Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL468U10020 Arabidopsis lyrata HOM05D007228 ORTHO05D009099 9.7e-62 240.0 121 100.0
AT5G07380 Arabidopsis thaliana HOM05D007228 ORTHO05D009099 4.1e-36 154.8 83 90.4
AL6G17680 Arabidopsis lyrata HOM05D007228 ORTHO05D009099 1.2e-35 153.3 84 89.3
CARHR205770 Cardamine hirsuta HOM05D007228 ORTHO05D009099 3.3e-33 145.2 83 83.1
Carub.0006s0635 Capsella rubella HOM05D007228 ORTHO05D009099 4.3e-33 144.8 84 82.1
Thhalv10012911m.g Eutrema salsugineum HOM05D007228 ORTHO05D009099 5.6e-33 144.4 103 70.9
Aa31LG3G18990 Aethionema arabicum HOM05D007228 ORTHO05D009099 7.3e-33 144.1 87 79.3
BraA10t44962Z Brassica rapa HOM05D007228 ORTHO05D009099 9.5e-33 143.7 84 82.1
C09p69520 Brassica napus HOM05D007228 ORTHO05D009099 8.0e-32 140.6 84 79.8
BolC9t59696H Brassica oleracea HOM05D007228 ORTHO05D009099 8.0e-32 140.6 84 79.8
A10p29130 Brassica napus HOM05D007228 ORTHO05D009099 2.3e-31 139.0 84 78.6
BcaC06g32443 Brassica carinata HOM05D007228 ORTHO05D009099 3.0e-31 138.7 84 77.4
THA.LOC104819419 Tarenaya hassleriana HOM05D007228 ORTHO05D009099 9.2e-28 127.1 84 71.4
Atru.chr6.1953 Acer truncatum HOM05D007228 ORTHO05D009099 8.0e-24 114.0 84 66.7
Prupe.5G138400 Prunus persica HOM05D007228 ORTHO05D009099 5.2e-23 111.3 94 58.5
Ciclev10030919m.g Citrus clementina HOM05D007228 ORTHO05D009099 1.2e-22 110.2 94 57.4
FAN08G0661 Fragaria x ananassa HOM05D007228 ORTHO05D009099 1.2e-22 110.2 94 56.4
FAN04G0692 Fragaria x ananassa HOM05D007228 ORTHO05D009099 1.5e-22 109.8 94 55.3
Gohir.A12G195100 Gossypium hirsutum HOM05D007228 ORTHO05D009099 3.4e-22 108.6 85 60.0
Manes.06G128600 Manihot esculenta HOM05D007228 ORTHO05D009099 3.4e-22 108.6 84 64.3
RcHm_v2.0_Chr7g0188261 Rosa chinensis HOM05D007228 ORTHO05D009099 3.4e-22 108.6 84 59.5
FvH4_5g10000 Fragaria vesca HOM05D007228 ORTHO05D009099 4.4e-22 108.2 94 54.3
TWI39G0517 Tripterygium wilfordii HOM05D007228 ORTHO05D009099 5.8e-22 107.8 84 61.9
FAN18G1110 Fragaria x ananassa HOM05D007228 ORTHO05D009099 7.5e-22 107.5 94 54.3
Thecc.03G143400 Theobroma cacao HOM05D007228 ORTHO05D009099 2.2e-21 105.9 85 57.6
Cfa018687 Carpinus fangiana HOM05D007228 ORTHO05D009099 4.9e-21 104.8 84 58.3
Gohir.D12G197500 Gossypium hirsutum HOM05D007228 ORTHO05D009099 4.9e-21 104.8 85 57.6
Gorai.008G212000 Gossypium raimondii HOM05D007228 ORTHO05D009099 4.9e-21 104.8 85 57.6
COL.COLO4_37286 Corchorus olitorius HOM05D007228 ORTHO05D009099 8.3e-21 104.0 95 51.6
Haze_07072 Corylus avellana HOM05D007228 ORTHO05D009099 8.3e-21 104.0 84 57.1
Manes.14G042701 Manihot esculenta HOM05D007228 ORTHO05D009099 1.4e-20 103.2 84 59.5
