D003707 5.4e-30 136.0 217 42.9
AUR62013087 Chenopodium quinoa HOM05D003311 ORTHO05D003707 7.1e-30 135.6 214 41.1
DCAR_022953 Daucus carota HOM05D003311 ORTHO05D003707 9.3e-30 135.2 218 44.0
Gohir.A01G164100 Gossypium hirsutum HOM05D003311 ORTHO05D003707 1.2e-29 134.8 217 42.4
Actinidia00597 Actinidia chinensis HOM05D003311 ORTHO05D003707 4.6e-29 132.9 189 43.4
Aqoxy5G01798 Aquilegia oxysepala HOM05D003311 ORTHO05D003707 6.0e-29 132.5 222 42.8
TWI75G0647 Tripterygium wilfordii HOM05D003311 ORTHO05D003707 1.0e-28 131.7 219 42.0
Atru.chr5.3230 Acer truncatum HOM05D003311 ORTHO05D003707 1.3e-28 131.3 163 48.5
Medtr4g075333 Medicago truncatula HOM05D003311 ORTHO05D003707 1.3e-28 131.3 141 51.1
MSTRG.5426 Avicennia marina HOM05D003311 ORTHO05D003707 1.7e-28 131.0 216 42.1
Dinv04967 Davidia involucrata HOM05D003311 ORTHO05D003707 1.7e-28 131.0 203 44.8
Sc08g0003160 Simmondsia chinensis HOM05D003311 ORTHO05D003707 1.7e-28 131.0 202 41.6
TPR.G17164 Trifolium pratense HOM05D003311 ORTHO05D003707 1.7e-28 131.0 162 48.1
MSTRG.16857 Avicennia marina HOM05D003311 ORTHO05D003707 3.9e-28 129.8 211 40.8
Peaxi162Scf00538g00520 Petunia axillaris HOM05D003311 ORTHO05D003707 3.9e-28 129.8 183 44.8
Ciclev10028101m.g Citrus clementina HOM05D003311 ORTHO05D003707 5.1e-28 129.4 231 42.0
Lalb_Chr03g0024711 Lupinus albus HOM05D003311 ORTHO05D003707 5.1e-28 129.4 182 46.2
Eucgr.L01869 Eucalyptus grandis HOM05D003311 ORTHO05D003707 1.1e-27 128.3 200 43.0
Peaxi162Scf00362g00962 Petunia axillaris HOM05D003311 ORTHO05D003707 1.1e-27 128.3 205 42.9
MD05G1116400 Malus domestica HOM05D003311 ORTHO05D003707 1.5e-27 127.9 210 42.4
HanXRQChr10g0289061 Helianthus annuus HOM05D003311 ORTHO05D003707 4.3e-27 126.3 195 43.6
AUR62010091 Chenopodium quinoa HOM05D003311 ORTHO05D003707 5.6e-27 125.9 213 39.0
Lsat_1_v5_gn_3_45680 Lactuca sativa HOM05D003311 ORTHO05D003707 7.3e-27 125.6 164 45.7
ClCG00G004470 Citrullus lanatus HOM05D003311 ORTHO05D003707 1.3e-26 124.8 173 45.7
SGA_v2.0_scaffold32G13229 Striga asiatica HOM05D003311 ORTHO05D003707 1.6e-26 124.4 208 40.9
FvH4_2g01970 Fragaria vesca HOM05D003311 ORTHO05D003707 2.1e-26 124.0 138 49.3
FAN15G0502 Fragaria x ananassa HOM05D003311 ORTHO05D003707 2.1e-26 124.0 138 49.3
FAN20G1603 Fragaria x ananassa HOM05D003311 ORTHO05D003707 2.1e-26 124.0 138 49.3
FAN27G1129 Fragaria x ananassa HOM05D003311 ORTHO05D003707 2.1e-26 124.0 138 49.3
vmacro02251 Vaccinium macrocarpon HOM05D003311 ORTHO05D003707 2.1e-26 124.0 185 45.4
Ca_19004_v3 Cicer arietinum L. HOM05D003311 ORTHO05D003707 3.6e-26 123.2 162 46.3
Oeu010053.1 Olea europaea HOM05D003311 ORTHO05D003707 3.6e-26 123.2 189 41.8
