Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL491U10010 Arabidopsis lyrata HOM05D003976 ORTHO05D004711 3.8e-51 204.5 103 100.0
AL3G21710 Arabidopsis lyrata HOM05D003976 ORTHO05D004711 1.1e-50 203.0 103 99.0
AT3G10380 Arabidopsis thaliana HOM05D003976 ORTHO05D004711 1.1e-50 203.0 103 99.0
CARHR084860 Cardamine hirsuta HOM05D003976 ORTHO05D004711 7.3e-50 200.3 103 97.1
Carub.0003s0956 Capsella rubella HOM05D003976 ORTHO05D004711 2.1e-49 198.7 103 96.1
BolC1t05404H Brassica oleracea HOM05D003976 ORTHO05D004711 8.0e-49 196.8 103 95.1
A01p41880 Brassica napus HOM05D003976 ORTHO05D004711 3.1e-48 194.9 103 93.2
BraA01t04258Z Brassica rapa HOM05D003976 ORTHO05D004711 3.1e-48 194.9 103 93.2
Thhalv10019960m.g Eutrema salsugineum HOM05D003976 ORTHO05D004711 4.0e-48 194.5 103 95.1
A03p36500 Brassica napus HOM05D003976 ORTHO05D004711 5.2e-48 194.1 103 94.2
BcaB04g21214 Brassica carinata HOM05D003976 ORTHO05D004711 6.8e-48 193.7 103 94.2
Sp3g08650 Schrenkiella parvula HOM05D003976 ORTHO05D004711 8.9e-48 193.4 103 93.2
BcaC05g29471 Brassica carinata HOM05D003976 ORTHO05D004711 1.2e-47 193.0 103 92.2
A05p38770 Brassica napus HOM05D003976 ORTHO05D004711 1.2e-47 193.0 103 92.2
C03p44100 Brassica napus HOM05D003976 ORTHO05D004711 1.2e-47 193.0 103 93.2
C05p57780 Brassica napus HOM05D003976 ORTHO05D004711 1.2e-47 193.0 103 92.2
BolC3t16685H Brassica oleracea HOM05D003976 ORTHO05D004711 1.2e-47 193.0 103 93.2
BolC5t34435H Brassica oleracea HOM05D003976 ORTHO05D004711 1.2e-47 193.0 103 92.2
BraA03t12817Z Brassica rapa HOM05D003976 ORTHO05D004711 2.6e-47 191.8 103 93.2
Aa31LG3G2960 Aethionema arabicum HOM05D003976 ORTHO05D004711 8.3e-46 186.8 103 91.3
THA.LOC104826898 Tarenaya hassleriana HOM05D003976 ORTHO05D004711 3.9e-43 177.9 103 84.5
BcaC09g48100 Brassica carinata HOM05D003976 ORTHO05D004711 1.5e-42 176.0 90 95.6
Cpa.g.sc53.132 Carica papaya HOM05D003976 ORTHO05D004711 4.4e-39 164.5 103 77.7
CSS0009675 Camellia sinensis var. sinensis HOM05D003976 ORTHO05D004711 7.5e-39 163.7 103 77.7
GSVIVG01016219001 Vitis vinifera HOM05D003976 ORTHO05D004711 1.3e-38 162.9 103 76.7
CiPaw.01G268500 Carya illinoinensis HOM05D003976 ORTHO05D004711 2.2e-38 162.2 103 77.7
TAR633G0511 Trochodendron aralioides HOM05D003976 ORTHO05D004711 2.2e-38 162.2 101 78.2
CiPaw.02G172200 Carya illinoinensis HOM05D003976 ORTHO05D004711 2.9e-38 161.8 103 77.7
Potri.010G227100 Populus trichocarpa HOM05D003976 ORTHO05D004711 4.9e-38 161.0 103 76.7
AUR62013811 Chenopodium quinoa HOM05D003976 ORTHO05D004711 6.4e-38 160.6 101 77.2
AUR62023345 Chenopodium quinoa HOM05D003976 ORTHO05D004711 6.4e-38 160.6 100 77.0
PSO063G6915 Papaver somniferum HOM05D003976 ORTHO05D004711 6.4e-38 160.6 103 75.7
Sc06g0007810 Simmondsia chinensis HOM05D003976 ORTHO05D004711 6.4e-38 160.6 103 76.7
