Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL3G53320 Arabidopsis lyrata HOM05D000834 ORTHO05D006956 1.5e-228 795.8 403 100.0
AT2G20360 Arabidopsis thaliana HOM05D000834 ORTHO05D006956 3.0e-224 781.6 403 98.0
Carub.0003s3474 Capsella rubella HOM05D000834 ORTHO05D006956 1.1e-221 773.1 403 96.8
CARHR110880 Cardamine hirsuta HOM05D000834 ORTHO05D006956 2.4e-221 771.9 403 96.5
Sp3g33600 Schrenkiella parvula HOM05D000834 ORTHO05D006956 4.6e-217 757.7 401 95.0
BcaB07g31592 Brassica carinata HOM05D000834 ORTHO05D006956 1.3e-216 756.1 401 95.0
BraA09t41279Z Brassica rapa HOM05D000834 ORTHO05D006956 2.3e-216 755.4 401 94.8
BcaC04g22796 Brassica carinata HOM05D000834 ORTHO05D006956 3.9e-216 754.6 401 94.3
BolC9t54430H Brassica oleracea HOM05D000834 ORTHO05D006956 3.9e-216 754.6 401 94.3
BraA07t27827Z Brassica rapa HOM05D000834 ORTHO05D006956 3.9e-216 754.6 401 94.3
BcaC07g41219 Brassica carinata HOM05D000834 ORTHO05D006956 1.5e-215 752.7 402 94.5
A07p00360 Brassica napus HOM05D000834 ORTHO05D000909 4.3e-215 751.1 400 94.0
BolC8t51785H Brassica oleracea HOM05D000834 ORTHO05D006956 5.6e-215 750.7 401 94.5
Thhalv10002002m.g Eutrema salsugineum HOM05D000834 ORTHO05D006956 5.6e-215 750.7 401 94.3
A09p12840 Brassica napus HOM05D000834 ORTHO05D006956 1.3e-214 749.6 398 94.2
BcaC06g36723 Brassica carinata HOM05D000834 ORTHO05D006956 2.1e-214 748.8 401 93.5
C08p42260 Brassica napus HOM05D000834 ORTHO05D006956 6.2e-214 747.3 399 94.5
C07p00720 Brassica napus HOM05D000834 ORTHO05D006956 8.1e-214 746.9 400 93.5
BolC7t40517H Brassica oleracea HOM05D000834 ORTHO05D006956 8.1e-214 746.9 400 93.5
A09p58940 Brassica napus HOM05D000834 ORTHO05D006956 6.9e-213 743.8 399 94.2
C09p15230 Brassica napus HOM05D000834 ORTHO05D006956 4.5e-212 741.1 395 93.9
BcaB08g34904 Brassica carinata HOM05D000834 ORTHO05D006956 2.5e-210 735.3 401 93.0
BraA09t36931Z Brassica rapa HOM05D000834 ORTHO05D006956 7.1e-210 733.8 391 94.4
Aa31LG8G17350 Aethionema arabicum HOM05D000834 ORTHO05D006956 3.0e-208 728.4 403 90.6
BcaB03g16828 Brassica carinata HOM05D000834 ORTHO05D006956 7.4e-199 697.2 401 88.8
THA.LOC104820067 Tarenaya hassleriana HOM05D000834 ORTHO05D006956 4.5e-196 688.0 403 84.4
THA.LOC104814534 Tarenaya hassleriana HOM05D000834 ORTHO05D006956 5.0e-195 684.5 403 82.6
CiPaw.03G271600 Carya illinoinensis HOM05D000834 ORTHO05D006956 2.0e-180 636.0 403 78.7
Haze_24714 Corylus avellana HOM05D000834 ORTHO05D006956 1.5e-178 629.8 403 77.2
Cfa002491 Carpinus fangiana HOM05D000834 ORTHO05D006956 2.5e-178 629.0 403 76.9
