Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL4G10040 Arabidopsis lyrata HOM05D004634 ORTHO05D005502 3.7e-152 541.6 288 100.0
AT2G20920 Arabidopsis thaliana HOM05D004634 ORTHO05D005502 1.9e-148 529.3 288 97.2
Carub.0004s0001 Capsella rubella HOM05D004634 ORTHO05D005502 4.3e-148 528.1 288 96.5
CARHR111820 Cardamine hirsuta HOM05D004634 ORTHO05D005502 1.5e-137 493.0 288 92.0
Sp4g00110 Schrenkiella parvula HOM05D004634 ORTHO05D005502 2.1e-131 472.6 293 88.1
BcaB01g02957 Brassica carinata HOM05D004634 ORTHO05D005502 1.7e-125 453.0 293 85.7
BcaC01g04857 Brassica carinata HOM05D004634 ORTHO05D005502 1.8e-122 443.0 291 84.5
BolC3t15633H Brassica oleracea HOM05D004634 ORTHO05D005502 1.8e-122 443.0 291 84.5
C03p33070 Brassica napus HOM05D004634 ORTHO05D005502 8.9e-122 440.7 291 84.2
Thhalv10000275m.g Eutrema salsugineum HOM05D004634 ORTHO05D005502 7.6e-121 437.6 294 83.0
A03p27430 Brassica napus HOM05D004634 ORTHO05D005502 8.6e-117 424.1 294 81.3
BraA03t11955Z Brassica rapa HOM05D004634 ORTHO05D005502 8.6e-117 424.1 294 81.3
Aa31LG7G15710 Aethionema arabicum HOM05D004634 ORTHO05D005502 1.5e-108 396.7 271 81.2
THA.LOC104804086 Tarenaya hassleriana HOM05D004634 ORTHO05D005502 2.1e-107 392.9 294 74.5
Aa31LG6G16660 Aethionema arabicum HOM05D004634 ORTHO05D005502 7.6e-105 384.4 295 72.9
THA.LOC104824757 Tarenaya hassleriana HOM05D004634 ORTHO05D005502 1.3e-101 373.6 288 74.7
TWI31G0086 Tripterygium wilfordii HOM05D004634 ORTHO05D005502 3.3e-92 342.4 295 66.1
COL.COLO4_17371 Corchorus olitorius HOM05D004634 ORTHO05D005502 7.4e-92 341.3 293 66.6
Gorai.008G037300 Gossypium raimondii HOM05D004634 ORTHO05D005502 4.0e-90 335.5 294 66.7
Gohir.A12G036500 Gossypium hirsutum HOM05D004634 ORTHO05D005502 1.5e-89 333.6 294 66.3
Gohir.D12G036100 Gossypium hirsutum HOM05D004634 ORTHO05D005502 1.5e-89 333.6 294 66.3
Manes.04G071300 Manihot esculenta HOM05D004634 ORTHO05D005502 2.0e-89 333.2 298 65.4
Cpa.g.sc20.107 Carica papaya HOM05D004634 ORTHO05D005502 2.6e-89 332.8 302 64.2
Duzib052G0999 Durio zibethinus HOM05D004634 ORTHO05D005502 3.4e-89 332.4 293 65.2
FAN24G0083 Fragaria x ananassa HOM05D004634 ORTHO05D005502 3.4e-89 332.4 292 65.1
FAN15G1522 Fragaria x ananassa HOM05D004634 ORTHO05D005502 4.5e-89 332.0 291 64.9
MD05G1124500 Malus domestica HOM05D004634 ORTHO05D005502 4.5e-89 332.0 292 64.7
FAN20G2203 Fragaria x ananassa HOM05D004634 ORTHO05D005502 5.8e-89 331.6 292 65.1
Phvul.007G018100 Phaseolus vulgaris HOM05D004634 ORTHO05D005502 5.8e-89 331.6 286 65.7
