Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL3G53380 Arabidopsis lyrata HOM05D005134 ORTHO05D006548 1.6e-188 662.5 328 100.0
AT2G20410 Arabidopsis thaliana HOM05D005134 ORTHO05D006548 9.4e-176 620.2 340 91.8
Carub.0003s3480 Capsella rubella HOM05D005134 ORTHO05D006548 5.1e-166 587.8 342 86.5
CARHR110960 Cardamine hirsuta HOM05D005134 ORTHO05D006548 3.5e-154 548.5 329 84.2
SpUn0001_1010 Schrenkiella parvula HOM05D005134 ORTHO05D006548 4.5e-138 495.0 339 76.4
Aa31LG2G12350 Aethionema arabicum HOM05D005134 ORTHO05D006548 1.8e-134 483.0 348 73.0
Thhalv10027851m.g Eutrema salsugineum HOM05D005134 ORTHO05D006548 3.0e-134 482.3 339 74.9
BcaC09g49624 Brassica carinata HOM05D005134 ORTHO05D006548 5.9e-130 468.0 328 73.2
C01p34370 Brassica napus HOM05D005134 ORTHO05D006548 1.1e-123 447.2 314 72.6
BolC1t03407H Brassica oleracea HOM05D005134 ORTHO05D006548 1.1e-123 447.2 314 72.6
BcaB04g20137 Brassica carinata HOM05D005134 ORTHO05D006548 4.4e-117 425.2 328 67.4
THA.LOC104807079 Tarenaya hassleriana HOM05D005134 ORTHO05D006548 7.5e-117 424.5 340 66.2
Cpa.g.sc162.33 Carica papaya HOM05D005134 ORTHO05D006548 1.3e-100 370.5 246 72.0
Dinv14615 Davidia involucrata HOM05D005134 ORTHO05D006548 5.4e-99 365.2 323 57.9
Manes.09G148800 Manihot esculenta HOM05D005134 ORTHO05D006548 2.1e-98 363.2 324 58.0
TWI63G1834 Tripterygium wilfordii HOM05D005134 ORTHO05D006548 2.1e-98 363.2 225 71.6
FvH4_6g02180 Fragaria vesca HOM05D005134 ORTHO05D006548 4.6e-98 362.1 268 65.7
RcHm_v2.0_Chr3g0449951 Rosa chinensis HOM05D005134 ORTHO05D006548 4.6e-98 362.1 325 56.9
TAR365G0228 Trochodendron aralioides HOM05D005134 ORTHO05D006548 1.0e-97 360.9 327 56.3
FAN14G0587 Fragaria x ananassa HOM05D005134 ORTHO05D006548 1.3e-97 360.5 268 65.3
QL03p031652 Quercus lobata HOM05D005134 ORTHO05D006548 1.3e-97 360.5 277 63.9
QL09p031144 Quercus lobata HOM05D005134 ORTHO05D006548 1.3e-97 360.5 277 63.9
PGR004G2085 Punica granatum HOM05D005134 ORTHO05D006548 3.0e-97 359.4 329 56.5
Ciclev10001967m.g Citrus clementina HOM05D005134 ORTHO05D006548 6.6e-97 358.2 326 54.6
Thecc.05G272900 Theobroma cacao HOM05D005134 ORTHO05D006548 6.6e-97 358.2 323 57.9
Nn1g02742 Nelumbo nucifera HOM05D005134 ORTHO05D006548 8.7e-97 357.8 329 58.4
Phvul.L001688 Phaseolus vulgaris HOM05D005134 ORTHO05D006548 8.7e-97 357.8 334 56.0
FAN05G3609 Fragaria x ananassa HOM05D005134 ORTHO05D006548 1.5e-96 357.1 274 63.5
MD12G1246100 Malus domestica HOM05D005134 ORTHO05D006548 1.9e-96 356.7 244 69.3
Gohir.A13G168200 Gossypium hirsutum HOM05D005134 ORTHO05D006548 3.3e-96 355.9 328 57.9
FAN05G5817 Fragaria x ananassa HOM05D005134 ORTHO05D006548 4.3e-96 355.5 243 69.1
Eucgr.H04250 Eucalyptus grandis HOM05D005134 ORTHO05D006548 1.3e-95 354.0 239 69.0
Prupe.6G348800 Prunus persica HOM05D005134 ORTHO05D006548 1.3e-95 354.0 222 73.9
Rhsim04G0183700 Rhododendron simsii HOM05D005134 ORTHO05D006548 1.6e-95 353.6 255 65.9
TAR636G3303 Trochodendron aralioides HOM05D005134 ORTHO05D006548 1.6e-95 353.6 294 60.2