Sabra15G0131800 Salix brachista HOM05D007228 ORTHO05D009099 1.9e-20 102.8 84 59.5
Potri.015G109700 Populus trichocarpa HOM05D007228 ORTHO05D009099 4.1e-20 101.7 84 59.5
QL10p000149 Quercus lobata HOM05D007228 ORTHO05D009099 5.4e-20 101.3 94 51.1
Lj4g0027006 Lotus japonicus HOM05D007228 ORTHO05D009099 1.0e-18 97.1 94 52.1
Duzib205G0703 Durio zibethinus HOM05D007228 ORTHO05D009099 1.7e-18 96.3 89 53.9
MD06G1128600 Malus domestica HOM05D007228 ORTHO05D009099 1.7e-18 96.3 119 45.4
VMungo0251G0919 Vigna mungo HOM05D007228 ORTHO05D009099 3.9e-18 95.1 84 54.8
GSVIVG01014990001 Vitis vinifera HOM05D007228 ORTHO05D009099 5.0e-18 94.7 94 54.3
Dinv13695 Davidia involucrata HOM05D007228 ORTHO05D009099 1.5e-17 93.2 84 53.6
Phvul.002G279800 Phaseolus vulgaris HOM05D007228 ORTHO05D009099 2.5e-17 92.4 94 51.1
Nitab4.5_0000976g0280 Nicotiana tabacum HOM05D007228 ORTHO05D009099 3.3e-17 92.0 83 50.6
TPR.G12794 Trifolium pratense HOM05D007228 ORTHO05D009099 4.3e-17 91.7 94 48.9
CAN.G1008.38 Capsicum annuum HOM05D007228 ORTHO05D009099 5.6e-17 91.3 83 53.0
Peaxi162Scf00314g00833 Petunia axillaris HOM05D007228 ORTHO05D009099 5.6e-17 91.3 83 53.0
Cpa.g.sc13.201 Carica papaya HOM05D007228 ORTHO05D009099 7.3e-17 90.9 99 44.4
Eucgr.E04338 Eucalyptus grandis HOM05D007228 ORTHO05D009099 9.5e-17 90.5 101 44.6
Lalb_Chr12g0202641 Lupinus albus HOM05D007228 ORTHO05D009099 9.5e-17 90.5 84 51.2
Rhsim08G0200200 Rhododendron simsii HOM05D007228 ORTHO05D009099 9.5e-17 90.5 84 52.4
Glyma.08G006100 Glycine max HOM05D007228 ORTHO05D009099 1.2e-16 90.1 94 50.0
vmacro19097 Vaccinium macrocarpon HOM05D007228 ORTHO05D009099 1.6e-16 89.7 94 47.9
arahy.Tifrunner.gnm1.ann1.E4K3LT Arachis hypogaea HOM05D007228 ORTHO05D009099 3.6e-16 88.6 94 48.9
arahy.Tifrunner.gnm1.ann1.RK1GDQ Arachis hypogaea HOM05D007228 ORTHO05D009099 4.7e-16 88.2 94 47.9
CSS0001938 Camellia sinensis var. sinensis HOM05D007228 ORTHO05D009099 4.7e-16 88.2 84 53.6
CSS0045118 Camellia sinensis var. sinensis HOM05D007228 ORTHO05D009099 4.7e-16 88.2 84 53.6
Nitab4.5_0011883g0020 Nicotiana tabacum HOM05D007228 ORTHO05D009099 6.2e-16 87.8 83 48.2
SalBow1G3473 Salvia bowleyana HOM05D007228 ORTHO05D009099 6.2e-16 87.8 83 49.4
Ca_16830_v3 Cicer arietinum L. HOM05D007228 ORTHO05D009099 1.1e-15 87.0 94 46.8
TAR629G1179 Trochodendron aralioides HOM05D007228 ORTHO05D009099 1.1e-15 87.0 84 50.0
Nn3g16198 Nelumbo nucifera HOM05D007228 ORTHO05D009099 2.3e-15 85.9 82 53.7
GSVIVG01035283001 Vitis vinifera HOM05D007228 ORTHO05D009099 2.3e-15 85.9 84 51.2
Medtr8g095540 Medicago truncatula HOM05D007228 ORTHO05D009099 3.1e-15 85.5 84 50.0
Psat7g040280 Pisum sativum HOM05D007228 ORTHO05D009099 3.1e-15 85.5 94 47.9