CAN.G588.28 Capsicum annuum HOM05D003311 ORTHO05D003707 6.2e-26 122.5 212 40.6
FAN24G0785 Fragaria x ananassa HOM05D003311 ORTHO05D003707 6.2e-26 122.5 138 48.6
Rhsim11G0187900 Rhododendron simsii HOM05D003311 ORTHO05D003707 6.2e-26 122.5 165 45.5
PGSC0003DMG400004441 Solanum tuberosum HOM05D003311 ORTHO05D003707 6.2e-26 122.5 153 46.4
GSVIVG01024076001 Vitis vinifera HOM05D003311 ORTHO05D003707 6.2e-26 122.5 203 44.8
DCAR_003701 Daucus carota HOM05D003311 ORTHO05D003707 8.1e-26 122.1 217 42.9
CANSAT25G1598 Cannabis sativa HOM05D003311 ORTHO05D003707 1.1e-25 121.7 240 37.9
MD10G1118600 Malus domestica HOM05D003311 ORTHO05D003707 1.4e-25 121.3 187 45.5
Gorai.012G153300 Gossypium raimondii HOM05D003311 ORTHO05D003707 2.4e-25 120.6 157 43.9
Gohir.D04G164900 Gossypium hirsutum HOM05D003311 ORTHO05D003707 3.1e-25 120.2 157 43.9
CsaV3_7G000820 Cucumis sativus L. HOM05D000144 ORTHO05D003707 5.3e-25 119.4 182 42.3
Gohir.A04G122900 Gossypium hirsutum HOM05D003311 ORTHO05D003707 5.3e-25 119.4 157 43.3
PGSC0003DMG400001243 Solanum tuberosum HOM05D003311 ORTHO05D003707 5.3e-25 119.4 135 48.1
Phvul.009G024900 Phaseolus vulgaris HOM05D003311 ORTHO05D003707 9.0e-25 118.6 165 46.7
Sopen10g024830 Solanum pennellii HOM05D003311 ORTHO05D003707 9.0e-25 118.6 179 41.9
CiPaw.05G077500 Carya illinoinensis HOM05D003311 ORTHO05D003707 1.2e-24 118.2 212 39.6
TAR376G0773 Trochodendron aralioides HOM05D003311 ORTHO05D003707 1.2e-24 118.2 189 41.3
QL05p072824 Quercus lobata HOM05D003311 ORTHO05D008853 1.5e-24 117.9 111 54.1
Ah.01g009150 Amaranthus hybridus HOM05D003396 ORTHO05D003646 2.0e-24 117.5 128 44.5
Duzib248G1175 Durio zibethinus HOM05D003311 ORTHO05D003707 2.0e-24 117.5 162 46.3
Glyma.04G005400 Glycine max HOM05D003311 ORTHO05D003707 2.0e-24 117.5 189 42.3
HanXRQChr10g0294871 Helianthus annuus HOM05D003311 ORTHO05D003707 2.0e-24 117.5 194 40.7
VMungo1309G0179 Vigna mungo HOM05D003311 ORTHO05D003707 2.6e-24 117.1 183 43.7
HanXRQChr07g0186871 Helianthus annuus HOM05D003311 ORTHO05D003707 4.5e-24 116.3 228 40.4
Sopen10g024820 Solanum pennellii HOM05D003311 ORTHO05D003707 5.8e-24 115.9 190 41.1
TWI79G0740 Tripterygium wilfordii HOM05D003311 ORTHO05D003707 5.8e-24 115.9 165 43.0
MELO3C013376.2 Cucumis melo HOM05D003311 ORTHO05D003707 7.6e-24 115.5 171 41.5
Nitab4.5_0000956g0190 Nicotiana tabacum HOM05D003311 ORTHO05D003707 7.6e-24 115.5 210 40.0
Sed0022693 Sechium edule HOM05D003311 ORTHO05D003707 7.6e-24 115.5 167 41.3
EL10Ac9g21436 Beta vulgaris HOM05D003311 ORTHO05D003707 9.9e-24 115.2 138 45.7
Manes.11G090200 Manihot esculenta HOM05D003311 ORTHO05D003707 1.3e-23 114.8 209 42.6