FAN27G3200 Fragaria x ananassa HOM05D004634 ORTHO05D005502 1.0e-88 330.9 292 65.1
ClCG02G012070 Citrullus lanatus HOM05D004634 ORTHO05D005502 1.3e-88 330.5 290 65.9
VMungo0720G0537 Vigna mungo HOM05D004634 ORTHO05D005502 1.3e-88 330.5 286 65.0
Cfa005282 Carpinus fangiana HOM05D004634 ORTHO05D005502 1.7e-88 330.1 299 65.2
Duzib132G0372 Durio zibethinus HOM05D004634 ORTHO05D005502 2.9e-88 329.3 298 66.1
Glyma.20G106600 Glycine max HOM05D004634 ORTHO05D005502 4.9e-88 328.6 287 66.2
TWI79G0300 Tripterygium wilfordii HOM05D004634 ORTHO05D005502 4.9e-88 328.6 289 64.7
QL11p051507 Quercus lobata HOM05D004634 ORTHO05D005502 6.5e-88 328.2 239 73.6
CiPaw.06G120500 Carya illinoinensis HOM05D004634 ORTHO05D005502 8.4e-88 327.8 296 62.8
Gohir.A01G170200 Gossypium hirsutum HOM05D004634 ORTHO05D005502 8.4e-88 327.8 294 66.3
Gohir.D01G161300 Gossypium hirsutum HOM05D004634 ORTHO05D005502 8.4e-88 327.8 294 66.3
Gorai.002G199900 Gossypium raimondii HOM05D004634 ORTHO05D005502 8.4e-88 327.8 294 66.3
Ciclev10028955m.g Citrus clementina HOM05D004634 ORTHO05D005502 1.4e-87 327.0 302 66.9
MD10G1127300 Malus domestica HOM05D004634 ORTHO05D005502 2.5e-87 326.2 290 63.1
RcHm_v2.0_Chr6g0278771 Rosa chinensis HOM05D004634 ORTHO05D005502 2.5e-87 326.2 290 63.4
CiPaw.05G084700 Carya illinoinensis HOM05D004634 ORTHO05D005502 3.2e-87 325.9 292 65.1
Atru.chr5.3387 Acer truncatum HOM05D004634 ORTHO05D005502 9.3e-87 324.3 298 63.8
Manes.11G097500 Manihot esculenta HOM05D004634 ORTHO05D005502 1.6e-86 323.6 299 63.9
Sabra04G0119200 Salix brachista HOM05D004634 ORTHO05D005502 1.6e-86 323.6 289 65.1
EL10Ac9g21345 Beta vulgaris HOM05D004634 ORTHO05D005502 2.7e-86 322.8 261 67.8
Glyma.10G283100 Glycine max HOM05D004634 ORTHO05D005502 2.7e-86 322.8 289 64.7
Potri.004G177300 Populus trichocarpa HOM05D004634 ORTHO05D005502 2.7e-86 322.8 293 64.8
FvH4_2g15590 Fragaria vesca HOM05D004634 ORTHO05D005502 3.5e-86 322.4 307 61.9
Actinidia21473 Actinidia chinensis HOM05D004634 ORTHO05D005502 4.6e-86 322.0 252 69.8
PGR042G2401 Punica granatum HOM05D004634 ORTHO05D005502 7.9e-86 321.2 294 65.0
Hma1.2p1_0163F.1_g072640 Hydrangea macrophylla HOM05D004634 ORTHO05D005502 1.3e-85 320.5 293 62.1
Ah.01g023190 Amaranthus hybridus HOM05D004634 ORTHO05D005502 1.8e-85 320.1 261 67.4
Peaxi162Scf00362g00529 Petunia axillaris HOM05D004634 ORTHO05D005502 1.8e-85 320.1 300 62.0
Thecc.02G056100 Theobroma cacao HOM05D004634 ORTHO05D005502 5.1e-85 318.5 279 65.9
