Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL428U10020 Arabidopsis lyrata HOM05D000292 ORTHO05D014388 1.7e-97 359.4 191 100.0
AL8G17250 Arabidopsis lyrata HOM05D000292 ORTHO05D000172 9.2e-83 310.5 268 69.0
AT5G43240 Arabidopsis thaliana HOM05D000292 ORTHO05D000172 3.5e-58 228.8 268 54.5
AT5G01120 Arabidopsis thaliana HOM05D000292 ORTHO05D000172 9.0e-54 214.2 265 52.1
Carub.0006s0075 Capsella rubella HOM05D000292 ORTHO05D000172 2.6e-53 212.6 265 52.1
AL6G11080 Arabidopsis lyrata HOM05D000292 ORTHO05D000172 8.4e-52 207.6 266 51.9
BraA10t45391Z Brassica rapa HOM05D000292 ORTHO05D000172 1.5e-48 196.8 265 47.5
A10p33600 Brassica napus HOM05D000292 ORTHO05D000172 5.7e-48 194.9 265 47.5
C09p74530 Brassica napus HOM05D000292 ORTHO05D000172 1.8e-46 189.9 265 47.5
BolC9t60185H Brassica oleracea HOM05D000292 ORTHO05D000172 1.8e-46 189.9 265 47.5
BcaNung02764 Brassica carinata HOM05D000292 ORTHO05D000172 5.3e-46 188.3 265 47.2
Carub.0006s0074 Capsella rubella HOM05D000292 ORTHO05D000172 2.2e-23 113.2 255 35.3
Sp7g01870 Schrenkiella parvula HOM05D000292 ORTHO05D000172 5.9e-21 105.1 140 47.1
AT5G01140 Arabidopsis thaliana HOM05D000292 ORTHO05D000172 1.0e-20 104.4 201 38.3
AL6G11090 Arabidopsis lyrata HOM05D000292 ORTHO05D000172 5.0e-20 102.1 262 32.1
A04p13060 Brassica napus HOM05D000292 ORTHO05D000172 2.5e-19 99.8 167 44.9
BraA04t16967Z Brassica rapa HOM05D000292 ORTHO05D000172 2.5e-19 99.8 167 44.9
AT5G01130 Arabidopsis thaliana HOM05D000292 ORTHO05D000172 1.2e-18 97.4 135 47.4
Sp6g40510 Schrenkiella parvula HOM05D000292 ORTHO05D000172 1.6e-18 97.1 208 36.1
A04p13080 Brassica napus HOM05D000292 ORTHO05D000172 1.4e-17 94.0 168 39.3
BraA10t45392Z Brassica rapa HOM05D000292 ORTHO05D000172 2.3e-17 93.2 191 37.7
AL1G22150 Arabidopsis lyrata HOM05D000292 ORTHO05D000172 5.2e-17 92.0 161 43.5
Carub.0001s1072 Capsella rubella HOM05D000292 ORTHO05D000172 8.8e-17 91.3 160 43.8
AL1G17320 Arabidopsis lyrata HOM05D000292 ORTHO05D000172 3.3e-16 89.4 203 35.5
BraA01t02544Z Brassica rapa HOM05D000292 ORTHO05D000172 7.5e-16 88.2 210 34.8
AL638U10010 Arabidopsis lyrata HOM05D000292 ORTHO05D000172 2.2e-15 86.7 159 40.3
Carub.0002s0600 Capsella rubella HOM05D000292 ORTHO05D000172 2.2e-15 86.7 187 38.5
CARHR211440 Cardamine hirsuta HOM05D000292 ORTHO05D000172 2.2e-15 86.7 156 41.0
BcaNung02761 Brassica carinata HOM05D000292 ORTHO05D000172 4.8e-15 85.5 260 33.1
Sp4g10500 Schrenkiella parvula HOM05D000292 ORTHO05D000172 6.3e-15 85.1 163 41.7
AL3G20190 Arabidopsis lyrata HOM05D000292 ORTHO05D000172 8.2e-15 84.7 250 31.6
BcaC05g29642 Brassica carinata HOM05D000292 ORTHO05D000172 8.2e-15 84.7 249 33.3
