Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL472U10010 Arabidopsis lyrata HOM05D001343 ORTHO05D007223 1.4e-70 270.4 252 100.0
AL8G45590 Arabidopsis lyrata HOM05D001343 ORTHO05D007223 8.5e-60 234.6 190 98.4
AT5G66030 Arabidopsis thaliana HOM05D001343 ORTHO05D007223 8.8e-41 171.4 202 83.2
Thhalv10003686m.g Eutrema salsugineum HOM05D001343 ORTHO05D007223 6.1e-34 148.7 194 74.7
Aa31LG1G14520 Aethionema arabicum HOM05D001343 ORTHO05D007223 6.3e-31 138.7 284 64.8
Carub.0008s2848 Capsella rubella HOM05D001343 ORTHO05D007223 1.7e-28 130.6 200 57.0
Sp2g30660 Schrenkiella parvula HOM05D001343 ORTHO05D007223 1.1e-27 127.9 197 69.5
BcaB04g20130 Brassica carinata HOM05D001343 ORTHO05D002008 1.8e-25 120.6 131 58.8
THA.LOC104826465 Tarenaya hassleriana HOM05D001343 ORTHO05D007223 2.0e-24 117.1 145 55.9
BolC9t54101H Brassica oleracea HOM05D001343 ORTHO05D002008 2.6e-24 116.7 93 73.1
BraA09t36667Z Brassica rapa HOM05D001343 ORTHO05D002008 2.6e-24 116.7 93 73.1
BcaC04g23105 Brassica carinata HOM05D001343 ORTHO05D002008 5.8e-24 115.5 93 72.0
A09p10220 Brassica napus HOM05D001343 ORTHO05D002008 5.8e-24 115.5 93 72.0
C09p12110 Brassica napus HOM05D001343 ORTHO05D002008 5.8e-24 115.5 93 72.0
Hma1.2p1_0300F.1_g118160 Hydrangea macrophylla HOM05D001343 ORTHO05D007223 3.0e-20 103.2 256 51.2
Duzib147G0638 Durio zibethinus HOM05D001343 ORTHO05D007223 1.2e-16 91.3 124 50.8
Thecc.01G007100 Theobroma cacao HOM05D001343 ORTHO05D007223 2.0e-16 90.5 151 44.4
Dinv08526 Davidia involucrata HOM05D001343 ORTHO05D007223 2.6e-16 90.1 253 50.2
QL06p052741 Quercus lobata HOM05D001343 ORTHO05D007223 7.5e-16 88.6 157 42.0
COL.COLO4_22537 Corchorus olitorius HOM05D001343 ORTHO05D007223 1.3e-15 87.8 130 48.5
TWI09G1271 Tripterygium wilfordii HOM05D001343 ORTHO05D007223 2.2e-15 87.0 135 45.9
Cpa.g.sc1414.4 Carica papaya HOM05D001343 ORTHO05D007223 4.9e-15 85.9 111 48.6
Sabra05G0082500 Salix brachista HOM05D001343 ORTHO05D007223 1.1e-14 84.7 106 47.2
MD02G1119300 Malus domestica HOM05D001343 ORTHO05D007223 1.9e-14 84.0 259 48.6
Prupe.7G179600 Prunus persica HOM05D001343 ORTHO05D007223 1.9e-14 84.0 141 43.3
QL06p053829 Quercus lobata HOM05D001343 ORTHO05D007223 1.9e-14 84.0 166 41.6
Manes.02G112700 Manihot esculenta HOM05D001343 ORTHO05D007223 2.4e-14 83.6 145 43.4
Atru.chr3.956 Acer truncatum HOM05D001343 ORTHO05D007223 3.2e-14 83.2 134 44.0
Ciclev10024922m.g Citrus clementina HOM05D001343 ORTHO05D007223 4.1e-14 82.8 144 41.7
MD15G1233300 Malus domestica HOM05D001343 ORTHO05D007223 4.1e-14 82.8 262 45.8
CiPaw.07G004100 Carya illinoinensis HOM05D001343 ORTHO05D007223 7.1e-14 82.0 156 41.7
Actinidia22910 Actinidia chinensis HOM05D001343 ORTHO05D007223 9.2e-14 81.6 155 42.6
Eucgr.J02528 Eucalyptus grandis HOM05D001343 ORTHO05D007223 9.2e-14 81.6 111 45.9
PGR083G0487 Punica granatum HOM05D001343 ORTHO05D007223 9.2e-14 81.6 146 41.1
Cpa.g.sc55.186 Carica papaya HOM05D001343 ORTHO05D007223 3.5e-13 79.7 230 62.2
