Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL4G10110 Arabidopsis lyrata HOM05D006199 ORTHO05D006558 2.4e-202 708.8 393 100.0
AT2G20980 Arabidopsis thaliana HOM05D006199 ORTHO05D006558 6.5e-192 674.1 397 87.2
Carub.0004s0005 Capsella rubella HOM05D006199 ORTHO05D006558 1.2e-182 643.3 397 89.9
Thhalv10000193m.g Eutrema salsugineum HOM05D006199 ORTHO05D006558 8.0e-174 614.0 400 80.5
Sp4g00170 Schrenkiella parvula HOM05D006199 ORTHO05D006558 7.0e-170 600.9 401 79.8
BraA03t11952Z Brassica rapa HOM05D006199 ORTHO05D006558 1.1e-165 587.0 404 79.2
C03p33040 Brassica napus HOM05D006199 ORTHO05D006558 1.2e-164 583.6 403 78.7
BcaC01g04861 Brassica carinata HOM05D006199 ORTHO05D006558 2.6e-164 582.4 399 78.7
A03p27410 Brassica napus HOM05D006199 ORTHO05D006558 1.3e-163 580.1 404 78.5
BolC3t15631H Brassica oleracea HOM05D006199 ORTHO05D006558 2.2e-163 579.3 403 77.9
CARHR111860 Cardamine hirsuta HOM05D006199 ORTHO05D006558 2.2e-163 579.3 363 83.7
Aa31LG7G15660 Aethionema arabicum HOM05D006199 ORTHO05D006558 2.2e-155 552.7 434 70.5
BcaB07g29803 Brassica carinata HOM05D006199 ORTHO05D006558 1.4e-133 480.3 419 67.5
THA.LOC104807811 Tarenaya hassleriana HOM05D006199 ORTHO05D006558 5.3e-133 478.4 393 64.9
Cfa005236 Carpinus fangiana HOM05D006199 ORTHO05D006558 4.9e-123 445.3 345 66.1
QL11p050170 Quercus lobata HOM05D006199 ORTHO05D006558 2.1e-121 439.9 354 63.3
Sabra09G0104300 Salix brachista HOM05D006199 ORTHO05D006558 2.1e-121 439.9 345 64.6
CiPaw.05G081500 Carya illinoinensis HOM05D006199 ORTHO05D006558 2.7e-121 439.5 345 64.6
Potri.009G134500 Populus trichocarpa HOM05D006199 ORTHO05D006558 3.0e-120 436.0 345 64.1
Dinv41943 Davidia involucrata HOM05D006199 ORTHO05D006558 3.1e-117 426.0 335 64.5
Thecc.02G060900 Theobroma cacao HOM05D006199 ORTHO05D006558 4.1e-117 425.6 348 62.9
Duzib132G0247 Durio zibethinus HOM05D006199 ORTHO05D006558 2.6e-116 422.9 350 62.0
Gorai.002G197400 Gossypium raimondii HOM05D006199 ORTHO05D006558 5.9e-116 421.8 348 60.3
CANSAT25G2535 Cannabis sativa HOM05D006199 ORTHO05D006558 1.0e-115 421.0 346 60.4
CAN.G588.74 Capsicum annuum HOM05D006199 ORTHO05D006558 1.7e-115 420.2 343 60.6
TWI75G1548 Tripterygium wilfordii HOM05D006199 ORTHO05D006558 5.0e-115 418.7 345 62.9
GSVIVG01024030001 Vitis vinifera HOM05D006199 ORTHO05D006558 1.9e-114 416.8 331 64.4
PGR142G1980 Punica granatum HOM05D006199 ORTHO05D006558 9.3e-114 414.5 351 60.1
ClCG02G011890 Citrullus lanatus HOM05D006199 ORTHO05D006558 1.6e-113 413.7 345 60.9
Gohir.A01G168100 Gossypium hirsutum HOM05D006199 ORTHO05D006558 2.1e-113 413.3 348 59.8
Sopen01g053590 Solanum pennellii HOM05D006199 ORTHO05D006558 2.7e-113 412.9 342 60.5