A01p26210 Brassica napus HOM05D000292 ORTHO05D000172 1.4e-14 84.0 236 31.4
A02p03280 Brassica napus HOM05D000292 ORTHO05D000172 1.4e-14 84.0 171 36.3
BraA02t05298Z Brassica rapa HOM05D000292 ORTHO05D000172 1.4e-14 84.0 171 36.3
AL6G11050 Arabidopsis lyrata HOM05D000292 ORTHO05D000172 1.8e-14 83.6 191 37.2
BolC4t26271H Brassica oleracea HOM05D000292 ORTHO05D000172 1.8e-14 83.6 156 37.8
BolC5t34533H Brassica oleracea HOM05D000292 ORTHO05D000172 1.8e-14 83.6 249 32.9
Sp5g15130 Schrenkiella parvula HOM05D000020 ORTHO05D000172 1.8e-14 83.6 258 32.2
C03p00640 Brassica napus HOM05D000292 ORTHO05D014388 2.4e-14 83.2 115 45.2
C03p08260 Brassica napus HOM05D000292 ORTHO05D014388 2.4e-14 83.2 115 45.2
A05p39770 Brassica napus HOM05D000292 ORTHO05D000172 3.1e-14 82.8 248 31.9
C05p58810 Brassica napus HOM05D000292 ORTHO05D000172 3.1e-14 82.8 249 32.9
BraA05t22760Z Brassica rapa HOM05D000292 ORTHO05D000172 3.1e-14 82.8 248 31.9
C04p46830 Brassica napus HOM05D000292 ORTHO05D000172 5.3e-14 82.0 163 36.2
THA.LOC104823279 Tarenaya hassleriana HOM05D000292 ORTHO05D000172 5.3e-14 82.0 150 38.7
AT5G37320 Arabidopsis thaliana HOM05D000292 ORTHO05D016587 9.1e-14 81.3 155 40.6
C01p33320 Brassica napus HOM05D000292 ORTHO05D000172 1.6e-13 80.5 213 31.5
THA.LOC104816225 Tarenaya hassleriana HOM05D000292 ORTHO05D000172 2.7e-13 79.7 230 30.0
AT3G09140 Arabidopsis thaliana HOM05D000292 ORTHO05D000172 3.5e-13 79.3 185 38.9
CARHR083500 Cardamine hirsuta HOM05D000292 ORTHO05D000172 3.5e-13 79.3 238 34.0
AT5G01150 Arabidopsis thaliana HOM05D000292 ORTHO05D000172 5.9e-13 78.6 157 38.2
BcaB01g06087 Brassica carinata HOM05D000292 ORTHO05D014388 1.0e-12 77.8 73 57.5
BolC1t03264H Brassica oleracea HOM05D000292 ORTHO05D000172 1.0e-12 77.8 236 29.7
BcaB01g06200 Brassica carinata HOM05D000292 ORTHO05D000172 1.3e-12 77.4 249 29.7
BcaC03g18457 Brassica carinata HOM05D000292 ORTHO05D000172 1.3e-12 77.4 171 34.5
A07p36650 Brassica napus HOM05D000292 ORTHO05D000172 1.3e-12 77.4 99 50.5
C02p08040 Brassica napus HOM05D000292 ORTHO05D000172 1.3e-12 77.4 171 34.5
C03p00660 Brassica napus HOM05D000292 ORTHO05D014388 1.3e-12 77.4 100 52.0
BolC2t06726H Brassica oleracea HOM05D000292 ORTHO05D000172 1.3e-12 77.4 171 34.5
BolC3t12629H Brassica oleracea HOM05D000292 ORTHO05D014388 1.3e-12 77.4 100 52.0
C06p44050 Brassica napus HOM05D000292 ORTHO05D000172 1.7e-12 77.0 102 49.0
TAR636G0285 Trochodendron aralioides HOM05D000292 ORTHO05D000172 1.7e-12 77.0 144 38.9
Thhalv10012284m.g Eutrema salsugineum HOM05D000292 ORTHO05D016587 2.2e-12 76.6 158 38.0
Sp1g34300 Schrenkiella parvula HOM05D000292 ORTHO05D000172 2.2e-12 76.6 144 38.9
