Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL468U10010 Arabidopsis lyrata HOM05D005479 ORTHO05D019704 2.0e-17 91.3 44 100.0
Carub.0008s0944 Capsella rubella HOM05D005479 ORTHO05D007756 5.0e-16 86.7 44 93.2
AL8G23370 Arabidopsis lyrata HOM05D005479 ORTHO05D007756 8.5e-16 85.9 44 93.2
AT5G49570 Arabidopsis thaliana HOM05D005479 ORTHO05D007756 5.5e-15 83.2 44 90.9
Sp2g19870 Schrenkiella parvula HOM05D005479 ORTHO05D007756 7.2e-15 82.8 44 86.4
Aa31LG11G8350 Aethionema arabicum HOM05D005479 ORTHO05D007756 3.6e-14 80.5 44 81.8
CARHR287990 Cardamine hirsuta HOM05D005479 ORTHO05D007756 6.8e-13 76.3 44 77.3
THA.LOC104818635 Tarenaya hassleriana HOM05D005479 ORTHO05D007756 1.2e-12 75.5 44 77.3
TWI74G0680 Tripterygium wilfordii HOM05D005479 ORTHO05D007756 1.5e-12 75.1 44 72.7
C07p39970 Brassica napus HOM05D005479 ORTHO05D007756 2.6e-12 74.3 44 72.7
BolC7t44530H Brassica oleracea HOM05D005479 ORTHO05D007756 2.6e-12 74.3 44 72.7
Lsat_1_v5_gn_4_140660 Lactuca sativa HOM05D005479 ORTHO05D007756 3.4e-12 73.9 44 70.5
Ciclev10000348m.g Citrus clementina HOM05D005479 ORTHO05D007756 4.4e-12 73.6 44 75.0
Hund22122 Selenicereus undatus HOM05D005479 ORTHO05D007756 4.4e-12 73.6 44 70.5
A06p38260 Brassica napus HOM05D005479 ORTHO05D007756 5.7e-12 73.2 44 70.5
BraA06t26741Z Brassica rapa HOM05D005479 ORTHO05D007756 5.7e-12 73.2 44 70.5
CSS0032146 Camellia sinensis var. sinensis HOM05D005479 ORTHO05D007756 5.7e-12 73.2 44 68.2
Peaxi162Scf00282g00225 Petunia axillaris HOM05D005479 ORTHO05D007756 7.5e-12 72.8 44 68.2
Rhsim07G0075700 Rhododendron simsii HOM05D005479 ORTHO05D007756 7.5e-12 72.8 44 72.7
Actinidia05775 Actinidia chinensis HOM05D005479 ORTHO05D007756 9.8e-12 72.4 42 73.8
Ah.06g192270 Amaranthus hybridus HOM05D005479 ORTHO05D007756 9.8e-12 72.4 44 65.9
EL10Ac4g09118 Beta vulgaris HOM05D005479 ORTHO05D007756 9.8e-12 72.4 44 70.5
AUR62001022 Chenopodium quinoa HOM05D005479 ORTHO05D007756 9.8e-12 72.4 44 68.2
AUR62004929 Chenopodium quinoa HOM05D005479 ORTHO05D007756 9.8e-12 72.4 44 68.2
Atru.chr2.800 Acer truncatum HOM05D005479 ORTHO05D007756 1.3e-11 72.0 44 70.5
HanXRQChr09g0254821 Helianthus annuus HOM05D005479 ORTHO05D007756 1.3e-11 72.0 44 68.2
vmacro13830 Vaccinium macrocarpon HOM05D005479 ORTHO05D007756 1.3e-11 72.0 44 72.7
Duzib177G1118 Durio zibethinus HOM05D005479 ORTHO05D007756 1.7e-11 71.6 44 70.5
COL.COLO4_15310 Corchorus olitorius HOM05D005479 ORTHO05D007756 3.7e-11 70.5 44 68.2
Nn7g38390 Nelumbo nucifera HOM05D005479 ORTHO05D007756 3.7e-11 70.5 44 68.2