HanXRQChr01g0014941 Helianthus annuus HOM05D000834 ORTHO05D006956 1.2e-177 626.7 403 75.4
PGR044G1351 Punica granatum HOM05D000834 ORTHO05D006956 4.7e-177 624.8 403 77.2
MD10G1175400 Malus domestica HOM05D000834 ORTHO05D006956 8.0e-177 624.0 403 75.9
QL09p041638 Quercus lobata HOM05D000834 ORTHO05D006956 1.0e-176 623.6 403 76.4
Gorai.007G150200 Gossypium raimondii HOM05D000834 ORTHO05D006956 1.8e-176 622.9 404 76.5
TWI12G0869 Tripterygium wilfordii HOM05D000834 ORTHO05D006956 1.8e-176 622.9 403 75.2
Nn1g03003 Nelumbo nucifera HOM05D000834 ORTHO05D006956 4.0e-176 621.7 395 77.7
Sabra02G0194500 Salix brachista HOM05D000834 ORTHO05D006956 4.0e-176 621.7 403 75.4
Hund05490 Selenicereus undatus HOM05D000834 ORTHO05D006956 4.0e-176 621.7 403 76.4
TAR362G0351 Trochodendron aralioides HOM05D000834 ORTHO05D006956 4.0e-176 621.7 403 76.7
Potri.002G255900 Populus trichocarpa HOM05D000834 ORTHO05D006956 5.2e-176 621.3 403 75.7
Potri.014G193300 Populus trichocarpa HOM05D000834 ORTHO05D006956 5.2e-176 621.3 403 75.2
Prupe.8G214700 Prunus persica HOM05D000834 ORTHO05D006956 6.7e-176 620.9 403 76.4
arahy.Tifrunner.gnm1.ann1.WYWU3M Arachis hypogaea HOM05D000834 ORTHO05D006956 8.8e-176 620.5 403 74.9
Gohir.D11G140000 Gossypium hirsutum HOM05D000834 ORTHO05D006956 1.2e-175 620.2 404 76.2
GSVIVG01028438001 Vitis vinifera HOM05D000834 ORTHO05D006956 1.2e-175 620.2 403 75.2
ClCG06G001380 Citrullus lanatus HOM05D000834 ORTHO05D006956 1.5e-175 619.8 403 75.4
CsaV3_6G007320 Cucumis sativus L. HOM05D000834 ORTHO05D006956 1.5e-175 619.8 403 74.4
Sed0018887 Sechium edule HOM05D000834 ORTHO05D006956 2.0e-175 619.4 403 74.9
Duzib138G0050 Durio zibethinus HOM05D000834 ORTHO05D006956 2.6e-175 619.0 404 75.7
arahy.Tifrunner.gnm1.ann1.G250MW Arachis hypogaea HOM05D000834 ORTHO05D006956 3.3e-175 618.6 403 74.7
MD05G1187700 Malus domestica HOM05D000834 ORTHO05D006956 3.3e-175 618.6 403 75.4
Manes.12G038400 Manihot esculenta HOM05D000834 ORTHO05D006956 4.4e-175 618.2 403 77.4
Lsat_1_v5_gn_5_181100 Lactuca sativa HOM05D000834 ORTHO05D006956 1.3e-174 616.7 403 74.4
VMungo0720G2048 Vigna mungo HOM05D000834 ORTHO05D006956 1.3e-174 616.7 403 73.0
Cpa.g.sc87.39 Carica papaya HOM05D000834 ORTHO05D006956 1.7e-174 616.3 435 71.0
Gohir.A11G133900 Gossypium hirsutum HOM05D000834 ORTHO05D006956 2.2e-174 615.9 404 75.2
Sc05g0002850 Simmondsia chinensis HOM05D000834 ORTHO05D006956 2.8e-174 615.5 400 73.8
Glyma.13G127400 Glycine max HOM05D000834 ORTHO05D006956 3.7e-174 615.1 403 72.7