TPR.G2419 Trifolium pratense HOM05D004634 ORTHO05D005502 6.7e-85 318.2 258 67.8
AUR62010016 Chenopodium quinoa HOM05D004634 ORTHO05D005502 8.7e-85 317.8 262 67.6
MBI05_g00175_MAGBIO Magnolia biondii HOM05D004634 ORTHO05D005502 8.7e-85 317.8 248 67.3
CANSAT25G1088 Cannabis sativa HOM05D004634 ORTHO05D005502 2.5e-84 316.2 296 62.8
Hma1.2p1_0032F.1_g019265 Hydrangea macrophylla HOM05D004634 ORTHO05D005502 2.5e-84 316.2 262 68.3
Migut.B00062 Erythranthe guttata HOM05D004634 ORTHO05D005502 3.3e-84 315.8 298 64.8
Psat6g232600 Pisum sativum HOM05D004634 ORTHO05D005502 3.3e-84 315.8 300 62.7
Ca_03299_v3 Cicer arietinum L. HOM05D004634 ORTHO05D005502 5.7e-84 315.1 298 62.4
Sed0005362 Sechium edule HOM05D004634 ORTHO05D005502 5.7e-84 315.1 296 63.2
CSS0049403 Camellia sinensis var. sinensis HOM05D004634 ORTHO05D005502 7.4e-84 314.7 257 67.7
Hund06448 Selenicereus undatus HOM05D004634 ORTHO05D005502 7.4e-84 314.7 270 65.2
Actinidia20523 Actinidia chinensis HOM05D004634 ORTHO05D005502 1.3e-83 313.9 251 69.3
Aqoxy6G02026 Aquilegia oxysepala HOM05D004634 ORTHO05D005502 1.6e-83 313.5 233 71.7
AUR62013006 Chenopodium quinoa HOM05D004634 ORTHO05D005502 2.1e-83 313.2 247 69.6
Medtr1g112860 Medicago truncatula HOM05D004634 ORTHO05D005502 2.1e-83 313.2 295 63.1
Lj5g0018549 Lotus japonicus HOM05D004634 ORTHO05D005502 2.8e-83 312.8 293 62.1
Dinv41921 Davidia involucrata HOM05D004634 ORTHO05D005502 3.7e-83 312.4 255 67.1
Sabra09G0106800 Salix brachista HOM05D004634 ORTHO05D005502 4.8e-83 312.0 293 64.2
Potri.009G137600 Populus trichocarpa HOM05D004634 ORTHO05D005502 8.2e-83 311.2 294 63.6
Dinv14123 Davidia involucrata HOM05D004634 ORTHO05D005502 1.1e-82 310.8 244 70.5
Nitab4.5_0003698g0030 Nicotiana tabacum HOM05D004634 ORTHO05D005502 1.1e-82 310.8 300 61.3
SGA_v2.0_scaffold58G20350 Striga asiatica HOM05D004634 ORTHO05D005502 2.4e-82 309.7 290 60.7
Rhsim11G0193300 Rhododendron simsii HOM05D004634 ORTHO05D005502 9.0e-82 307.8 249 67.9
Sed0028226 Sechium edule HOM05D004634 ORTHO05D005502 1.2e-81 307.4 292 62.7
MSTRG.19978 Avicennia marina HOM05D004634 ORTHO05D005502 2.0e-81 306.6 322 57.8
Duzib248G1349 Durio zibethinus HOM05D004634 ORTHO05D005502 2.6e-81 306.2 275 65.1
Sopen01g053790 Solanum pennellii HOM05D004634 ORTHO05D005502 2.6e-81 306.2 297 60.3
vmacro17321 Vaccinium macrocarpon HOM05D004634 ORTHO05D005502 5.9e-81 305.1 249 67.1
arahy.Tifrunner.gnm1.ann1.X9NSEY Arachis hypogaea HOM05D004634 ORTHO05D005502 1.3e-80 303.9 312 60.6