DCAR_029737 Daucus carota HOM05D005479 ORTHO05D007756 4.8e-11 70.1 44 70.5
Nitab4.5_0004469g0060 Nicotiana tabacum HOM05D005479 ORTHO05D007756 4.8e-11 70.1 44 65.9
Dinv20863 Davidia involucrata HOM05D005479 ORTHO05D007756 1.1e-10 68.9 44 65.9
Migut.N01906 Erythranthe guttata HOM05D005479 ORTHO05D007756 1.1e-10 68.9 44 68.2
Gohir.A11G253600 Gossypium hirsutum HOM05D005479 ORTHO05D007756 1.1e-10 68.9 44 65.9
SalBow4G0205 Salvia bowleyana HOM05D005479 ORTHO05D007756 1.1e-10 68.9 44 70.5
SalBow4G0458 Salvia bowleyana HOM05D005479 ORTHO05D007756 1.1e-10 68.9 44 70.5
Aqoxy1G01374 Aquilegia oxysepala HOM05D005479 ORTHO05D007756 1.4e-10 68.6 44 68.2
Cc02_g31990 Coffea canephora HOM05D005479 ORTHO05D007756 1.4e-10 68.6 44 63.6
MD12G1238800 Malus domestica HOM05D005479 ORTHO05D007756 1.4e-10 68.6 44 68.2
Nitab4.5_0005582g0060 Nicotiana tabacum HOM05D005479 ORTHO05D019704 1.4e-10 68.6 44 63.6
Sc09g0003880 Simmondsia chinensis HOM05D005479 ORTHO05D007756 1.4e-10 68.6 44 65.9
GSVIVG01021825001 Vitis vinifera HOM05D005479 ORTHO05D007756 1.4e-10 68.6 44 65.9
CAN.G134.108 Capsicum annuum HOM05D005479 ORTHO05D007756 1.8e-10 68.2 44 65.9
Gorai.007G283500 Gossypium raimondii HOM05D005479 ORTHO05D007756 1.8e-10 68.2 44 65.9
SGA_v2.0_scaffold81G26086 Striga asiatica HOM05D005479 ORTHO05D007756 1.8e-10 68.2 44 65.9
Thecc.05G286400 Theobroma cacao HOM05D005479 ORTHO05D007756 1.8e-10 68.2 44 65.9
Haze_04347 Corylus avellana HOM05D005479 ORTHO05D007756 3.1e-10 67.4 44 68.2
Gohir.D11G263500 Gossypium hirsutum HOM05D005479 ORTHO05D007756 3.1e-10 67.4 44 63.6
PSO675G4284 Papaver somniferum HOM05D005479 ORTHO05D007756 3.1e-10 67.4 44 68.2
Eucgr.H04378 Eucalyptus grandis HOM05D005479 ORTHO05D007756 4.1e-10 67.0 42 64.3
Gorai.007G282800 Gossypium raimondii HOM05D005479 ORTHO05D019704 4.1e-10 67.0 42 64.3
TAR624G0950 Trochodendron aralioides HOM05D005479 ORTHO05D007756 4.1e-10 67.0 44 63.6
CiPaw.07G065500 Carya illinoinensis HOM05D005479 ORTHO05D007756 5.4e-10 66.6 44 68.2
CANSAT54G0735 Cannabis sativa HOM05D005479 ORTHO05D007756 7.0e-10 66.2 44 63.6
RcHm_v2.0_Chr3g0451381 Rosa chinensis HOM05D005479 ORTHO05D007756 7.0e-10 66.2 44 68.2
PSO541G1403 Papaver somniferum HOM05D005479 ORTHO05D007756 9.1e-10 65.9 44 65.9
Potri.013G039600 Populus trichocarpa HOM05D005479 ORTHO05D007756 9.1e-10 65.9 40 67.5
Solyc01g097440.3 Solanum lycopersicum HOM05D005479 ORTHO05D007756 9.1e-10 65.9 44 63.6
Sopen01g041110 Solanum pennellii HOM05D005479 ORTHO05D007756 9.1e-10 65.9 44 63.6