MD01G1103100 Malus domestica HOM05D003976 ORTHO05D004711 8.3e-38 160.2 103 76.7
PGR044G0607 Punica granatum HOM05D003976 ORTHO05D004711 8.3e-38 160.2 101 77.2
Potri.008G035300 Populus trichocarpa HOM05D003976 ORTHO05D004711 1.1e-37 159.8 103 76.7
Hund17145 Selenicereus undatus HOM05D003976 ORTHO05D004711 1.1e-37 159.8 100 77.0
TWI63G1397 Tripterygium wilfordii HOM05D003976 ORTHO05D004711 1.4e-37 159.5 103 74.8
ATR0730G009 Amborella trichopoda HOM05D003976 ORTHO05D004711 1.9e-37 159.1 103 74.8
Prupe.2G208700 Prunus persica HOM05D003976 ORTHO05D004711 1.9e-37 159.1 103 75.7
Ciclev10030617m.g Citrus clementina HOM05D003976 ORTHO05D004711 2.4e-37 158.7 101 75.2
Duzib114G0598 Durio zibethinus HOM05D003976 ORTHO05D004711 3.2e-37 158.3 103 75.7
CANSAT56G1655 Cannabis sativa HOM05D003976 ORTHO05D004711 4.1e-37 157.9 103 74.8
Lj2C20G12 Lonicera japonica HOM05D003976 ORTHO05D004711 4.1e-37 157.9 103 75.7
Aqoxy1G01141 Aquilegia oxysepala HOM05D003976 ORTHO05D004711 5.4e-37 157.5 103 74.8
Thecc.10G083800 Theobroma cacao HOM05D003976 ORTHO05D004711 5.4e-37 157.5 101 76.2
Dinv31232 Davidia involucrata HOM05D003976 ORTHO05D004711 7.0e-37 157.1 103 73.8
Phvul.007G098800 Phaseolus vulgaris HOM05D003976 ORTHO05D004711 7.0e-37 157.1 101 77.2
VMungo0251G3371 Vigna mungo HOM05D003976 ORTHO05D004711 7.0e-37 157.1 101 77.2
Glyma.20G182800 Glycine max HOM05D003976 ORTHO05D004711 9.2e-37 156.8 101 76.2
Gohir.A05G414300 Gossypium hirsutum HOM05D003976 ORTHO05D004711 9.2e-37 156.8 103 74.8
Gohir.D04G001800 Gossypium hirsutum HOM05D003976 ORTHO05D004711 9.2e-37 156.8 103 74.8
Gorai.012G002900 Gossypium raimondii HOM05D003976 ORTHO05D004711 9.2e-37 156.8 103 74.8
Actinidia18607 Actinidia chinensis HOM05D003976 ORTHO05D004711 1.2e-36 156.4 103 73.8
CsaV3_6G036710 Cucumis sativus L. HOM05D003976 ORTHO05D004711 1.2e-36 156.4 103 73.8
Glyma.10G207900 Glycine max HOM05D003976 ORTHO05D004711 1.2e-36 156.4 101 76.2
Manes.01G054600 Manihot esculenta HOM05D003976 ORTHO05D004711 1.2e-36 156.4 103 73.8
PSO339G0981 Papaver somniferum HOM05D003976 ORTHO05D004711 1.2e-36 156.4 103 74.8
HPP92_022853 Vanilla planifolia HOM05D003976 ORTHO05D004711 1.2e-36 156.4 102 72.5
Nitab4.5_0001450g0090 Nicotiana tabacum HOM05D003976 ORTHO05D004711 2.1e-36 155.6 100 76.0
Nitab4.5_0001659g0180 Nicotiana tabacum HOM05D003976 ORTHO05D004711 2.1e-36 155.6 100 76.0
Peaxi162Scf00145g01215 Petunia axillaris HOM05D003976 ORTHO05D004711 2.1e-36 155.6 100 75.0
Rhsim03G0115800 Rhododendron simsii HOM05D003976 ORTHO05D004711 2.1e-36 155.6 103 74.8
RcHm_v2.0_Chr1g0362571 Rosa chinensis HOM05D003976 ORTHO05D004711 2.1e-36 155.6 103 73.8
Cfa001691 Carpinus fangiana HOM05D003976 ORTHO05D004711 3.5e-36 154.8 101 75.2
Lj5g0000763 Lotus japonicus HOM05D003976 ORTHO05D004711 3.5e-36 154.8 101 75.2