CSS0014782 Camellia sinensis var. sinensis HOM05D004634 ORTHO05D005502 1.3e-80 303.9 258 66.3
ClCG02G003930 Citrullus lanatus HOM05D004634 ORTHO05D005502 1.7e-80 303.5 292 62.7
arahy.Tifrunner.gnm1.ann1.1RV92X Arachis hypogaea HOM05D004634 ORTHO05D005502 2.2e-80 303.1 312 60.9
Eucgr.G01787 Eucalyptus grandis HOM05D004634 ORTHO05D005502 2.9e-80 302.8 315 58.1
Lalb_Chr21g0307021 Lupinus albus HOM05D004634 ORTHO05D005502 2.9e-80 302.8 290 61.0
Prupe.8G168200 Prunus persica HOM05D004634 ORTHO05D005502 2.9e-80 302.8 278 62.2
Rhsim05G0053200 Rhododendron simsii HOM05D004634 ORTHO05D005502 1.1e-79 300.8 296 60.5
GSVIVG01023991001 Vitis vinifera HOM05D004634 ORTHO05D005502 2.5e-79 299.7 221 72.9
CDE05G0405 Ceratophyllum demersum HOM05D004634 ORTHO05D005502 7.9e-78 294.7 255 62.0
Cc09_g10260 Coffea canephora HOM05D004634 ORTHO05D005502 1.3e-77 293.9 217 73.3
MELO3C020831.2 Cucumis melo HOM05D004634 ORTHO05D005502 3.0e-77 292.7 272 64.3
ECA246G0918 Erigeron canadensis HOM05D004634 ORTHO05D005502 8.7e-77 291.2 300 58.7
CAN.G588.96 Capsicum annuum HOM05D004634 ORTHO05D005502 1.1e-76 290.8 219 70.3
Nn5g30833 Nelumbo nucifera HOM05D004634 ORTHO05D005502 1.1e-76 290.8 261 63.6
TAR381G1727 Trochodendron aralioides HOM05D004634 ORTHO05D005502 4.3e-76 288.9 242 64.0
HanXRQChr17g0544171 Helianthus annuus HOM05D004634 ORTHO05D005502 5.7e-76 288.5 221 69.7
Ah.01g008170 Amaranthus hybridus HOM05D004634 ORTHO05D005502 9.7e-76 287.7 270 61.9
CDE05G2434 Ceratophyllum demersum HOM05D004634 ORTHO05D005502 2.2e-75 286.6 266 59.4
MELO3C013335.2 Cucumis melo HOM05D004634 ORTHO05D005502 8.2e-75 284.6 293 58.4
PGSC0003DMG400018041 Solanum tuberosum HOM05D004634 ORTHO05D005502 8.2e-75 284.6 238 63.4
unitig_744.g24280 Utricularia gibba HOM05D004634 ORTHO05D005502 8.2e-75 284.6 221 69.2
Migut.N01330 Erythranthe guttata HOM05D004634 ORTHO05D005502 1.1e-74 284.3 242 64.5
vmacro02287 Vaccinium macrocarpon HOM05D004634 ORTHO05D005502 1.1e-74 284.3 286 58.4
Zm00001eb003030 Zea mays HOM05D004634 ORTHO05D005502 3.1e-74 282.7 254 62.6
Solyc01g111750.4 Solanum lycopersicum HOM05D004634 ORTHO05D005502 4.1e-74 282.3 287 57.5
DCAR_003183 Daucus carota HOM05D004634 ORTHO05D005502 7.7e-73 278.1 274 58.4
Lj9A400T59 Lonicera japonica HOM05D004634 ORTHO05D005502 3.8e-72 275.8 251 62.2
Zm00001eb402730 Zea mays HOM05D004634 ORTHO05D005502 5.0e-72 275.4 242 63.6
PSO210G1566 Papaver somniferum HOM05D004634 ORTHO05D005502 8.5e-72 274.6 284 58.1
