Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL401U10010 Arabidopsis lyrata HOM05D006222 ORTHO05D007677 2.9e-149 531.9 285 100.0
AL4G41770 Arabidopsis lyrata HOM05D006222 ORTHO05D007677 1.1e-148 530.0 285 99.6
AT2G43110 Arabidopsis thaliana HOM05D006222 ORTHO05D007677 6.7e-138 494.2 289 90.7
Carub.0004s2559 Capsella rubella HOM05D006222 ORTHO05D007677 3.8e-125 451.8 282 83.7
Sp4g25240 Schrenkiella parvula HOM05D006222 ORTHO05D007677 7.5e-113 411.0 285 75.8
CARHR138180 Cardamine hirsuta HOM05D006222 ORTHO05D007677 9.8e-113 410.6 285 76.5
Thhalv10017033m.g Eutrema salsugineum HOM05D006222 ORTHO05D007677 2.0e-110 402.9 284 79.2
C04p04200 Brassica napus HOM05D006222 ORTHO05D007677 5.0e-109 398.3 285 75.4
BolC4t22057H Brassica oleracea HOM05D006222 ORTHO05D007677 5.0e-109 398.3 285 75.4
BcaNung03540 Brassica carinata HOM05D006222 ORTHO05D007677 6.6e-109 397.9 285 74.7
BraA05t19346Z Brassica rapa HOM05D006222 ORTHO05D007677 1.4e-106 390.2 285 73.7
BcaC02g12413 Brassica carinata HOM05D006222 ORTHO05D007677 1.2e-105 387.1 284 72.2
A05p03600 Brassica napus HOM05D006222 ORTHO05D007677 1.2e-105 387.1 285 73.0
Aa31LG1G24920 Aethionema arabicum HOM05D006222 ORTHO05D007677 3.0e-93 345.9 298 64.1
THA.LOC104804896 Tarenaya hassleriana HOM05D006222 ORTHO05D007677 8.6e-85 317.8 275 62.2
Prupe.1G180600 Prunus persica HOM05D006222 ORTHO05D007677 1.7e-77 293.5 217 65.4
GSVIVG01031673001 Vitis vinifera HOM05D006222 ORTHO05D007677 1.5e-76 290.4 218 62.4
Aqoxy5G00038 Aquilegia oxysepala HOM05D006222 ORTHO05D007677 5.6e-76 288.5 228 63.2
Sabra14G0113700 Salix brachista HOM05D006222 ORTHO05D007677 5.6e-76 288.5 267 56.6
Cfa008558 Carpinus fangiana HOM05D006222 ORTHO05D007677 7.3e-76 288.1 274 54.7
COL.COLO4_07298 Corchorus olitorius HOM05D006222 ORTHO05D007677 8.1e-75 284.6 214 65.0
Ciclev10021532m.g Citrus clementina HOM05D006222 ORTHO05D007677 1.1e-74 284.3 203 69.5
TAR362G1090 Trochodendron aralioides HOM05D006222 ORTHO05D007677 1.1e-74 284.3 231 62.8
Atru.chr3.1674 Acer truncatum HOM05D006222 ORTHO05D007677 1.4e-74 283.9 234 62.0
Duzib268G0300 Durio zibethinus HOM05D006222 ORTHO05D007677 1.8e-74 283.5 212 64.6
DCAR_027540 Daucus carota HOM05D006222 ORTHO05D007677 4.0e-74 282.3 215 65.1
CiPaw.02G058300 Carya illinoinensis HOM05D006222 ORTHO05D007677 5.3e-74 282.0 279 57.0
Thecc.04G181000 Theobroma cacao HOM05D006222 ORTHO05D007677 9.0e-74 281.2 282 56.4
RcHm_v2.0_Chr4g0409281 Rosa chinensis HOM05D006222 ORTHO05D007677 1.2e-73 280.8 231 61.5
Cc03_g10460 Coffea canephora HOM05D006222 ORTHO05D007677 2.0e-73 280.0 218 67.4
Gohir.A10G136100 Gossypium hirsutum HOM05D006222 ORTHO05D007677 2.0e-73 280.0 210 64.3
Gorai.011G144300 Gossypium raimondii HOM05D006222 ORTHO05D007677 2.0e-73 280.0 210 64.8