Solyc01g111550.3 Solanum lycopersicum HOM05D006199 ORTHO05D006558 1.3e-112 410.6 342 60.2
Lj5A179T83 Lonicera japonica HOM05D006199 ORTHO05D006558 2.3e-112 409.8 342 61.1
RcHm_v2.0_Chr6g0251921 Rosa chinensis HOM05D006199 ORTHO05D006558 3.0e-112 409.5 344 60.5
CsaV3_2G016060 Cucumis sativus L. HOM05D006199 ORTHO05D006558 6.7e-112 408.3 346 60.1
Eucgr.I01413 Eucalyptus grandis HOM05D006199 ORTHO05D006558 1.5e-111 407.1 347 59.7
MD10G1095100 Malus domestica HOM05D006199 ORTHO05D006558 1.5e-111 407.1 344 59.9
FAN20G1063 Fragaria x ananassa HOM05D006199 ORTHO05D006558 1.3e-110 404.1 343 59.2
Nitab4.5_0005853g0010 Nicotiana tabacum HOM05D006199 ORTHO05D006558 1.3e-110 404.1 345 60.6
FvH4_2g01260 Fragaria vesca HOM05D006199 ORTHO05D006558 6.3e-110 401.7 344 59.6
MSTRG.19995 Avicennia marina HOM05D006199 ORTHO05D006558 5.3e-109 398.7 342 59.4
TAR628G1195 Trochodendron aralioides HOM05D006199 ORTHO05D006558 3.4e-108 396.0 345 59.7
Ciclev10028644m.g Citrus clementina HOM05D006199 ORTHO05D006558 4.5e-108 395.6 347 59.9
Cc02_g16220 Coffea canephora HOM05D006199 ORTHO05D006558 7.7e-108 394.8 336 59.5
Phvul.009G119500 Phaseolus vulgaris HOM05D006199 ORTHO05D006558 7.7e-108 394.8 346 59.2
Sed0003263 Sechium edule HOM05D006199 ORTHO05D006558 7.7e-108 394.8 345 58.8
Nn5g30772 Nelumbo nucifera HOM05D006199 ORTHO05D006558 1.0e-107 394.4 350 59.7
Rhsim11G0191800 Rhododendron simsii HOM05D006199 ORTHO05D006558 2.9e-107 392.9 405 52.1
Nitab4.5_0006645g0060 Nicotiana tabacum HOM05D006199 ORTHO05D006558 8.5e-107 391.3 360 57.8
Manes.04G075600 Manihot esculenta HOM05D006199 ORTHO05D006558 1.4e-106 390.6 295 64.7
VMungo1309G0102 Vigna mungo HOM05D006199 ORTHO05D006558 1.9e-106 390.2 348 58.6
Gohir.D01G159100 Gossypium hirsutum HOM05D006199 ORTHO05D006558 5.5e-106 388.7 316 60.4
Peaxi162Scf00362g00651 Petunia axillaris HOM05D006199 ORTHO05D006558 7.9e-105 384.8 352 56.2
SHI05731 Sapria himalayana HOM05D006199 ORTHO05D006558 8.8e-104 381.3 348 58.6
Lj1g0009253 Lotus japonicus HOM05D006199 ORTHO05D006558 3.3e-103 379.4 354 57.6
PGSC0003DMG400006190 Solanum tuberosum HOM05D006199 ORTHO05D006558 5.7e-103 378.6 310 60.6
Glyma.04G003800 Glycine max HOM05D006199 ORTHO05D006558 9.7e-103 377.9 353 58.4
FAN27G0272 Fragaria x ananassa HOM05D006199 ORTHO05D006558 1.7e-102 377.1 394 52.3
SalBow1G2578 Salvia bowleyana HOM05D006199 ORTHO05D006558 2.8e-102 376.3 342 57.6
Migut.B00085 Erythranthe guttata HOM05D006199 ORTHO05D006558 3.7e-102 375.9 395 51.1
EL10Ac9g21386 Beta vulgaris HOM05D006199 ORTHO05D006558 5.3e-101 372.1 337 55.2
Prupe.8G164900 Prunus persica HOM05D006199 ORTHO05D006558 5.3e-101 372.1 346 57.8
Haze_02147 Corylus avellana HOM05D006199 ORTHO05D006558 9.1e-101 371.3 408 52.7