VMungo0720G0573 Vigna mungo HOM05D005134 ORTHO05D006548 2.1e-95 353.2 334 53.9
Eucgr.H04279 Eucalyptus grandis HOM05D005134 ORTHO05D006548 8.1e-95 351.3 238 68.5
Lj5g0005697 Lotus japonicus HOM05D005134 ORTHO05D006548 8.1e-95 351.3 345 53.9
Duzib177G0085 Durio zibethinus HOM05D005134 ORTHO05D006548 1.1e-94 350.9 230 72.6
Gorai.013G187000 Gossypium raimondii HOM05D005134 ORTHO05D006548 1.1e-94 350.9 287 61.0
Sc09g0004160 Simmondsia chinensis HOM05D005134 ORTHO05D006548 1.1e-94 350.9 252 65.1
CiPaw.08G117800 Carya illinoinensis HOM05D005134 ORTHO05D006548 2.4e-94 349.7 328 57.0
Cc03_g05430 Coffea canephora HOM05D005134 ORTHO05D006548 2.4e-94 349.7 214 74.3
Gohir.D13G173500 Gossypium hirsutum HOM05D005134 ORTHO05D006548 2.4e-94 349.7 322 56.2
Potri.019G017900 Populus trichocarpa HOM05D005134 ORTHO05D006548 2.4e-94 349.7 327 57.2
Actinidia04451 Actinidia chinensis HOM05D005134 ORTHO05D006548 1.5e-93 347.1 247 68.4
CANSAT54G0719 Cannabis sativa HOM05D005134 ORTHO05D006548 2.0e-93 346.7 327 56.0
CAN.G793.56 Capsicum annuum HOM05D005134 ORTHO05D006548 5.8e-93 345.1 223 71.7
CsaV3_2G003750 Cucumis sativus L. HOM05D005134 ORTHO05D006548 5.8e-93 345.1 244 65.6
MBI18_g13184_MAGBIO Magnolia biondii HOM05D005134 ORTHO05D006548 7.6e-93 344.7 226 70.8
Hma1.2p1_1006F.1_g247010 Hydrangea macrophylla HOM05D005134 ORTHO05D006548 9.9e-93 344.4 240 69.2
Potri.013G045800 Populus trichocarpa HOM05D005134 ORTHO05D006548 9.9e-93 344.4 214 74.3
Sabra13G0042100 Salix brachista HOM05D005134 ORTHO05D006548 9.9e-93 344.4 240 69.6
CSS0005455 Camellia sinensis var. sinensis HOM05D005134 ORTHO05D006548 1.3e-92 344.0 287 57.8
Glyma.10G166800 Glycine max HOM05D005134 ORTHO05D006548 1.3e-92 344.0 304 56.2
Atru.chr6.1561 Acer truncatum HOM05D005134 ORTHO05D006548 4.9e-92 342.0 271 61.3
MELO3C004420.2 Cucumis melo HOM05D005134 ORTHO05D006548 4.9e-92 342.0 244 65.2
Nitab4.5_0000044g0220 Nicotiana tabacum HOM05D005134 ORTHO05D006548 4.9e-92 342.0 216 71.3
Nitab4.5_0011884g0010 Nicotiana tabacum HOM05D005134 ORTHO05D006548 6.4e-92 341.7 216 71.3
Aqoxy5G00231 Aquilegia oxysepala HOM05D005134 ORTHO05D006548 8.4e-92 341.3 245 66.5
Manes.08G138000 Manihot esculenta HOM05D005134 ORTHO05D006548 8.4e-92 341.3 323 55.1
Lj3A700T11 Lonicera japonica HOM05D005134 ORTHO05D006548 1.9e-91 340.1 238 67.6
Peaxi162Scf00409g00421 Petunia axillaris HOM05D005134 ORTHO05D006548 3.2e-91 339.3 216 72.2
Sed0016660 Sechium edule HOM05D005134 ORTHO05D006548 4.2e-91 339.0 236 68.6
Sopen09g032960 Solanum pennellii HOM05D005134 ORTHO05D006548 4.2e-91 339.0 215 72.1
GSVIVG01036192001 Vitis vinifera HOM05D005134 ORTHO05D006548 7.1e-91 338.2 273 61.5
MSTRG.21911 Avicennia marina HOM05D005134 ORTHO05D006548 9.3e-91 337.8 222 70.3
AUR62002121 Chenopodium quinoa HOM05D005134 ORTHO05D006548 9.3e-91 337.8 246 66.3
AUR62028240 Chenopodium quinoa HOM05D005134 ORTHO05D006548 9.3e-91 337.8 246 67.1
Sed0011924 Sechium edule HOM05D005134 ORTHO05D006548 1.6e-90 337.0 236 66.9