EL10Ac5g11641 Beta vulgaris HOM05D006222 ORTHO05D007677 2.6e-73 279.6 218 62.4
CANSAT78G1479 Cannabis sativa HOM05D006222 ORTHO05D007677 2.6e-73 279.6 280 58.6
TWI63G0082 Tripterygium wilfordii HOM05D006222 ORTHO05D007677 4.4e-73 278.9 255 58.0
Rhsim09G0036800 Rhododendron simsii HOM05D006222 ORTHO05D007677 5.8e-73 278.5 225 61.8
MD04G1034000 Malus domestica HOM05D006222 ORTHO05D007677 7.6e-73 278.1 238 58.8
Oeu034479.1 Olea europaea HOM05D006222 ORTHO05D007677 9.9e-73 277.7 239 60.7
Gohir.D10G130500 Gossypium hirsutum HOM05D006222 ORTHO05D007677 1.7e-72 276.9 210 64.3
Manes.11G113101 Manihot esculenta HOM05D006222 ORTHO05D007677 1.4e-71 273.9 212 61.3
SGA_v2.0_scaffold31G12583 Striga asiatica HOM05D006222 ORTHO05D007677 1.9e-71 273.5 255 56.5
CSS0002349 Camellia sinensis var. sinensis HOM05D006222 ORTHO05D007677 5.4e-71 271.9 204 66.2
CSS0005997 Camellia sinensis var. sinensis HOM05D006222 ORTHO05D007677 5.4e-71 271.9 204 65.7
FvH4_4g11840 Fragaria vesca HOM05D006222 ORTHO05D007677 5.4e-71 271.9 230 60.9
Lalb_Chr06g0164621 Lupinus albus HOM05D006222 ORTHO05D007677 5.4e-71 271.9 237 59.5
Lj3P863T15 Lonicera japonica HOM05D006222 ORTHO05D007677 9.3e-71 271.2 220 62.7
FAN12G2296 Fragaria x ananassa HOM05D006222 ORTHO05D007677 2.7e-70 269.6 230 60.9
Eucgr.A00219 Eucalyptus grandis HOM05D006222 ORTHO05D007677 3.5e-70 269.2 214 60.7
CDE05G0624 Ceratophyllum demersum HOM05D006222 ORTHO05D007677 4.6e-70 268.9 228 57.9
Duzib212G0460 Durio zibethinus HOM05D006222 ORTHO05D007677 4.6e-70 268.9 206 64.1
CsaV3_4G003830 Cucumis sativus L. HOM05D006222 ORTHO05D007677 3.0e-69 266.2 277 53.1
HanXRQChr14g0432081 Helianthus annuus HOM05D006222 ORTHO05D007677 3.9e-69 265.8 213 59.2
Sed0019288 Sechium edule HOM05D006222 ORTHO05D007677 6.6e-69 265.0 226 59.3
Hund13303 Selenicereus undatus HOM05D006222 ORTHO05D007677 1.1e-68 264.2 238 55.9
PGR083G0744 Punica granatum HOM05D006222 ORTHO05D007677 1.5e-68 263.8 206 60.2
SalBow3G0382 Salvia bowleyana HOM05D006222 ORTHO05D007677 2.5e-68 263.1 222 60.8
Sc07g0007090 Simmondsia chinensis HOM05D006222 ORTHO05D007677 2.5e-68 263.1 287 49.5
ClCG07G016700 Citrullus lanatus HOM05D006222 ORTHO05D007677 3.3e-68 262.7 227 59.0
FAN12G2611 Fragaria x ananassa HOM05D006222 ORTHO05D007677 4.3e-68 262.3 244 57.4
PSO357G0657 Papaver somniferum HOM05D006222 ORTHO05D007677 4.3e-68 262.3 231 59.3
Ca_11418_v3 Cicer arietinum L. HOM05D006222 ORTHO05D007677 1.3e-67 260.8 217 59.9
PSO170G0570 Papaver somniferum HOM05D006222 ORTHO05D007677 1.3e-67 260.8 231 60.2
Psat0s4086g0080 Pisum sativum HOM05D006222 ORTHO05D007677 4.8e-67 258.8 214 60.3
CDE05G2371 Ceratophyllum demersum HOM05D006222 ORTHO05D007677 1.1e-66 257.7 230 56.5