Atru.chr3.968 Acer truncatum HOM05D001343 ORTHO05D007223 4.6e-13 79.3 144 40.3
VMungo1215G1031 Vigna mungo HOM05D001343 ORTHO05D007223 6.0e-13 79.0 159 39.0
Actinidia17384 Actinidia chinensis HOM05D001343 ORTHO05D007223 7.8e-13 78.6 157 38.2
Glyma.11G084200 Glycine max HOM05D001343 ORTHO05D007223 7.8e-13 78.6 158 40.5
EL10Ac6g15468 Beta vulgaris HOM05D001343 ORTHO05D007223 1.0e-12 78.2 147 38.8
AUR62003379 Chenopodium quinoa HOM05D001343 ORTHO05D007223 1.0e-12 78.2 111 40.5
Lalb_Chr05g0211921 Lupinus albus HOM05D001343 ORTHO05D007223 1.0e-12 78.2 153 39.9
Hund03615 Selenicereus undatus HOM05D001343 ORTHO05D007223 1.0e-12 78.2 139 40.3
CANSAT25G0854 Cannabis sativa HOM05D001343 ORTHO05D007223 1.3e-12 77.8 98 46.9
CANSAT25G1453 Cannabis sativa HOM05D001343 ORTHO05D007223 1.3e-12 77.8 98 46.9
Glyma.01G159900 Glycine max HOM05D001343 ORTHO05D007223 2.3e-12 77.0 158 39.2
Sc16g0001690 Simmondsia chinensis HOM05D001343 ORTHO05D007223 3.0e-12 76.6 100 48.0
Haze_03675 Corylus avellana HOM05D001343 ORTHO05D007223 3.9e-12 76.3 270 55.6
CSS0043948 Camellia sinensis var. sinensis HOM05D001343 ORTHO05D007223 8.6e-12 75.1 128 40.6
HanXRQChr14g0442391 Helianthus annuus HOM05D001343 ORTHO05D007223 8.6e-12 75.1 147 38.8
SGA_v2.0_scaffold12G05990 Striga asiatica HOM05D001343 ORTHO05D007223 8.6e-12 75.1 151 35.8
GSVIVG01003839001 Vitis vinifera HOM05D001343 ORTHO05D007223 3.3e-11 73.2 103 46.6
arahy.Tifrunner.gnm1.ann1.AU9Y8G Arachis hypogaea HOM05D001343 ORTHO05D007223 4.3e-11 72.8 148 37.8
arahy.Tifrunner.gnm1.ann1.SLQH96 Arachis hypogaea HOM05D001343 ORTHO05D007223 4.3e-11 72.8 148 37.8
Potri.005G099800 Populus trichocarpa HOM05D001343 ORTHO05D007223 4.3e-11 72.8 107 43.0
AUR62029449 Chenopodium quinoa HOM05D001343 ORTHO05D007223 5.6e-11 72.4 144 34.7
FAN23G1852 Fragaria x ananassa HOM05D001343 ORTHO05D007223 5.6e-11 72.4 146 37.7
CsaV3_3G000380 Cucumis sativus L. HOM05D001343 ORTHO05D007223 7.3e-11 72.0 139 38.8
FvH4_1g10521 Fragaria vesca HOM05D001343 ORTHO05D007223 7.3e-11 72.0 147 40.1
Sopen02g027640 Solanum pennellii HOM05D001343 ORTHO05D007223 9.5e-11 71.6 134 39.6
CAN.G890.76 Capsicum annuum HOM05D001343 ORTHO05D007223 1.6e-10 70.9 134 39.6
FAN19G1061 Fragaria x ananassa HOM05D001343 ORTHO05D007223 1.6e-10 70.9 148 39.9
Gohir.D10G089000 Gossypium hirsutum HOM05D001343 ORTHO05D007223 1.6e-10 70.9 142 38.7
FAN28G2189 Fragaria x ananassa HOM05D001343 ORTHO05D007223 2.1e-10 70.5 146 37.7
TAR381G1734 Trochodendron aralioides HOM05D001343 ORTHO05D007223 2.1e-10 70.5 111 38.7
ATR0661G538 Amborella trichopoda HOM05D001343 ORTHO05D007223 2.8e-10 70.1 110 36.4
ECA238G2213 Erigeron canadensis HOM05D001343 ORTHO05D007223 2.8e-10 70.1 107 38.3
TPR.G25095 Trifolium pratense HOM05D001343 ORTHO05D007223 2.8e-10 70.1 126 37.3
Gohir.A10G099100 Gossypium hirsutum HOM05D001343 ORTHO05D007223 3.6e-10 69.7 142 38.7
Medtr5g023770 Medicago truncatula HOM05D001343 ORTHO05D007223 3.6e-10 69.7 127 37.0