AUR62013038 Chenopodium quinoa HOM05D006199 ORTHO05D006558 5.9e-100 368.6 345 54.8
MELO3C020815.2 Cucumis melo HOM05D006199 ORTHO05D006558 5.9e-100 368.6 394 51.0
FAN24G2717 Fragaria x ananassa HOM05D006199 ORTHO05D006558 5.9e-100 368.6 334 57.2
arahy.Tifrunner.gnm1.ann1.H9ZTXG Arachis hypogaea HOM05D006199 ORTHO05D006558 1.7e-99 367.1 347 58.2
Medtr3g117880 Medicago truncatula HOM05D006199 ORTHO05D006558 2.9e-99 366.3 344 57.8
Ah.01g022950 Amaranthus hybridus HOM05D006199 ORTHO05D006558 2.5e-98 363.2 353 53.8
Actinidia00620 Actinidia chinensis HOM05D006199 ORTHO05D006558 4.2e-98 362.5 347 57.1
COL.COLO4_17328 Corchorus olitorius HOM05D006199 ORTHO05D006558 4.7e-97 359.0 348 56.6
Lsat_1_v5_gn_4_71580 Lactuca sativa HOM05D006199 ORTHO05D006558 1.4e-96 357.5 346 55.2
MBI08_g14630_MAGBIO Magnolia biondii HOM05D006199 ORTHO05D006558 2.3e-96 356.7 345 55.7
Aqoxy6G02177 Aquilegia oxysepala HOM05D006199 ORTHO05D006558 5.7e-95 352.1 405 49.6
ECA234G0878 Erigeron canadensis HOM05D006199 ORTHO05D006558 1.3e-94 350.9 346 55.5
Atru.chr5.3311 Acer truncatum HOM05D006199 ORTHO05D006558 8.2e-94 348.2 296 59.8
PSO675G4200 Papaver somniferum HOM05D006199 ORTHO05D006558 4.1e-93 345.9 336 56.0
DCAR_022808 Daucus carota HOM05D006199 ORTHO05D006558 2.0e-92 343.6 311 57.2
TPR.G38477 Trifolium pratense HOM05D006199 ORTHO05D006558 2.6e-92 343.2 354 55.6
Sc18g0006460 Simmondsia chinensis HOM05D006199 ORTHO05D006558 4.5e-92 342.4 298 56.7
Ca_15302_v3 Cicer arietinum L. HOM05D006199 ORTHO05D006558 1.1e-90 337.8 299 58.2
PSO541G4917 Papaver somniferum HOM05D006199 ORTHO05D006558 9.4e-90 334.7 335 54.6
CiPaw.06G122500 Carya illinoinensis HOM05D006199 ORTHO05D006558 1.2e-89 334.3 330 56.1
HanXRQChr10g0300911 Helianthus annuus HOM05D006199 ORTHO05D006558 2.3e-88 330.1 345 53.0
Cpa.g.sc37.143 Carica papaya HOM05D006199 ORTHO05D006558 6.3e-86 322.0 243 65.8
ATR0078G008 Amborella trichopoda HOM05D006199 ORTHO05D006558 8.2e-86 321.6 343 49.6
Hund00025 Selenicereus undatus HOM05D006199 ORTHO05D006558 5.9e-84 315.5 328 53.0
Oeu050364.1 Olea europaea HOM05D006199 ORTHO05D006558 1.1e-82 311.2 248 61.3
AUR62010046 Chenopodium quinoa HOM05D006199 ORTHO05D006558 1.5e-82 310.8 344 50.3
Os09g0539400 Oryza sativa ssp. japonica HOM05D006199 ORTHO05D006558 2.3e-80 303.5 337 49.3
arahy.Tifrunner.gnm1.ann1.WS10KT Arachis hypogaea HOM05D006199 ORTHO05D006558 3.4e-79 299.7 353 50.7
HPP92_008341 Vanilla planifolia HOM05D006199 ORTHO05D006558 3.7e-78 296.2 346 48.6
Lalb_Chr23g0265011 Lupinus albus HOM05D006199 ORTHO05D006558 9.1e-77 291.6 331 48.6
Zm00001eb331950 Zea mays HOM05D006199 ORTHO05D006558 1.5e-71 274.2 317 46.7
Psat5g002720 Pisum sativum HOM05D006199 ORTHO05D006558 3.8e-67 259.6 347 45.8