Sp3g24320 Schrenkiella parvula HOM05D000292 ORTHO05D000172 3.8e-12 75.9 154 39.6
Aa31LG3G1640 Aethionema arabicum HOM05D000292 ORTHO05D000172 5.0e-12 75.5 156 37.2
Thhalv10009362m.g Eutrema salsugineum HOM05D000292 ORTHO05D000172 5.0e-12 75.5 143 39.9
TAR636G2800 Trochodendron aralioides HOM05D000292 ORTHO05D000172 5.0e-12 75.5 144 38.2
A07p06370 Brassica napus HOM05D000292 ORTHO05D000172 6.5e-12 75.1 130 40.8
BcaC09g49752 Brassica carinata HOM05D000292 ORTHO05D000172 8.5e-12 74.7 236 29.2
A04p13300 Brassica napus HOM05D000292 ORTHO05D000172 1.1e-11 74.3 102 47.1
Gohir.A01G224500 Gossypium hirsutum HOM05D000292 ORTHO05D000172 2.5e-11 73.2 139 37.4
BcaB06g27454 Brassica carinata HOM05D000292 ORTHO05D000172 3.2e-11 72.8 141 40.4
BolC6t39478H Brassica oleracea HOM05D000292 ORTHO05D000172 3.2e-11 72.8 144 41.0
CARHR107070 Cardamine hirsuta HOM05D000292 ORTHO05D000172 3.2e-11 72.8 141 36.9
BraA07t30755Z Brassica rapa HOM05D000292 ORTHO05D000172 4.2e-11 72.4 107 47.7
Carub.0003s0828 Capsella rubella HOM05D000292 ORTHO05D000172 4.2e-11 72.4 164 37.2
THA.LOC104816224 Tarenaya hassleriana HOM05D000292 ORTHO05D000172 4.2e-11 72.4 90 52.2
CARHR107080 Cardamine hirsuta HOM05D000292 ORTHO05D000172 5.5e-11 72.0 93 49.5
A10p33610 Brassica napus HOM05D005357 ORTHO05D006354 9.4e-11 71.2 241 30.3
C06p36280 Brassica napus HOM05D000292 ORTHO05D000172 9.4e-11 71.2 107 47.7
BraA04t16988Z Brassica rapa HOM05D000292 ORTHO05D000172 9.4e-11 71.2 102 46.1
Thhalv10002899m.g Eutrema salsugineum HOM05D000292 ORTHO05D000172 9.4e-11 71.2 235 31.5
C07p09510 Brassica napus HOM05D000292 ORTHO05D000172 1.2e-10 70.9 152 36.8
BcaNung02208 Brassica carinata HOM05D000292 ORTHO05D000172 1.6e-10 70.5 93 45.2
BcaNung07339 Brassica carinata HOM05D000292 ORTHO05D000172 1.6e-10 70.5 102 45.1
C09p74540 Brassica napus HOM05D005357 ORTHO05D006354 1.6e-10 70.5 140 37.9
BolC9t60186H Brassica oleracea HOM05D005357 ORTHO05D006354 1.6e-10 70.5 140 37.9
C04p47080 Brassica napus HOM05D000292 ORTHO05D000172 2.1e-10 70.1 98 46.9
BolC4t26302H Brassica oleracea HOM05D000292 ORTHO05D000172 2.1e-10 70.1 98 46.9
AL2G25360 Arabidopsis lyrata HOM05D000292 ORTHO05D014388 2.7e-10 69.7 116 42.2
BolC3t13333H Brassica oleracea HOM05D000292 ORTHO05D014388 3.6e-10 69.3 109 47.7
BcaB03g15530 Brassica carinata HOM05D000292 ORTHO05D000172 6.1e-10 68.6 107 45.8
Thhalv10012106m.g Eutrema salsugineum HOM05D000292 ORTHO05D000172 6.1e-10 68.6 155 37.4
BcaC08g45841 Brassica carinata HOM05D000292 ORTHO05D000172 8.0e-10 68.2 107 46.7
BolC6t38750H Brassica oleracea HOM05D000292 ORTHO05D000172 8.0e-10 68.2 107 46.7
BolC7t41380H Brassica oleracea HOM05D000292 ORTHO05D000172 8.0e-10 68.2 127 39.4