SGA_v2.0_scaffold207G41882 Striga asiatica HOM05D003311 ORTHO05D003707 1.7e-23 114.4 185 39.5
ECA234G1895 Erigeron canadensis HOM05D003311 ORTHO05D003707 2.2e-23 114.0 138 45.7
Psat7g138320 Pisum sativum HOM05D003311 ORTHO05D003707 2.2e-23 114.0 142 47.9
Solyc10g054900.2 Solanum lycopersicum HOM05D003311 ORTHO05D003707 2.2e-23 114.0 192 42.2
Nn1g05901 Nelumbo nucifera HOM05D003311 ORTHO05D003707 2.9e-23 113.6 176 45.5
Sopen01g053220 Solanum pennellii HOM05D003311 ORTHO05D003707 3.8e-23 113.2 175 40.0
CSS0033713 Camellia sinensis var. sinensis HOM05D003311 ORTHO05D003707 4.9e-23 112.8 190 41.6
Haze_02195 Corylus avellana HOM05D003311 ORTHO05D003707 6.4e-23 112.5 221 41.2
ECA246G0279 Erigeron canadensis HOM05D003311 ORTHO05D003707 6.4e-23 112.5 199 41.7
Nitab4.5_0013889g0010 Nicotiana tabacum HOM05D003311 ORTHO05D003707 6.4e-23 112.5 204 39.2
Oeu008608.1 Olea europaea HOM05D003311 ORTHO05D003707 6.4e-23 112.5 214 39.3
PGSC0003DMG400001631 Solanum tuberosum HOM05D003311 ORTHO05D003707 6.4e-23 112.5 158 42.4
HanXRQChr10g0290731 Helianthus annuus HOM05D003311 ORTHO05D003707 1.1e-22 111.7 186 39.2
ClCG02G004300 Citrullus lanatus HOM05D003311 ORTHO05D003707 1.4e-22 111.3 164 44.5
Aqoxy5G01799 Aquilegia oxysepala HOM05D003311 ORTHO05D003707 3.2e-22 110.2 217 35.9
Hund06406 Selenicereus undatus HOM05D003396 ORTHO05D003646 3.2e-22 110.2 154 40.3
Oeu008607.1 Olea europaea HOM05D003311 ORTHO05D003707 5.4e-22 109.4 216 38.4
arahy.Tifrunner.gnm1.ann1.6SU9IG Arachis hypogaea HOM05D003311 ORTHO05D003707 7.1e-22 109.0 154 45.5
Eucgr.I01377 Eucalyptus grandis HOM05D003311 ORTHO05D003707 7.1e-22 109.0 192 39.6
MBI05_g26897_MAGBIO Magnolia biondii HOM05D003311 ORTHO05D003707 9.3e-22 108.6 127 44.1
Sopen10g024840 Solanum pennellii HOM05D003311 ORTHO05D003707 9.3e-22 108.6 156 43.6
arahy.Tifrunner.gnm1.ann1.M74JA5 Arachis hypogaea HOM05D003311 ORTHO05D003707 1.6e-21 107.8 154 46.8
MBI09_g00986_MAGBIO Magnolia biondii HOM05D003311 ORTHO05D003707 2.7e-21 107.1 235 35.7
unitig_0.g832 Utricularia gibba HOM05D003311 ORTHO05D003707 3.5e-21 106.7 163 38.0
CAN.G104.8 Capsicum annuum HOM05D003311 ORTHO05D003707 6.0e-21 105.9 156 47.4
CSS0038966 Camellia sinensis var. sinensis HOM05D003311 ORTHO05D003707 7.9e-21 105.5 205 35.6
Oeu046127.1 Olea europaea HOM05D003311 ORTHO05D003707 7.9e-21 105.5 181 43.1
Rhsim05G0063000 Rhododendron simsii HOM05D003311 ORTHO05D003707 2.3e-20 104.0 223 36.3
PGR042G2254 Punica granatum HOM05D003311 ORTHO05D003707 5.1e-20 102.8 183 39.3
MBI05_g46239_MAGBIO Magnolia biondii HOM05D003311 ORTHO05D003707 6.7e-20 102.4 188 36.7
SalBow3G2231 Salvia bowleyana HOM05D003311 ORTHO05D003707 8.7e-20 102.1 187 36.4