CSS0017687 Camellia sinensis var. sinensis HOM05D006199 ORTHO05D006558 6.4e-62 242.3 191 61.3
vmacro02274 Vaccinium macrocarpon HOM05D006199 ORTHO05D006558 2.4e-61 240.4 333 40.8
BcaB01g02961 Brassica carinata HOM05D006199 ORTHO05D006558 1.2e-60 238.0 209 64.6
FAN11G3400 Fragaria x ananassa HOM05D006199 ORTHO05D006558 1.3e-59 234.6 200 58.0
Pp3c15_24300 Physcomitrium patens HOM05D006199 ORTHO05D006558 5.6e-58 229.2 308 42.2
unitig_37.g12834 Utricularia gibba HOM05D006199 ORTHO05D006558 4.4e-55 219.5 308 43.2
Mapoly0068s0001 Marchantia polymorpha HOM05D006199 ORTHO05D006558 2.1e-49 200.7 312 36.2
FvH4_3g06660 Fragaria vesca HOM05D006199 ORTHO05D006558 2.8e-49 200.3 167 58.1
AagrBONN_evm.TU.Sc2ySwM_362.2501 Anthoceros agrestis HOM05D006199 ORTHO05D006558 6.4e-46 189.1 344 34.0
FAN12G0591 Fragaria x ananassa HOM05D006199 ORTHO05D006558 4.4e-39 166.4 145 57.2
FAN06G5031 Fragaria x ananassa HOM05D006199 ORTHO05D006558 3.5e-36 156.8 129 58.9
FvH4_1g02330 Fragaria vesca HOM05D006199 ORTHO05D006558 5.2e-32 142.9 111 62.2
FAN14G5753 Fragaria x ananassa HOM05D006199 ORTHO05D006558 2.6e-31 140.6 111 61.3
AUR62027127 Chenopodium quinoa HOM05D006199 ORTHO05D006558 4.4e-31 139.8 194 44.8
Actinidia20510 Actinidia chinensis HOM05D006199 ORTHO05D006558 1.9e-29 134.4 128 53.9
FvH4_5g37420 Fragaria vesca HOM05D006199 ORTHO05D006558 7.1e-29 132.5 132 53.0
FvH4_4g14930 Fragaria vesca HOM05D006199 ORTHO05D006558 3.0e-27 127.1 129 49.6
CSS0031508 Camellia sinensis var. sinensis HOM05D006199 ORTHO05D006558 2.8e-25 120.6 106 56.6
MCO03G518 Micromonas commoda HOM05D006199 ORTHO05D006558 6.9e-24 115.9 188 33.5
SGA_v2.0_scaffold58G20372 Striga asiatica HOM05D006199 ORTHO05D006558 1.0e-19 102.1 96 54.2
RcHm_v2.0_Chr5g0048301 Rosa chinensis HOM05D006199 ORTHO05D006558 2.3e-19 100.9 218 32.6
FvH4_7g17270 Fragaria vesca HOM05D006199 ORTHO05D006558 3.0e-19 100.5 81 56.8
FAN24G0607 Fragaria x ananassa HOM05D006199 ORTHO05D006558 1.4e-16 91.7 77 53.2
FAN06G2201 Fragaria x ananassa HOM05D006199 ORTHO05D006558 2.4e-16 90.9 145 40.7
FvH4_2g23470 Fragaria vesca HOM05D006199 ORTHO05D006558 9.0e-16 89.0 69 58.0
CBR_g870 Chara braunii HOM05D006199 ORTHO05D006558 2.0e-15 87.8 261 26.8
FAN14G4166 Fragaria x ananassa HOM05D006199 ORTHO05D006558 8.4e-14 82.4 61 60.7
CDE02G3657 Ceratophyllum demersum HOM05D006199 ORTHO05D006558 4.3e-10 70.1 100 47.0
HanXRQChr15g0479941 Helianthus annuus HOM05D006199 ORTHO05D006558 2.8e-09 67.4 78 47.4
FvH4_4g05800 Fragaria vesca HOM05D006199 ORTHO05D006558 2.6e-07 60.8 54 48.1
Duzib248G0391 Durio zibethinus HOM05D006199 ORTHO05D006558 2.9e-06 57.4 79 39.2


User provided reference genes

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