FAN17G0755 Fragaria x ananassa HOM05D006222 ORTHO05D007677 1.4e-66 257.3 221 60.2
MSTRG.24605 Avicennia marina HOM05D006222 ORTHO05D007677 1.8e-66 256.9 204 63.2
Glyma.20G248400 Glycine max HOM05D006222 ORTHO05D007677 1.8e-66 256.9 214 59.8
Medtr1g116820 Medicago truncatula HOM05D006222 ORTHO05D007677 5.3e-66 255.4 208 60.1
Hma1.2p1_1477F.1_g285900 Hydrangea macrophylla HOM05D006222 ORTHO05D007677 1.2e-65 254.2 184 65.2
ECA232G0640 Erigeron canadensis HOM05D006222 ORTHO05D007677 2.6e-65 253.1 208 58.7
MELO3C017672.2 Cucumis melo HOM05D006222 ORTHO05D007677 4.5e-65 252.3 261 53.6
PGSC0003DMG400013073 Solanum tuberosum HOM05D006222 ORTHO05D007677 7.6e-65 251.5 214 59.8
ATR1089G038 Amborella trichopoda HOM05D006222 ORTHO05D007677 1.3e-64 250.8 225 56.0
Nn3g20171 Nelumbo nucifera HOM05D006222 ORTHO05D007677 1.3e-64 250.8 269 52.4
Ah.12g062130 Amaranthus hybridus HOM05D006222 ORTHO05D007677 1.7e-64 250.4 208 60.1
arahy.Tifrunner.gnm1.ann1.S0FJR3 Arachis hypogaea HOM05D006222 ORTHO05D007677 2.2e-64 250.0 216 57.4
arahy.Tifrunner.gnm1.ann1.VRQF1E Arachis hypogaea HOM05D006222 ORTHO05D007677 3.8e-64 249.2 214 57.9
Sopen05g032350 Solanum pennellii HOM05D006222 ORTHO05D007677 3.8e-64 249.2 214 59.3
TPR.G8895 Trifolium pratense HOM05D006222 ORTHO05D007677 5.4e-63 245.4 226 57.1
Migut.N00436 Erythranthe guttata HOM05D006222 ORTHO05D007677 1.2e-62 244.2 228 55.3
Lj5g0022978 Lotus japonicus HOM05D006222 ORTHO05D007677 2.1e-62 243.4 214 56.5
Potri.014G150100 Populus trichocarpa HOM05D006222 ORTHO05D007677 7.9e-62 241.5 179 65.9
Dinv22662 Davidia involucrata HOM05D006222 ORTHO05D007677 1.3e-61 240.7 178 68.5
Actinidia32943 Actinidia chinensis HOM05D006222 ORTHO05D007677 3.9e-61 239.2 182 62.6
Phvul.007G002100 Phaseolus vulgaris HOM05D006222 ORTHO05D007677 2.5e-60 236.5 212 55.2
VMungo0720G0284 Vigna mungo HOM05D006222 ORTHO05D007677 9.6e-60 234.6 194 58.2
Os04g0348100 Oryza sativa ssp. japonica HOM05D006222 ORTHO05D007677 5.3e-58 228.8 216 53.2
FvH4_6g25320 Fragaria vesca HOM05D006222 ORTHO05D007677 2.2e-56 223.4 230 52.6
PGSC0003DMG400023306 Solanum tuberosum HOM05D006222 ORTHO05D007677 2.2e-56 223.4 181 62.4
CAN.G1310.8 Capsicum annuum HOM05D006222 ORTHO05D007677 8.4e-56 221.5 181 62.4
Peaxi162Scf00423g00727 Petunia axillaris HOM05D006222 ORTHO05D007677 8.4e-56 221.5 180 63.3
Lsat_1_v5_gn_2_38021 Lactuca sativa HOM05D006222 ORTHO05D007677 4.2e-55 219.2 191 59.7
vmacro22720 Vaccinium macrocarpon HOM05D006222 ORTHO05D007677 5.5e-55 218.8 185 61.6
Ah.12g060860 Amaranthus hybridus HOM05D006222 ORTHO05D007677 2.3e-53 213.4 208 54.8
SMO331G0016 Selaginella moellendorffii HOM05D006222 ORTHO05D007677 7.4e-52 208.4 200 52.5
unitig_578.g15951 Utricularia gibba HOM05D006222 ORTHO05D007677 1.2e-49 201.1 229 48.5