PGSC0003DMG400017174 Solanum tuberosum HOM05D005134 ORTHO05D006548 3.5e-90 335.9 215 72.6
TPR.G32267 Trifolium pratense HOM05D005134 ORTHO05D006548 3.5e-90 335.9 288 58.0
CDE02G0996 Ceratophyllum demersum HOM05D005134 ORTHO05D006548 4.6e-90 335.5 323 54.5
arahy.Tifrunner.gnm1.ann1.JQR6X4 Arachis hypogaea HOM05D005134 ORTHO05D006548 6.0e-90 335.1 253 63.2
Medtr1g079925 Medicago truncatula HOM05D005134 ORTHO05D006548 6.0e-90 335.1 300 57.3
arahy.Tifrunner.gnm1.ann1.MCCA8X Arachis hypogaea HOM05D005134 ORTHO05D006548 1.7e-89 333.6 291 57.4
EL10Ac3g05020 Beta vulgaris HOM05D005134 ORTHO05D006548 5.1e-89 332.0 239 64.9
Lalb_Chr02g0149171 Lupinus albus HOM05D005134 ORTHO05D006548 6.6e-89 331.6 361 50.4
PSO170G6910 Papaver somniferum HOM05D005134 ORTHO05D006548 1.1e-88 330.9 253 61.7
Glyma.20G222300 Glycine max HOM05D005134 ORTHO05D006548 1.5e-88 330.5 217 70.5
Oeu028977.1 Olea europaea HOM05D005134 ORTHO05D006548 2.5e-88 329.7 219 68.9
SalBow3G1367 Salvia bowleyana HOM05D005134 ORTHO05D006548 3.3e-88 329.3 212 71.2
unitig_0.g910 Utricularia gibba HOM05D005134 ORTHO05D006548 5.6e-88 328.6 216 71.3
Lsat_1_v5_gn_3_118860 Lactuca sativa HOM05D005134 ORTHO05D006548 9.6e-88 327.8 234 66.2
SHI23170 Sapria himalayana HOM05D005134 ORTHO05D006548 9.6e-88 327.8 326 52.5
HanXRQChr03g0091791 Helianthus annuus HOM05D005134 ORTHO05D006548 1.6e-87 327.0 248 62.1
Migut.N00267 Erythranthe guttata HOM05D005134 ORTHO05D006548 2.1e-87 326.6 222 70.3
COL.COLO4_15462 Corchorus olitorius HOM05D005134 ORTHO05D006548 4.8e-87 325.5 271 60.1
vmacro02444 Vaccinium macrocarpon HOM05D005134 ORTHO05D006548 4.8e-87 325.5 221 68.3
HPP92_015212 Vanilla planifolia HOM05D005134 ORTHO05D006548 4.8e-87 325.5 243 64.6
FAN02G2775 Fragaria x ananassa HOM05D005134 ORTHO05D006548 1.4e-86 323.9 341 50.4
Zm00001eb210280 Zea mays HOM05D005134 ORTHO05D006548 1.8e-86 323.6 215 70.7
ATR0730G220 Amborella trichopoda HOM05D005134 ORTHO05D006548 4.0e-86 322.4 216 69.4
Haze_04438 Corylus avellana HOM05D005134 ORTHO05D006548 5.3e-86 322.0 259 62.5
SEGI_05528 Sequoiadendron giganteum HOM05D005134 ORTHO05D006548 9.0e-86 321.2 215 67.4
Ah.04g155980 Amaranthus hybridus HOM05D005134 ORTHO05D006548 2.0e-85 320.1 214 69.6
ECA240G2747 Erigeron canadensis HOM05D005134 ORTHO05D006548 2.0e-85 320.1 216 68.5
ClCG02G016990 Citrullus lanatus HOM05D005134 ORTHO05D006548 3.4e-85 319.3 342 50.0
Solyc09g090050.4 Solanum lycopersicum HOM05D005134 ORTHO05D006548 4.5e-85 318.9 178 77.5
EL10Ac4g09067 Beta vulgaris HOM05D005134 ORTHO05D006548 5.8e-85 318.5 330 51.5
Hund03036 Selenicereus undatus HOM05D005134 ORTHO05D006548 5.8e-85 318.5 282 56.4
PSO173G0035 Papaver somniferum HOM05D005134 ORTHO05D006548 7.6e-85 318.2 228 63.6
Aqoxy2G03635 Aquilegia oxysepala HOM05D005134 ORTHO05D006548 9.9e-85 317.8 272 58.5
Hund06912 Selenicereus undatus HOM05D005134 ORTHO05D006548 1.7e-84 317.0 258 61.2
GSVIVG01027798001 Vitis vinifera HOM05D005134 ORTHO05D006548 1.7e-84 317.0 204 70.6
HPP92_025481 Vanilla planifolia HOM05D005134 ORTHO05D006548 8.4e-84 314.7 224 65.2