HPP92_001746 Vanilla planifolia HOM05D004634 ORTHO05D005502 1.1e-71 274.2 240 61.2
CsaV3_2G016230 Cucumis sativus L. HOM05D004634 ORTHO05D005502 4.2e-71 272.3 256 63.3
PSO170G0173 Papaver somniferum HOM05D004634 ORTHO05D005502 1.2e-70 270.8 230 65.2
Oeu015555.1 Olea europaea HOM05D004634 ORTHO05D005502 1.5e-68 263.8 235 61.7
PSO541G4751 Papaver somniferum HOM05D004634 ORTHO05D005502 1.1e-66 257.7 233 61.8
Lsat_1_v5_gn_3_47561 Lactuca sativa HOM05D004634 ORTHO05D005502 2.4e-66 256.5 227 63.4
Os03g0137300 Oryza sativa ssp. japonica HOM05D004634 ORTHO05D005502 2.0e-65 253.4 209 64.6
Nn6g31925 Nelumbo nucifera HOM05D004634 ORTHO05D005502 5.0e-64 248.8 222 62.2
ATR0661G512 Amborella trichopoda HOM05D004634 ORTHO05D005502 1.2e-62 244.2 216 63.0
PSO675G7052 Papaver somniferum HOM05D004634 ORTHO05D005502 8.8e-61 238.0 231 57.1
Sc18g0006360 Simmondsia chinensis HOM05D004634 ORTHO05D005502 1.8e-58 230.3 211 61.1
TAR376G0880 Trochodendron aralioides HOM05D004634 ORTHO05D005502 1.8e-58 230.3 253 58.1
Mapoly0158s0035 Marchantia polymorpha HOM05D004634 ORTHO05D005502 3.1e-58 229.6 245 53.1
Haze_02111 Corylus avellana HOM05D004634 ORTHO05D005502 1.6e-57 227.3 163 73.6
AagrBONN_evm.TU.Sc2ySwM_344.2768 Anthoceros agrestis HOM05D004634 ORTHO05D005502 5.9e-57 225.3 234 53.8
Lj5A177T58 Lonicera japonica HOM05D004634 ORTHO05D005502 5.9e-57 225.3 263 55.5
TAR381G0316 Trochodendron aralioides HOM05D004634 ORTHO05D005502 1.1e-55 221.1 172 67.4
Pp3c10_20920 Physcomitrium patens HOM05D004634 ORTHO05D005502 1.5e-55 220.7 229 53.3
Pp3c20_20480 Physcomitrium patens HOM05D004634 ORTHO05D005502 6.7e-53 211.8 238 51.7
Lj9A397T37 Lonicera japonica HOM05D004634 ORTHO05D005502 1.2e-49 201.1 182 62.6
Actinidia32031 Actinidia chinensis HOM05D004634 ORTHO05D005502 8.5e-48 194.9 145 70.3
SMO356G0675 Selaginella moellendorffii HOM05D004634 ORTHO05D005502 2.1e-46 190.3 228 47.4
CBR_g40579 Chara braunii HOM05D004634 ORTHO05D000002 8.3e-43 178.3 239 42.7
Atru.chr5.3399 Acer truncatum HOM05D004634 ORTHO05D005502 4.1e-42 176.0 176 60.2
DCAR_003186 Daucus carota HOM05D004634 ORTHO05D005502 7.2e-39 165.2 114 71.1
ECA246G0196 Erigeron canadensis HOM05D004634 ORTHO05D005502 7.5e-36 155.2 127 66.9
Actinidia18044 Actinidia chinensis HOM05D004634 ORTHO05D005502 4.9e-35 152.5 158 57.6
Sed0025180 Sechium edule HOM05D004634 ORTHO05D005502 1.4e-29 134.4 125 60.0
Actinidia37338 Actinidia chinensis HOM05D004634 ORTHO05D005502 1.3e-27 127.9 106 66.0