AL6G14060 Arabidopsis lyrata HOM05D000292 ORTHO05D014388 1.8e-09 67.0 120 37.5
Carub.0001s1073 Capsella rubella HOM05D000292 ORTHO05D000172 1.8e-09 67.0 71 53.5
C05p58800 Brassica napus HOM05D000292 ORTHO05D000172 2.3e-09 66.6 140 37.1
Aqoxy1G00757 Aquilegia oxysepala HOM05D000292 ORTHO05D000172 3.0e-09 66.2 167 29.9
AL9U10500 Arabidopsis lyrata HOM05D001832 ORTHO05D001861 4.0e-09 65.9 74 51.4
BcaB04g17549 Brassica carinata HOM05D000292 ORTHO05D000172 5.2e-09 65.5 240 30.0
CARHR215750 Cardamine hirsuta HOM05D000292 ORTHO05D016587 6.8e-09 65.1 130 36.2
AL1G22160 Arabidopsis lyrata HOM05D000292 ORTHO05D000172 8.8e-09 64.7 169 34.9
AL2G24510 Arabidopsis lyrata HOM05D000292 ORTHO05D000172 1.2e-08 64.3 194 30.4
A07p31220 Brassica napus HOM05D000292 ORTHO05D000172 1.2e-08 64.3 107 45.8
CARHR211450 Cardamine hirsuta HOM05D000292 ORTHO05D000172 2.0e-08 63.5 181 31.5
CARHR107060 Cardamine hirsuta HOM05D000292 ORTHO05D000172 2.6e-08 63.2 115 38.3
BcaB06g26865 Brassica carinata HOM05D000292 ORTHO05D000172 3.4e-08 62.8 125 35.2
BcaC08g46466 Brassica carinata HOM05D000292 ORTHO05D000172 4.4e-08 62.4 89 46.1
DCAR_016318 Daucus carota HOM05D000292 ORTHO05D000172 5.7e-08 62.0 70 51.4
Duzib170G0100 Durio zibethinus HOM05D000292 ORTHO05D000172 5.7e-08 62.0 103 38.8
Medtr7g066350 Medicago truncatula HOM05D000292 ORTHO05D000172 5.7e-08 62.0 77 45.5
TPR.G2275 Trifolium pratense HOM05D000292 ORTHO05D000172 5.7e-08 62.0 77 42.9
TAR636G3084 Trochodendron aralioides HOM05D000292 ORTHO05D000172 5.7e-08 62.0 69 49.3
TAR636G3432 Trochodendron aralioides HOM05D000292 ORTHO05D000172 5.7e-08 62.0 67 49.3
COL.COLO4_19075 Corchorus olitorius HOM05D000292 ORTHO05D000172 7.5e-08 61.6 80 45.0
Glyma.18G194700 Glycine max HOM05D000292 ORTHO05D000172 7.5e-08 61.6 109 37.6
Glyma.18G194800 Glycine max HOM05D000292 ORTHO05D000172 7.5e-08 61.6 109 37.6
HanXRQChr09g0241231 Helianthus annuus HOM05D000292 ORTHO05D000172 7.5e-08 61.6 70 51.4
Lj1g0012967 Lotus japonicus HOM05D000292 ORTHO05D000172 7.5e-08 61.6 95 43.2
TAR636G1917 Trochodendron aralioides HOM05D000292 ORTHO05D000172 7.5e-08 61.6 67 49.3
COL.COLO4_19074 Corchorus olitorius HOM05D000292 ORTHO05D000172 9.8e-08 61.2 77 46.8
Thecc.09G308800 Theobroma cacao HOM05D000292 ORTHO05D000172 9.8e-08 61.2 103 37.9
TAR636G2636 Trochodendron aralioides HOM05D000292 ORTHO05D000172 9.8e-08 61.2 67 46.3
BolC3t12628H Brassica oleracea HOM05D000292 ORTHO05D014388 1.7e-07 60.5 72 45.8
BolC3t13335H Brassica oleracea HOM05D000292 ORTHO05D014388 1.7e-07 60.5 72 45.8
Medtr7g066280 Medicago truncatula HOM05D000292 ORTHO05D000172 1.7e-07 60.5 105 43.8