Actinidia34743 Actinidia chinensis HOM05D005134 ORTHO05D006548 4.6e-82 308.9 351 49.0
Eucgr.H04252 Eucalyptus grandis HOM05D005134 ORTHO05D006548 1.0e-76 291.2 269 56.5
vmacro08495 Vaccinium macrocarpon HOM05D005134 ORTHO05D006548 7.1e-75 285.0 397 41.1
Cfa006341 Carpinus fangiana HOM05D005617 ORTHO05D006548 2.5e-72 276.6 195 67.7
FAN09G4497 Fragaria x ananassa HOM05D005134 ORTHO05D006548 9.6e-72 274.6 244 59.0
Ah.06g191930 Amaranthus hybridus HOM05D005134 ORTHO05D006548 3.1e-70 269.6 331 46.8
Ca_10010_v3 Cicer arietinum L. HOM05D005134 ORTHO05D006548 4.1e-70 269.2 187 67.9
MD04G1229000 Malus domestica HOM05D005134 ORTHO05D006548 3.4e-69 266.2 280 52.5
AUR62004857 Chenopodium quinoa HOM05D005134 ORTHO05D006548 2.2e-68 263.5 286 49.7
Eucgr.H04289 Eucalyptus grandis HOM05D005134 ORTHO05D006548 2.1e-66 256.9 245 54.7
GSVIVG01027796001 Vitis vinifera HOM05D005134 ORTHO05D006548 2.1e-66 256.9 212 61.8
Mapoly0025s0138 Marchantia polymorpha HOM05D005134 ORTHO05D006548 3.0e-65 253.1 244 52.5
Rhsim13G0009400 Rhododendron simsii HOM05D005134 ORTHO05D006548 1.1e-64 251.1 211 58.8
SGA_v2.0_scaffold308G48086 Striga asiatica HOM05D005134 ORTHO05D006548 2.5e-59 233.4 126 76.2
Actinidia01853 Actinidia chinensis HOM05D005134 ORTHO05D006548 7.2e-59 231.9 256 49.2
AUR62040940 Chenopodium quinoa HOM05D005134 ORTHO05D006548 2.1e-58 230.3 223 51.6
Os03g0860000 Oryza sativa ssp. japonica HOM05D005134 ORTHO05D006548 3.9e-57 226.1 123 78.9
HPP92_015224 Vanilla planifolia HOM05D005134 ORTHO05D006548 8.8e-57 224.9 243 49.8
SMO367G0112 Selaginella moellendorffii HOM05D005134 ORTHO05D006548 9.7e-56 221.5 165 61.8
Eucgr.H04247 Eucalyptus grandis HOM05D005134 ORTHO05D006548 3.7e-55 219.5 123 78.0
DCAR_002321 Daucus carota HOM05D005134 ORTHO05D006548 6.9e-54 215.3 181 59.7
Actinidia38945 Actinidia chinensis HOM05D005134 ORTHO05D006548 2.5e-51 206.8 130 71.5
Dinv29871 Davidia involucrata HOM05D005134 ORTHO05D006548 2.6e-45 186.8 168 57.7
Psat6g143200 Pisum sativum HOM05D005134 ORTHO05D006548 3.2e-43 179.9 143 58.7
AagrBONN_evm.TU.Sc2ySwM_344.1164 Anthoceros agrestis HOM05D005134 ORTHO05D006548 2.3e-41 173.7 126 56.3
SEGI_11048 Sequoiadendron giganteum HOM05D005134 ORTHO05D006548 2.3e-41 173.7 151 56.3
Cre16.g655100 Chlamydomonas reinhardtii HOM05D005134 ORTHO05D006548 3.8e-36 156.4 221 39.4
vmacro02443 Vaccinium macrocarpon HOM05D005134 ORTHO05D006548 6.8e-33 145.6 99 66.7
Manes.15G040000 Manihot esculenta HOM05D005134 ORTHO05D006548 7.0e-30 135.6 84 71.4
Eucgr.H04286 Eucalyptus grandis HOM05D005134 ORTHO05D006548 2.0e-21 107.5 133 48.1
Duzib177G1154 Durio zibethinus HOM05D005134 ORTHO05D013855 7.0e-14 82.4 85 58.8
FAN14G5434 Fragaria x ananassa HOM05D005134 ORTHO05D006548 7.0e-14 82.4 127 41.7
RcHm_v2.0_Chr6g0274061 Rosa chinensis HOM05D005134 ORTHO05D006548 4.7e-10 69.7 66 53.0
FAN06G2241 Fragaria x ananassa HOM05D005134 ORTHO05D006548 2.0e-08 64.3 32 81.2


User provided reference genes

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