ATR0810G037 Amborella trichopoda HOM05D003311 ORTHO05D003707 1.5e-19 101.3 184 36.4
SalBow6G3538 Salvia bowleyana HOM05D003311 ORTHO05D003707 1.9e-19 100.9 205 37.6
PSO700G0002 Papaver somniferum HOM05D003311 ORTHO05D003707 7.4e-19 99.0 220 37.3
PSO170G2430 Papaver somniferum HOM05D003311 ORTHO05D003707 2.1e-18 97.4 220 36.8
Nitab4.5_0000980g0220 Nicotiana tabacum HOM05D003311 ORTHO05D003707 1.4e-17 94.7 168 38.7
QL09p030113 Quercus lobata HOM05D003311 ORTHO05D003707 1.2e-16 91.7 84 56.0
Nitab4.5_0000283g0120 Nicotiana tabacum HOM05D003311 ORTHO05D003707 1.5e-16 91.3 196 34.2
DCAR_003704 Daucus carota HOM05D003311 ORTHO05D003707 4.5e-16 89.7 203 34.5
unitig_37.g12824 Utricularia gibba HOM05D003311 ORTHO05D003707 5.8e-16 89.4 163 38.7
MBI05_g25817_MAGBIO Magnolia biondii HOM05D003311 ORTHO05D003707 7.6e-16 89.0 165 34.5
unitig_60.g25871 Utricularia gibba HOM05D003311 ORTHO05D003707 7.6e-16 89.0 138 39.9
CDE08G0629 Ceratophyllum demersum HOM05D003311 ORTHO05D003707 1.7e-15 87.8 250 32.0
Zm00001eb026460 Zea mays HOM05D003311 ORTHO05D003707 8.4e-15 85.5 231 32.9
unitig_744.g24265 Utricularia gibba HOM05D003311 ORTHO05D003707 1.1e-14 85.1 144 38.2
DCAR_003702 Daucus carota HOM05D003311 ORTHO05D003707 5.5e-14 82.8 183 34.4
MSTRG.20036 Avicennia marina HOM05D003311 ORTHO05D003707 1.2e-13 81.6 125 40.0
unitig_21.g20802 Utricularia gibba HOM05D003311 ORTHO05D003707 1.2e-13 81.6 179 34.6
A01p00090 Brassica napus HOM05D003311 ORTHO05D003707 4.6e-13 79.7 93 54.8
SalBow6G2103 Salvia bowleyana HOM05D003311 ORTHO05D003707 1.3e-12 78.2 169 31.4
Oeu046128.1 Olea europaea HOM05D000700 ORTHO05D000397 1.1e-11 75.1 228 33.3
Os03g0245200 Oryza sativa ssp. japonica HOM05D003311 ORTHO05D003707 3.3e-11 73.6 133 36.1
Os10g0148100 Oryza sativa ssp. japonica HOM05D003311 ORTHO05D003707 4.8e-10 69.7 180 30.6
Zm00001eb398790 Zea mays HOM05D003311 ORTHO05D003707 6.2e-10 69.3 78 47.4
QL04p095545 Quercus lobata HOM05D003311 ORTHO05D003707 1.1e-09 68.6 68 55.9
Zm00001eb026530 Zea mays HOM05D003311 ORTHO05D003707 4.1e-09 66.6 166 34.9
vmacro17380 Vaccinium macrocarpon HOM05D003311 ORTHO05D003707 5.8e-08 62.8 102 37.3
Zm00001eb010490 Zea mays HOM05D003311 ORTHO05D003707 7.6e-08 62.4 201 32.8
MBI05_g26896_MAGBIO Magnolia biondii HOM05D003311 ORTHO05D003707 2.9e-07 60.5 119 33.6
Ciclev10029494m.g Citrus clementina HOM05D003311 ORTHO05D003707 3.8e-07 60.1 156 32.1
Os03g0245300 Oryza sativa ssp. japonica HOM05D003311 ORTHO05D003707 3.8e-07 60.1 159 27.7
Lj5A184G34 Lonicera japonica HOM05D003311 ORTHO05D003707 7.2e-06 55.8 91 40.7


User provided reference genes

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