Oeu029649.1 Olea europaea HOM05D004634 ORTHO05D005502 1.6e-25 120.9 119 57.1
MCO05G599 Micromonas commoda HOM05D004634 ORTHO05D005502 5.0e-24 115.9 255 33.7
CsaV3_7G001200 Cucumis sativus L. HOM05D004634 ORTHO05D005502 6.8e-21 105.5 153 47.1
Cre03.g190150 Chlamydomonas reinhardtii HOM05D004634 ORTHO05D005502 1.5e-20 104.4 243 34.6
CsaV3_7G001190 Cucumis sativus L. HOM05D004634 ORTHO05D005502 1.2e-17 94.7 63 74.6
Actinidia32030 Actinidia chinensis HOM05D004634 ORTHO05D005502 1.5e-12 77.8 121 47.1
BcaC07g41182 Brassica carinata HOM05D004634 ORTHO05D005502 3.7e-11 73.2 62 62.9
PRCOL_00007096 Prasinoderma coloniale HOM05D004634 ORTHO05D005502 1.2e-09 68.2 182 34.1
TWI60G0248 Tripterygium wilfordii HOM05D000764 ORTHO05D002819 3.0e-08 63.5 206 28.2
TWI81G0887 Tripterygium wilfordii HOM05D000764 ORTHO05D002819 5.1e-08 62.8 240 27.9
FvH4_5g12961 Fragaria vesca HOM05D000764 ORTHO05D002819 1.5e-07 61.2 252 29.0
FAN18G3783 Fragaria x ananassa HOM05D000764 ORTHO05D002006 1.5e-07 61.2 252 29.0
AUR62032163 Chenopodium quinoa HOM05D000764 ORTHO05D002819 2.5e-07 60.5 208 26.0
MD06G1208500 Malus domestica HOM05D000764 ORTHO05D002819 4.3e-07 59.7 240 26.7
Sc10g0009640 Simmondsia chinensis HOM05D000764 ORTHO05D002819 5.6e-07 59.3 218 28.0
CAN.G982.7 Capsicum annuum HOM05D000764 ORTHO05D002819 7.3e-07 58.9 268 27.2
EL10Ac5g11218 Beta vulgaris HOM05D000764 ORTHO05D002819 9.5e-07 58.5 182 26.9
FAN13G0269 Fragaria x ananassa HOM05D000764 ORTHO05D002006 9.5e-07 58.5 198 28.3
Sed0013361 Sechium edule HOM05D000764 ORTHO05D002819 9.5e-07 58.5 172 28.5
AUR62036921 Chenopodium quinoa HOM05D000764 ORTHO05D002819 1.6e-06 57.8 208 26.0
Sopen03g033570 Solanum pennellii HOM05D000764 ORTHO05D002819 1.6e-06 57.8 270 28.1
PGSC0003DMG403024509 Solanum tuberosum HOM05D000764 ORTHO05D002819 2.1e-06 57.4 270 28.1
Solyc03g114470.2 Solanum lycopersicum HOM05D000764 ORTHO05D002819 2.8e-06 57.0 229 27.5
CDE02G0712 Ceratophyllum demersum HOM05D000764 ORTHO05D002819 3.6e-06 56.6 177 28.8
ClCG06G015190 Citrullus lanatus HOM05D000764 ORTHO05D002819 4.7e-06 56.2 172 27.3
Dinv01013 Davidia involucrata HOM05D004634 ORTHO05D005502 4.7e-06 56.2 51 64.7
Eucgr.K02640 Eucalyptus grandis HOM05D000764 ORTHO05D002819 4.7e-06 56.2 208 27.4
Peaxi162Scf00017g03138 Petunia axillaris HOM05D000764 ORTHO05D002819 8.1e-06 55.5 201 25.9
TPR.G23891 Trifolium pratense HOM05D000764 ORTHO05D002819 8.1e-06 55.5 247 27.9


User provided reference genes

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