arahy.Tifrunner.gnm1.ann1.9C3ED3 Arachis hypogaea HOM05D005479 ORTHO05D007756 1.2e-09 65.5 44 61.4
arahy.Tifrunner.gnm1.ann1.A0PUBP Arachis hypogaea HOM05D005479 ORTHO05D007756 1.2e-09 65.5 44 61.4
FAN02G1208 Fragaria x ananassa HOM05D000352 ORTHO05D000260 1.2e-09 65.5 44 68.2
Thhalv10003714m.g Eutrema salsugineum HOM05D005479 ORTHO05D007756 2.0e-09 64.7 44 65.9
Cpa.g.sc117.80 Carica papaya HOM05D005479 ORTHO05D007756 2.7e-09 64.3 44 63.6
FvH4_6g03130 Fragaria vesca HOM05D005479 ORTHO05D007756 2.7e-09 64.3 44 65.9
FAN05G1441 Fragaria x ananassa HOM05D005479 ORTHO05D007756 2.7e-09 64.3 44 65.9
FAN05G3323 Fragaria x ananassa HOM05D005479 ORTHO05D007756 2.7e-09 64.3 44 65.9
FAN14G5841 Fragaria x ananassa HOM05D005479 ORTHO05D007756 2.7e-09 64.3 44 65.9
Lalb_Chr15g0076821 Lupinus albus HOM05D005479 ORTHO05D007756 2.7e-09 64.3 44 65.9
SHI18393 Sapria himalayana HOM05D005479 ORTHO05D007756 3.5e-09 63.9 44 63.6
Ca_09415_v3 Cicer arietinum L. HOM05D005479 ORTHO05D007756 4.5e-09 63.5 44 59.1
Medtr7g114940 Medicago truncatula HOM05D005479 ORTHO05D007756 4.5e-09 63.5 44 59.1
Prupe.6G341700 Prunus persica HOM05D005479 ORTHO05D007756 5.9e-09 63.2 44 63.6
unitig_21.g20055 Utricularia gibba HOM05D005479 ORTHO05D007756 5.9e-09 63.2 44 61.4
Glyma.03G246500 Glycine max HOM05D005479 ORTHO05D007756 7.7e-09 62.8 44 59.1
Manes.08G133100 Manihot esculenta HOM05D005479 ORTHO05D007756 7.7e-09 62.8 44 63.6
QL03p025023 Quercus lobata HOM05D005479 ORTHO05D007756 7.7e-09 62.8 44 61.4
Sabra13G0037000 Salix brachista HOM05D005479 ORTHO05D007756 1.0e-08 62.4 40 65.0
TPR.G7013 Trifolium pratense HOM05D005479 ORTHO05D007756 1.3e-08 62.0 44 56.8
VMungo0540G0884 Vigna mungo HOM05D005479 ORTHO05D007756 1.3e-08 62.0 44 59.1
Psat3g007760 Pisum sativum HOM05D005479 ORTHO05D007756 1.7e-08 61.6 44 59.1
Phvul.006G100800 Phaseolus vulgaris HOM05D005479 ORTHO05D007756 2.2e-08 61.2 44 59.1
ATR0763G186 Amborella trichopoda HOM05D005479 ORTHO05D007756 3.8e-08 60.5 41 61.0
Glyma.19G243900 Glycine max HOM05D005479 ORTHO05D007756 5.0e-08 60.1 44 56.8
Prupe.6G342000 Prunus persica HOM05D005479 ORTHO05D007756 6.5e-08 59.7 44 56.8
Lj1g0002084 Lotus japonicus HOM05D005479 ORTHO05D007756 1.5e-07 58.5 44 56.8
Zm00001eb105420 Zea mays HOM05D005479 ORTHO05D007756 9.4e-07 55.8 52 55.8
SEGI_17604 Sequoiadendron giganteum HOM05D005479 ORTHO05D007756 2.1e-06 54.7 44 56.8
Os07g0497400 Oryza sativa ssp. japonica HOM05D005479 ORTHO05D007756 8.0e-06 52.8 49 57.1


User provided reference genes

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