AUR62032199 Chenopodium quinoa HOM05D007228 ORTHO05D009099 5.2e-15 84.7 121 38.0
AUR62036968 Chenopodium quinoa HOM05D007228 ORTHO05D009099 5.2e-15 84.7 121 38.0
Aqoxy5G02968 Aquilegia oxysepala HOM05D007228 ORTHO05D009099 6.8e-15 84.3 84 46.4
PSO478G4831 Papaver somniferum HOM05D007228 ORTHO05D009099 8.9e-15 84.0 83 49.4
Sc04g0000080 Simmondsia chinensis HOM05D007228 ORTHO05D009099 8.9e-15 84.0 83 48.2
Sc04g0000120 Simmondsia chinensis HOM05D007228 ORTHO05D009099 8.9e-15 84.0 83 48.2
Solyc03g117990.1 Solanum lycopersicum HOM05D007228 ORTHO05D009099 2.0e-14 82.8 83 44.6
Sopen03g036890 Solanum pennellii HOM05D007228 ORTHO05D009099 2.0e-14 82.8 83 44.6
PSO017G4664 Papaver somniferum HOM05D007228 ORTHO05D009099 2.6e-14 82.4 83 48.2
Cc04_g05590 Coffea canephora HOM05D007228 ORTHO05D009099 5.8e-14 81.3 84 44.0
Psat0s3642g0120 Pisum sativum HOM05D007228 ORTHO05D009099 9.8e-14 80.5 84 48.8
Lsat_1_v5_gn_1_30460 Lactuca sativa HOM05D007228 ORTHO05D009099 1.3e-13 80.1 84 45.2
Hund02521 Selenicereus undatus HOM05D007228 ORTHO05D009099 2.2e-13 79.3 84 41.7
Hma1.2p1_0338F.1_g129520 Hydrangea macrophylla HOM05D007228 ORTHO05D009099 4.9e-13 78.2 94 42.6
EL10Ac5g11261 Beta vulgaris HOM05D007228 ORTHO05D009099 8.3e-13 77.4 100 43.0
MBI11_g17279_MAGBIO Magnolia biondii HOM05D007228 ORTHO05D009099 8.3e-13 77.4 85 44.7
Psat3g128520 Pisum sativum HOM05D007228 ORTHO05D009099 8.3e-13 77.4 92 44.6
Actinidia18280 Actinidia chinensis HOM05D007228 ORTHO05D009099 1.4e-12 76.6 72 51.4
ECA247G3190 Erigeron canadensis HOM05D007228 ORTHO05D009099 7.1e-12 74.3 84 44.0
Migut.D01167 Erythranthe guttata HOM05D007228 ORTHO05D009099 9.2e-12 73.9 84 41.7
HanXRQChr08g0229031 Helianthus annuus HOM05D007228 ORTHO05D009099 1.2e-11 73.6 84 42.9
Zm00001eb334150 Zea mays HOM05D007228 ORTHO05D009099 1.3e-10 70.1 86 39.5
Os01g0103900 Oryza sativa ssp. japonica HOM05D007228 ORTHO05D009099 1.9e-09 66.2 108 35.2
CsaV3_5G013390 Cucumis sativus L. HOM05D007228 ORTHO05D009099 1.2e-08 63.5 79 39.2
MELO3C018355.2 Cucumis melo HOM05D007228 ORTHO05D009099 2.8e-08 62.4 79 39.2
ClCG07G006120 Citrullus lanatus HOM05D007228 ORTHO05D009099 6.2e-08 61.2 93 36.6
CDE06G2808 Ceratophyllum demersum HOM05D007228 ORTHO05D009099 1.8e-07 59.7 85 38.8
Lj9C489T6 Lonicera japonica HOM05D007228 ORTHO05D009099 3.1e-07 58.9 86 43.0
Sed0011749 Sechium edule HOM05D007228 ORTHO05D009099 4.0e-07 58.5 91 31.9
SGA_v2.0_scaffold515G52653 Striga asiatica HOM05D007228 ORTHO05D009099 6.8e-07 57.8 105 37.1
TPR.G21492 Trifolium pratense HOM05D007228 ORTHO05D009099 1.5e-06 56.6 55 50.9


User provided reference genes

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