Ca_00795_v3 Cicer arietinum L. HOM05D003976 ORTHO05D004711 4.6e-36 154.5 101 75.2
FvH4_7g18760 Fragaria vesca HOM05D003976 ORTHO05D004711 6.0e-36 154.1 103 72.8
FAN06G1302 Fragaria x ananassa HOM05D003976 ORTHO05D004711 6.0e-36 154.1 103 72.8
Nn3g18724 Nelumbo nucifera HOM05D003976 ORTHO05D004711 6.0e-36 154.1 103 72.8
Psat7g009400 Pisum sativum HOM05D003976 ORTHO05D004711 6.0e-36 154.1 101 76.2
Sed0018764 Sechium edule HOM05D003976 ORTHO05D004711 6.0e-36 154.1 103 72.8
Lalb_Chr06g0170321 Lupinus albus HOM05D003976 ORTHO05D004711 1.0e-35 153.3 101 74.3
FAN10G3044 Fragaria x ananassa HOM05D003976 ORTHO05D004711 1.3e-35 152.9 101 72.3
MSTRG.27486 Avicennia marina HOM05D003976 ORTHO05D004711 1.7e-35 152.5 102 71.6
FAN01G1125 Fragaria x ananassa HOM05D003976 ORTHO05D004711 1.7e-35 152.5 101 72.3
TWI15G0187 Tripterygium wilfordii HOM05D003976 ORTHO05D004711 1.7e-35 152.5 103 71.8
Nn4g25176 Nelumbo nucifera HOM05D003976 ORTHO05D004711 2.3e-35 152.1 103 71.8
Solyc11g008340.3 Solanum lycopersicum HOM05D003976 ORTHO05D004711 3.0e-35 151.8 100 73.0
Sopen11g004150 Solanum pennellii HOM05D003976 ORTHO05D004711 3.0e-35 151.8 100 73.0
Medtr5g017640 Medicago truncatula HOM05D003976 ORTHO05D004711 5.1e-35 151.0 101 74.3
TPR.G32679 Trifolium pratense HOM05D003976 ORTHO05D004711 5.1e-35 151.0 101 73.3
Lalb_Chr21g0313551 Lupinus albus HOM05D003976 ORTHO05D004711 6.6e-35 150.6 101 73.3
Lalb_Chr21g0313681 Lupinus albus HOM05D003976 ORTHO05D004711 6.6e-35 150.6 101 73.3
Cc02_g10920 Coffea canephora HOM05D003976 ORTHO05D004711 8.6e-35 150.2 103 71.8
DCAR_019085 Daucus carota HOM05D003976 ORTHO05D004711 8.6e-35 150.2 102 73.5
Zm00001eb330040 Zea mays HOM05D003976 ORTHO05D004711 1.5e-34 149.4 103 68.9
Lsat_1_v5_gn_2_113061 Lactuca sativa HOM05D003976 ORTHO05D004711 1.9e-34 149.1 100 71.0
EL10Ac1g00696 Beta vulgaris HOM05D003976 ORTHO05D004711 2.5e-34 148.7 108 69.4
Gohir.D10G210600 Gossypium hirsutum HOM05D003976 ORTHO05D004711 4.3e-34 147.9 103 68.9
Oeu007408.1 Olea europaea HOM05D003976 ORTHO05D004711 4.3e-34 147.9 98 72.4
Os08g0318500 Oryza sativa ssp. japonica HOM05D003976 ORTHO05D004711 4.3e-34 147.9 103 68.0
unitig_46.g18603 Utricularia gibba HOM05D003976 ORTHO05D004711 4.3e-34 147.9 103 70.9
ECA238G0457 Erigeron canadensis HOM05D003976 ORTHO05D004711 5.6e-34 147.5 100 71.0
Medtr8g104855 Medicago truncatula HOM05D003976 ORTHO05D004711 5.6e-34 147.5 107 72.0
SalBow4G0398 Salvia bowleyana HOM05D003976 ORTHO05D004711 7.3e-34 147.1 100 73.0
HanXRQChr14g0456581 Helianthus annuus HOM05D003976 ORTHO05D004711 9.5e-34 146.7 100 70.0
Migut.F01955 Erythranthe guttata HOM05D003976 ORTHO05D004711 1.2e-33 146.4 103 70.9
HanXRQChr05g0161261 Helianthus annuus HOM05D003976 ORTHO05D004711 1.6e-33 146.0 100 70.0