BraA07t31233Z Brassica rapa HOM05D000292 ORTHO05D000172 2.2e-07 60.1 56 57.1
Medtr7g066260 Medicago truncatula HOM05D000292 ORTHO05D000172 2.2e-07 60.1 111 38.7
Aa31LG1G3750 Aethionema arabicum HOM05D000292 ORTHO05D000172 2.8e-07 59.7 73 45.2
TAR636G2411 Trochodendron aralioides HOM05D000292 ORTHO05D000172 3.7e-07 59.3 141 37.6
Medtr7g066340 Medicago truncatula HOM05D000292 ORTHO05D000172 4.8e-07 58.9 158 35.4
MSTRG.6572 Avicennia marina HOM05D000292 ORTHO05D000172 6.3e-07 58.5 153 30.7
CSS0021970 Camellia sinensis var. sinensis HOM05D000292 ORTHO05D000172 6.3e-07 58.5 116 37.1
Phvul.008G110700 Phaseolus vulgaris HOM05D000292 ORTHO05D000172 6.3e-07 58.5 82 42.7
Sabra16G0150200 Salix brachista HOM05D000292 ORTHO05D000172 6.3e-07 58.5 122 34.4
TPR.G1577 Trifolium pratense HOM05D000292 ORTHO05D000172 6.3e-07 58.5 77 42.9
AL1G22140 Arabidopsis lyrata HOM05D000292 ORTHO05D000172 8.3e-07 58.2 153 37.3
Dinv14485 Davidia involucrata HOM05D000292 ORTHO05D000172 8.3e-07 58.2 95 41.1
ECA240G2816 Erigeron canadensis HOM05D000292 ORTHO05D000172 8.3e-07 58.2 114 35.1
Psat5g040960 Pisum sativum HOM05D000292 ORTHO05D000172 8.3e-07 58.2 121 33.1
TPR.G1548 Trifolium pratense HOM05D000292 ORTHO05D000172 8.3e-07 58.2 76 42.1
TAR636G2896 Trochodendron aralioides HOM05D000292 ORTHO05D000172 8.3e-07 58.2 71 43.7
HanXRQChr09g0241221 Helianthus annuus HOM05D000292 ORTHO05D000172 1.1e-06 57.8 140 35.0
Lj1g0016229 Lotus japonicus HOM05D000292 ORTHO05D000172 1.1e-06 57.8 90 42.2
Medtr1g041315 Medicago truncatula HOM05D000292 ORTHO05D000172 1.1e-06 57.8 112 33.0
Phvul.008G110500 Phaseolus vulgaris HOM05D000292 ORTHO05D000172 1.1e-06 57.8 69 43.5
TPR.G1549 Trifolium pratense HOM05D000292 ORTHO05D000172 1.1e-06 57.8 96 38.5
VMungo0720G0457 Vigna mungo HOM05D000292 ORTHO05D000172 1.1e-06 57.8 59 44.1
Aqoxy1G00750 Aquilegia oxysepala HOM05D000292 ORTHO05D000172 1.4e-06 57.4 65 49.2
Medtr7g066310 Medicago truncatula HOM05D000292 ORTHO05D000172 1.4e-06 57.4 105 41.9
Psat4g099600 Pisum sativum HOM05D000292 ORTHO05D000172 1.4e-06 57.4 121 35.5
Thecc.09G308900 Theobroma cacao HOM05D000292 ORTHO05D000172 1.4e-06 57.4 86 41.9
TPR.G34867 Trifolium pratense HOM05D000292 ORTHO05D000172 1.4e-06 57.4 103 40.8
CSS0004000 Camellia sinensis var. sinensis HOM05D000292 ORTHO05D000172 1.8e-06 57.0 86 43.0
Dinv28592 Davidia involucrata HOM05D000292 ORTHO05D000172 1.8e-06 57.0 79 39.2
Phvul.008G110200 Phaseolus vulgaris HOM05D000292 ORTHO05D000172 1.8e-06 57.0 66 42.4
Medtr7g066400 Medicago truncatula HOM05D000292 ORTHO05D000172 2.4e-06 56.6 77 41.6
Nitab4.5_0008658g0010 Nicotiana tabacum HOM05D000292 ORTHO05D000172 2.4e-06 56.6 110 38.2