Lj1C74T17 Lonicera japonica HOM05D000834 ORTHO05D006956 3.7e-174 615.1 403 74.9
Phvul.007G153700 Phaseolus vulgaris HOM05D000834 ORTHO05D006956 4.8e-174 614.8 399 73.9
SGA_v2.0_scaffold1G00665 Striga asiatica HOM05D000121 ORTHO05D000102 8.2e-174 614.0 407 76.2
Thecc.01G249300 Theobroma cacao HOM05D000834 ORTHO05D006956 1.1e-173 613.6 404 74.8
TPR.G5902 Trifolium pratense HOM05D000834 ORTHO05D006956 1.1e-173 613.6 403 73.9
Actinidia09509 Actinidia chinensis HOM05D000834 ORTHO05D006956 1.4e-173 613.2 403 75.2
Medtr1g069455 Medicago truncatula HOM05D000834 ORTHO05D006956 3.1e-173 612.1 403 73.7
PSO832G2974 Papaver somniferum HOM05D000834 ORTHO05D006956 5.3e-173 611.3 403 73.9
FvH4_2g20370 Fragaria vesca HOM05D000834 ORTHO05D006956 9.1e-173 610.5 403 75.4
MSTRG.18357 Avicennia marina HOM05D000834 ORTHO05D006956 1.2e-172 610.1 397 75.8
Eucgr.K01422 Eucalyptus grandis HOM05D000834 ORTHO05D006956 1.2e-172 610.1 403 76.4
FAN24G3261 Fragaria x ananassa HOM05D000834 ORTHO05D006956 2.0e-172 609.4 404 75.5
Cc01_g17740 Coffea canephora HOM05D000834 ORTHO05D006956 2.7e-172 609.0 419 72.3
COL.COLO4_02902 Corchorus olitorius HOM05D000834 ORTHO05D006956 3.5e-172 608.6 404 75.7
Psat6g062480 Pisum sativum HOM05D000834 ORTHO05D006956 3.5e-172 608.6 403 73.4
DCAR_004694 Daucus carota HOM05D000834 ORTHO05D006956 7.7e-172 607.4 403 73.4
Manes.13G039100 Manihot esculenta HOM05D000834 ORTHO05D006956 7.7e-172 607.4 403 75.4
PSO764G0197 Papaver somniferum HOM05D000834 ORTHO05D006956 1.7e-171 606.3 403 73.4
Rhsim01G0259900 Rhododendron simsii HOM05D000834 ORTHO05D006956 2.2e-171 605.9 427 71.7
Migut.D00483 Erythranthe guttata HOM05D000834 ORTHO05D006956 5.0e-171 604.7 396 74.7
RcHm_v2.0_Chr6g0286481 Rosa chinensis HOM05D000834 ORTHO05D006956 6.5e-171 604.4 403 73.9
AUR62025434 Chenopodium quinoa HOM05D000834 ORTHO05D006956 8.5e-171 604.0 396 75.8
Lj5g0006902 Lotus japonicus HOM05D000834 ORTHO05D006956 8.5e-171 604.0 403 72.7
Oeu052085.1 Olea europaea HOM05D000834 ORTHO05D006956 1.5e-170 603.2 396 76.0
CSS0050145 Camellia sinensis var. sinensis HOM05D000834 ORTHO05D006956 1.9e-170 602.8 403 73.7
MELO3C022394.2 Cucumis melo HOM05D000834 ORTHO05D006956 3.2e-170 602.1 419 70.4
FAN15G3585 Fragaria x ananassa HOM05D000834 ORTHO05D006956 4.2e-170 601.7 396 75.5
CANSAT01G0496 Cannabis sativa HOM05D000834 ORTHO05D006956 7.2e-170 600.9 401 72.8
CANSAT01G1591 Cannabis sativa HOM05D000834 ORTHO05D006956 7.2e-170 600.9 401 72.8
CSS0037788 Camellia sinensis var. sinensis HOM05D000834 ORTHO05D006956 6.1e-169 597.8 408 72.8