Phvul.002G114800 Phaseolus vulgaris HOM05D001343 ORTHO05D007223 3.6e-10 69.7 156 35.9
Psat2g150520 Pisum sativum HOM05D001343 ORTHO05D007223 3.6e-10 69.7 144 37.5
Solyc02g082840.3 Solanum lycopersicum HOM05D001343 ORTHO05D007223 3.6e-10 69.7 134 37.3
Lsat_1_v5_gn_2_74420 Lactuca sativa HOM05D001343 ORTHO05D007223 4.7e-10 69.3 142 36.6
Nn5g30956 Nelumbo nucifera HOM05D001343 ORTHO05D007223 4.7e-10 69.3 155 35.5
Os07g0472500 Oryza sativa ssp. japonica HOM05D001343 ORTHO05D007223 4.7e-10 69.3 97 42.3
Ah.03g148390 Amaranthus hybridus HOM05D001343 ORTHO05D007223 6.2e-10 68.9 144 36.1
Migut.L00927 Erythranthe guttata HOM05D001343 ORTHO05D007223 6.2e-10 68.9 133 33.8
RcHm_v2.0_Chr6g0253501 Rosa chinensis HOM05D001343 ORTHO05D007223 8.1e-10 68.6 128 37.5
Gorai.011G097900 Gossypium raimondii HOM05D001343 ORTHO05D007223 1.4e-09 67.8 142 37.3
Lj2g0004784 Lotus japonicus HOM05D001343 ORTHO05D007223 1.4e-09 67.8 151 36.4
ClCG10G000340 Citrullus lanatus HOM05D001343 ORTHO05D007223 1.8e-09 67.4 138 37.7
Rhsim10G0198000 Rhododendron simsii HOM05D001343 ORTHO05D007223 1.8e-09 67.4 104 44.2
HPP92_003502 Vanilla planifolia HOM05D001343 ORTHO05D007223 1.8e-09 67.4 98 40.8
PSO170G3735 Papaver somniferum HOM05D001343 ORTHO05D007223 2.3e-09 67.0 111 35.1
Sed0023593 Sechium edule HOM05D001343 ORTHO05D007223 2.3e-09 67.0 135 37.0
Duzib187G0329 Durio zibethinus HOM05D001343 ORTHO05D007223 3.1e-09 66.6 115 40.0
PSO210G1702 Papaver somniferum HOM05D001343 ORTHO05D007223 5.2e-09 65.9 138 32.6
Migut.L00734 Erythranthe guttata HOM05D001343 ORTHO05D007223 8.9e-09 65.1 133 32.3
MELO3C013733.2 Cucumis melo HOM05D001343 ORTHO05D007223 1.2e-08 64.7 139 36.0
Ca_24963_v3 Cicer arietinum L. HOM05D001343 ORTHO05D007223 1.5e-08 64.3 158 34.2
RcHm_v2.0_Chr2g0097461 Rosa chinensis HOM05D001343 ORTHO05D007223 2.6e-08 63.5 120 36.7
vmacro20524 Vaccinium macrocarpon HOM05D001343 ORTHO05D007223 2.6e-08 63.5 131 36.6
RcHm_v2.0_Chr2g0097581 Rosa chinensis HOM05D001343 ORTHO05D007223 3.4e-08 63.2 123 36.6
Nitab4.5_0000702g0060 Nicotiana tabacum HOM05D001343 ORTHO05D007223 5.8e-08 62.4 134 36.6
MSTRG.15594 Avicennia marina HOM05D001343 ORTHO05D007223 7.6e-08 62.0 144 34.0
Lj4A232G45 Lonicera japonica HOM05D001343 ORTHO05D007223 9.9e-08 61.6 121 39.7
SalBow5G5069 Salvia bowleyana HOM05D001343 ORTHO05D007223 2.2e-07 60.5 61 52.5
Zm00001eb104860 Zea mays HOM05D001343 ORTHO05D007223 2.2e-07 60.5 99 36.4
Peaxi162Scf01446g00025 Petunia axillaris HOM05D001343 ORTHO05D007223 4.9e-07 59.3 262 43.1
CDE06G1191 Ceratophyllum demersum HOM05D001343 ORTHO05D007223 6.4e-07 58.9 101 32.7
Cc07_g11650 Coffea canephora HOM05D001343 ORTHO05D007223 8.3e-07 58.5 133 34.6
Aqoxy5G01035 Aquilegia oxysepala HOM05D001343 ORTHO05D007223 1.9e-06 57.4 163 33.7
Oeu032010.1 Olea europaea HOM05D001343 ORTHO05D007223 2.4e-06 57.0 142 35.2
DCAR_011583 Daucus carota HOM05D001343 ORTHO05D007223 4.1e-06 56.2 139 32.4


User provided reference genes

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