BcaNung05571 Brassica carinata HOM05D000292 ORTHO05D000172 3.1e-06 56.2 60 51.7
A05p39760 Brassica napus HOM05D000292 ORTHO05D000172 3.1e-06 56.2 103 41.7
C05p15900 Brassica napus HOM05D000292 ORTHO05D000172 3.1e-06 56.2 60 51.7
BolC5t30294H Brassica oleracea HOM05D000292 ORTHO05D000172 3.1e-06 56.2 60 51.7
BraA05t22759Z Brassica rapa HOM05D000292 ORTHO05D000172 3.1e-06 56.2 103 41.7
Ca_09163_v3 Cicer arietinum L. HOM05D000292 ORTHO05D000172 3.1e-06 56.2 105 37.1
Dinv17078 Davidia involucrata HOM05D000292 ORTHO05D000172 3.1e-06 56.2 95 36.8
Dinv43022 Davidia involucrata HOM05D000292 ORTHO05D000172 3.1e-06 56.2 95 36.8
Dinv43076 Davidia involucrata HOM05D000292 ORTHO05D000172 3.1e-06 56.2 95 36.8
Duzib168G0276 Durio zibethinus HOM05D000292 ORTHO05D000172 3.1e-06 56.2 86 40.7
Psat3g131640 Pisum sativum HOM05D000292 ORTHO05D000172 3.1e-06 56.2 134 32.1
ECA240G4293 Erigeron canadensis HOM05D000292 ORTHO05D000172 4.1e-06 55.8 77 41.6
Prupe.6G064100 Prunus persica HOM05D000292 ORTHO05D000172 4.1e-06 55.8 119 35.3
C08p06630 Brassica napus HOM05D000292 ORTHO05D000172 5.4e-06 55.5 48 60.4
Psat3g135120 Pisum sativum HOM05D000292 ORTHO05D000172 5.4e-06 55.5 85 40.0
arahy.Tifrunner.gnm1.ann1.8PX07I Arachis hypogaea HOM05D000292 ORTHO05D000172 7.0e-06 55.1 71 47.9
HanXRQChr09g0241211 Helianthus annuus HOM05D000292 ORTHO05D000172 7.0e-06 55.1 150 30.7
Lj1g0023764 Lotus japonicus HOM05D000292 ORTHO05D000172 7.0e-06 55.1 120 38.3
Medtr7g066360 Medicago truncatula HOM05D000292 ORTHO05D000172 7.0e-06 55.1 114 34.2
Medtr7g066430 Medicago truncatula HOM05D000292 ORTHO05D000172 7.0e-06 55.1 69 43.5
TPR.G34868 Trifolium pratense HOM05D000292 ORTHO05D000172 7.0e-06 55.1 69 46.4
TAR636G0800 Trochodendron aralioides HOM05D000292 ORTHO05D000172 7.0e-06 55.1 139 36.0
CSS0007252 Camellia sinensis var. sinensis HOM05D000292 ORTHO05D000172 9.1e-06 54.7 93 40.9
CSS0027918 Camellia sinensis var. sinensis HOM05D000292 ORTHO05D000172 9.1e-06 54.7 93 40.9
Glyma.18G194200 Glycine max HOM05D000292 ORTHO05D000172 9.1e-06 54.7 82 41.5
HanXRQChr03g0074661 Helianthus annuus HOM05D000292 ORTHO05D000172 9.1e-06 54.7 71 39.4
Hma1.2p1_0710F.1_g207430 Hydrangea macrophylla HOM05D000292 ORTHO05D000172 9.1e-06 54.7 85 40.0
Medtr7g066570 Medicago truncatula HOM05D000292 ORTHO05D000172 9.1e-06 54.7 76 40.8
TPR.G34874 Trifolium pratense HOM05D000292 ORTHO05D000172 9.1e-06 54.7 77 41.6
TAR636G1912 Trochodendron aralioides HOM05D000292 ORTHO05D000172 9.1e-06 54.7 159 35.2
VMungo1383G1253 Vigna mungo HOM05D000292 ORTHO05D000172 9.1e-06 54.7 82 39.0


User provided reference genes

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