MBI07_g22384_MAGBIO Magnolia biondii HOM05D000834 ORTHO05D006956 6.1e-169 597.8 361 79.5
ATR0787G052 Amborella trichopoda HOM05D000834 ORTHO05D006956 3.0e-168 595.5 398 74.6
Ciclev10020464m.g Citrus clementina HOM05D000834 ORTHO05D006956 3.0e-168 595.5 404 72.0
Atru.chr5.1869 Acer truncatum HOM05D000834 ORTHO05D006956 5.2e-168 594.7 404 72.8
Ah.08g213640 Amaranthus hybridus HOM05D000834 ORTHO05D006956 2.6e-167 592.4 360 80.6
Solyc09g064450.3 Solanum lycopersicum HOM05D000834 ORTHO05D006956 5.7e-167 591.3 404 72.5
Sopen09g025590 Solanum pennellii HOM05D000834 ORTHO05D006956 7.5e-167 590.9 404 72.3
HPP92_020769 Vanilla planifolia HOM05D000834 ORTHO05D006956 1.3e-166 590.1 396 73.7
CDE09G1390 Ceratophyllum demersum HOM05D000834 ORTHO05D006956 2.2e-166 589.3 390 75.1
Lalb_Chr02g0152761 Lupinus albus HOM05D000834 ORTHO05D006956 7.0e-165 584.3 404 71.8
Peaxi162Scf00043g00251 Petunia axillaris HOM05D000834 ORTHO05D006956 7.0e-165 584.3 405 71.6
Lalb_Chr06g0170741 Lupinus albus HOM05D000834 ORTHO05D006956 1.3e-163 580.1 404 71.3
Aqoxy5G00122 Aquilegia oxysepala HOM05D000834 ORTHO05D006956 2.2e-163 579.3 401 71.1
unitig_22.g6307 Utricularia gibba HOM05D000834 ORTHO05D006956 5.0e-163 578.2 395 73.4
Os02g0816800 Oryza sativa ssp. japonica HOM05D000834 ORTHO05D006956 1.1e-162 577.0 388 74.0
SalBow4G1359 Salvia bowleyana HOM05D000834 ORTHO05D006956 4.0e-160 568.5 494 61.9
Nitab4.5_0002435g0060 Nicotiana tabacum HOM05D000834 ORTHO05D006956 1.3e-158 563.5 445 65.2
Ca_09644_v3 Cicer arietinum L. HOM05D000834 ORTHO05D006956 2.4e-157 559.3 420 66.7
Nitab4.5_0000385g0020 Nicotiana tabacum HOM05D000834 ORTHO05D006956 4.1e-157 558.5 445 64.7
CSS0005533 Camellia sinensis var. sinensis HOM05D000834 ORTHO05D006956 1.1e-154 550.4 455 65.1
SEGI_11456 Sequoiadendron giganteum HOM05D000834 ORTHO05D006956 4.7e-153 545.0 397 66.2
vmacro14792 Vaccinium macrocarpon HOM05D000834 ORTHO05D006956 1.4e-152 543.5 556 54.3
FAN27G0744 Fragaria x ananassa HOM05D000834 ORTHO05D006956 4.6e-148 528.5 355 74.6
AUR62008805 Chenopodium quinoa HOM05D000834 ORTHO05D006956 3.4e-143 512.3 309 79.0
CDE02G1088 Ceratophyllum demersum HOM05D000834 ORTHO05D006956 2.1e-137 493.0 330 75.8
CAN.G536.3 Capsicum annuum HOM05D000834 ORTHO05D006956 4.1e-133 478.8 318 75.8
ECA248G1156 Erigeron canadensis HOM05D000121 ORTHO05D000102 1.0e-131 474.2 351 68.9
Dinv19263 Davidia involucrata HOM05D000834 ORTHO05D006956 6.6e-131 471.5 292 75.7