AUR62029129 Chenopodium quinoa HOM05D006222 ORTHO05D007677 1.0e-48 198.0 215 49.8
Solyc05g053880.4 Solanum lycopersicum HOM05D006222 ORTHO05D007677 6.5e-48 195.3 175 57.7
Zm00001eb086320 Zea mays HOM05D006222 ORTHO05D007677 6.5e-48 195.3 180 55.0
Mapoly0037s0098 Marchantia polymorpha HOM05D006222 ORTHO05D007677 9.3e-47 191.4 227 44.5
Actinidia35881 Actinidia chinensis HOM05D006222 ORTHO05D007677 3.3e-44 183.0 174 52.3
Pp3c6_17250 Physcomitrium patens HOM05D006222 ORTHO05D007677 5.7e-44 182.2 198 44.9
QL10p043789 Quercus lobata HOM05D006222 ORTHO05D007677 1.0e-40 171.4 128 66.4
CBR_g19109 Chara braunii HOM05D006222 ORTHO05D007677 3.8e-40 169.5 195 45.6
QL10p047309 Quercus lobata HOM05D006222 ORTHO05D007677 1.6e-38 164.1 186 50.0
FAN05G2938 Fragaria x ananassa HOM05D006222 ORTHO05D007677 8.8e-37 158.3 132 62.1
RhsimUnG0147000 Rhododendron simsii HOM05D006222 ORTHO05D007677 5.7e-36 155.6 232 43.5
Nitab4.5_0000161g0130 Nicotiana tabacum HOM05D006222 ORTHO05D007677 1.7e-35 154.1 212 43.4
Rhsim04G0094000 Rhododendron simsii HOM05D006222 ORTHO05D007677 3.1e-34 149.8 260 39.6
QL10p043792 Quercus lobata HOM05D006222 ORTHO05D007677 4.1e-34 149.4 94 76.6
QL10p047312 Quercus lobata HOM05D006222 ORTHO05D007677 9.1e-34 148.3 94 76.6
AUR62014992 Chenopodium quinoa HOM05D006222 ORTHO05D007677 2.6e-33 146.7 176 44.3
Haze_11067 Corylus avellana HOM05D006222 ORTHO05D007677 6.5e-32 142.1 85 74.1
Nitab4.5_0007578g0020 Nicotiana tabacum HOM05D006222 ORTHO05D007677 1.0e-29 134.8 212 40.1
Eucgr.L00544 Eucalyptus grandis HOM05D006222 ORTHO05D007677 1.8e-29 134.0 123 53.7
CSS0048231 Camellia sinensis var. sinensis HOM05D006222 ORTHO05D007677 1.5e-25 120.9 95 60.0
MD13G1276400 Malus domestica HOM05D006222 ORTHO05D007677 2.6e-25 120.2 185 40.0
Haze_11066 Corylus avellana HOM05D006222 ORTHO05D007677 1.3e-24 117.9 165 42.4
HPP92_024563 Vanilla planifolia HOM05D006222 ORTHO05D007677 5.0e-24 115.9 95 58.9
Duzib268G0844 Durio zibethinus HOM05D006222 ORTHO05D007677 1.1e-23 114.8 98 55.1
Actinidia27187 Actinidia chinensis HOM05D006222 ORTHO05D007677 2.6e-20 103.6 155 43.2
Ah.12g060290 Amaranthus hybridus HOM05D006222 ORTHO05D007677 2.0e-17 94.0 61 68.9
A03p23980 Brassica napus HOM05D006222 ORTHO05D007677 1.1e-15 88.2 62 66.1
AagrBONN_evm.TU.Sc2ySwM_362.227 Anthoceros agrestis HOM05D006222 ORTHO05D007677 1.0e-13 81.6 153 37.3
BcaC01g05263 Brassica carinata HOM05D006222 ORTHO05D007677 1.1e-07 61.6 42 76.2
C03p28590 Brassica napus HOM05D006222 ORTHO05D007677 4.7e-06 56.2 47 57.4
SEGI_30148 Sequoiadendron giganteum HOM05D006222 ORTHO05D007677 6.1e-06 55.8 51 51.0


User provided reference genes

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