vmacro00383 Vaccinium macrocarpon HOM05D003976 ORTHO05D004711 2.8e-33 145.2 103 71.8
BraA05t22669Z Brassica rapa HOM05D003976 ORTHO05D004711 4.0e-32 141.4 74 91.9
CDE10G0301 Ceratophyllum demersum HOM05D003976 ORTHO05D004711 1.5e-31 139.4 100 68.0
HanXRQChr14g0455711 Helianthus annuus HOM05D003976 ORTHO05D004711 2.9e-30 135.2 101 66.3
SEGI_27589 Sequoiadendron giganteum HOM05D003976 ORTHO05D004711 2.9e-30 135.2 101 64.4
SMO172G0221 Selaginella moellendorffii HOM05D003976 ORTHO05D004711 3.2e-29 131.7 101 62.4
FAN06G0006 Fragaria x ananassa HOM05D003976 ORTHO05D004711 1.2e-28 129.8 89 69.7
FAN03G2922 Fragaria x ananassa HOM05D003976 ORTHO05D004711 2.1e-28 129.0 89 68.5
Pp3c16_24260 Physcomitrium patens HOM05D003976 ORTHO05D004711 1.5e-26 122.9 101 56.4
Atru.chr12.845 Acer truncatum HOM05D003976 ORTHO05D004711 9.5e-26 120.2 73 79.5
Haze_16845 Corylus avellana HOM05D003976 ORTHO05D004711 9.5e-26 120.2 101 63.4
Gohir.A10G202400 Gossypium hirsutum HOM05D003976 ORTHO05D004711 1.2e-25 119.8 123 52.8
SGA_v2.0_scaffold100G29552 Striga asiatica HOM05D003976 ORTHO05D004711 1.2e-25 119.8 103 60.2
FAN10G1353 Fragaria x ananassa HOM05D003976 ORTHO05D004711 1.8e-24 115.9 74 75.7
COL.COLO4_34214 Corchorus olitorius HOM05D003976 ORTHO05D004711 4.4e-23 111.3 121 54.5
Pp3c3_21120 Physcomitrium patens HOM05D003976 ORTHO05D004711 9.9e-23 110.2 101 50.5
Mapoly0170s0008 Marchantia polymorpha HOM05D003976 ORTHO05D004711 1.7e-22 109.4 101 49.5
QL08p054329 Quercus lobata HOM05D003976 ORTHO05D004711 1.0e-19 100.1 61 80.3
MD07G1169800 Malus domestica HOM05D003976 ORTHO05D004711 1.7e-19 99.4 58 84.5
Pp3c12_15420 Physcomitrium patens HOM05D003976 ORTHO05D004711 3.0e-19 98.6 100 45.0
CBR_g30687 Chara braunii HOM05D003976 ORTHO05D004711 3.9e-19 98.2 120 44.2
Sabra10G0175200 Salix brachista HOM05D003976 ORTHO05D004711 1.1e-18 96.7 103 51.5
MELO3C019825.2 Cucumis melo HOM05D003976 ORTHO05D004711 1.9e-18 95.9 57 78.9
Sabra08G0023600 Salix brachista HOM05D003976 ORTHO05D004711 1.9e-18 95.9 58 79.3
arahy.Tifrunner.gnm1.ann1.9SI57B Arachis hypogaea HOM05D003976 ORTHO05D004711 2.2e-14 82.4 101 47.5
vmacro16680 Vaccinium macrocarpon HOM05D002957 ORTHO05D007941 4.2e-13 78.2 61 62.3
vmacro23142 Vaccinium macrocarpon HOM05D002957 ORTHO05D007941 4.2e-13 78.2 61 62.3
Hma1.2p1_0384F.1_g140760 Hydrangea macrophylla HOM05D003976 ORTHO05D004711 5.4e-13 77.8 49 75.5
Gorai.011G236100 Gossypium raimondii HOM05D003976 ORTHO05D004711 2.7e-12 75.5 103 43.7
ClCG08G007720 Citrullus lanatus HOM05D003976 ORTHO05D004711 3.0e-11 72.0 45 75.6
CDE10G1014 Ceratophyllum demersum HOM05D003976 ORTHO05D004711 3.9e-11 71.6 53 66.0
MBI18_g27470_MAGBIO Magnolia biondii HOM05D003976 ORTHO05D004711 9.6e-10 67.0 77 41.6


User provided reference genes

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