Mapoly0051s0097 Marchantia polymorpha HOM05D000834 ORTHO05D006956 2.1e-116 423.3 392 56.1
SalBow6G5988 Salvia bowleyana HOM05D000834 ORTHO05D006956 4.6e-116 422.2 345 65.5
AagrBONN_evm.TU.Sc2ySwM_368.182 Anthoceros agrestis HOM05D000834 ORTHO05D006956 1.5e-114 417.2 351 58.1
Pp3c14_9070 Physcomitrium patens HOM05D000834 ORTHO05D006956 1.5e-114 417.2 360 55.6
Zm00001eb258880 Zea mays HOM05D000834 ORTHO05D006956 6.9e-112 408.3 264 76.5
CBR_g12802 Chara braunii HOM05D000834 ORTHO05D006956 7.4e-106 388.3 339 54.6
SMO119G0351 Selaginella moellendorffii HOM05D000834 ORTHO05D006956 5.8e-95 352.1 358 48.9
Actinidia23703 Actinidia chinensis HOM05D000834 ORTHO05D006956 1.2e-87 327.8 242 72.3
MD15G1374200 Malus domestica HOM05D000834 ORTHO05D006956 7.2e-85 318.5 226 69.9
Pp3c1_35920 Physcomitrium patens HOM05D000834 ORTHO05D006956 9.7e-82 308.1 284 51.4
MCO13G055 Micromonas commoda HOM05D000834 ORTHO05D006956 7.9e-76 288.5 350 43.7
PRCOL_00005891 Prasinoderma coloniale HOM05D000834 ORTHO05D006956 1.3e-70 271.2 343 42.6
Cre10.g434450 Chlamydomonas reinhardtii HOM05D000834 ORTHO05D006956 2.9e-62 243.4 364 40.7
Dinv43064 Davidia involucrata HOM05D000834 ORTHO05D006956 2.6e-58 230.3 232 57.3
SEGI_20632 Sequoiadendron giganteum HOM05D000834 ORTHO05D006956 8.2e-57 225.3 171 70.2
Oeu015439.4 Olea europaea HOM05D000121 ORTHO05D000102 7.0e-56 222.2 267 50.2
SHI26743 Sapria himalayana HOM05D000834 ORTHO05D006956 3.5e-55 219.9 214 58.4
Gohir.A13G077301 Gossypium hirsutum HOM05D000834 ORTHO05D006956 6.1e-44 182.6 99 87.9
Gohir.A12G044900 Gossypium hirsutum HOM05D000751 ORTHO05D000889 2.4e-32 144.1 80 83.8
Gohir.A01G059200 Gossypium hirsutum HOM05D000751 ORTHO05D000889 4.1e-32 143.3 82 82.9
vmacro08769 Vaccinium macrocarpon HOM05D000834 ORTHO05D006956 5.2e-27 126.3 130 55.4
CDE02G0223 Ceratophyllum demersum HOM05D000834 ORTHO05D006956 2.2e-25 120.9 80 67.5
BcaB02g11316 Brassica carinata HOM05D000834 ORTHO05D000693 3.0e-22 110.5 64 87.5
SHI26740 Sapria himalayana HOM05D000834 ORTHO05D006956 1.2e-20 105.1 105 48.6
vmacro08768 Vaccinium macrocarpon HOM05D000834 ORTHO05D426596 3.1e-19 100.5 61 73.8
Lsat_1_v5_gn_8_148040 Lactuca sativa HOM05D000834 ORTHO05D006956 3.1e-11 73.9 70 55.7
Lsat_1_v5_gn_7_90061 Lactuca sativa HOM05D000834 ORTHO05D001119 7.8e-07 59.3 47 63.8
CiPaw.05G147100 Carya illinoinensis HOM05D000834 ORTHO05D006956 2.3e-06 57.8 42 71.4
Mapoly0040s0084 Marchantia polymorpha HOM05D005785 ORTHO05D007017 6.6e-06 56.2 167 27.5


User provided reference genes

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