Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL3G52940 Arabidopsis lyrata HOM05D007765 ORTHO05D009826 1.3e-88 329.7 175 100.0
AT2G18969 Arabidopsis thaliana HOM05D007765 ORTHO05D009826 2.7e-73 278.9 176 87.5
CARHR109510 Cardamine hirsuta HOM05D007765 ORTHO05D009826 1.3e-67 260.0 175 81.1
Sp3g32420 Schrenkiella parvula HOM05D007765 ORTHO05D009826 6.3e-62 241.1 175 77.7
Carub.0003s3320 Capsella rubella HOM05D007765 ORTHO05D009826 8.2e-62 240.7 173 78.6
A09p12150 Brassica napus HOM05D007765 ORTHO05D009826 1.0e-59 233.8 175 75.4
C09p14370 Brassica napus HOM05D007765 ORTHO05D009826 1.0e-59 233.8 175 75.4
BolC9t54340H Brassica oleracea HOM05D007765 ORTHO05D009826 1.0e-59 233.8 175 75.4
BraA09t36859Z Brassica rapa HOM05D007765 ORTHO05D009826 1.0e-59 233.8 175 75.4
Thhalv10022885m.g Eutrema salsugineum HOM05D007765 ORTHO05D009826 1.7e-59 233.0 175 75.4
BcaC04g22872 Brassica carinata HOM05D007765 ORTHO05D009826 8.5e-59 230.7 175 74.9
BcaB07g31628 Brassica carinata HOM05D007765 ORTHO05D009826 9.4e-58 227.3 175 73.1
Carub.0007s1043 Capsella rubella HOM05D007765 ORTHO05D009826 2.7e-49 199.1 175 66.3
AL7G22010 Arabidopsis lyrata HOM05D007765 ORTHO05D009826 3.6e-49 198.7 173 64.7
CARHR238080 Cardamine hirsuta HOM05D007765 ORTHO05D009826 1.8e-48 196.4 174 65.5
Thhalv10026906m.g Eutrema salsugineum HOM05D007765 ORTHO05D009826 2.6e-47 192.6 171 63.7
BcaNung04419 Brassica carinata HOM05D007765 ORTHO05D009826 4.4e-47 191.8 172 64.0
AT4G30180 Arabidopsis thaliana HOM05D007765 ORTHO05D009826 3.7e-46 188.7 173 64.7
THA.LOC104819971 Tarenaya hassleriana HOM05D007765 ORTHO05D009826 1.0e-43 180.6 170 64.1
Sp7g28050 Schrenkiella parvula HOM05D007765 ORTHO05D009826 1.9e-42 176.4 173 61.8
THA.LOC104803946 Tarenaya hassleriana HOM05D007765 ORTHO05D009826 3.3e-42 175.6 185 61.6
BcaB03g12635 Brassica carinata HOM05D007765 ORTHO05D009826 5.6e-42 174.9 175 61.7
A01p07960 Brassica napus HOM05D007765 ORTHO05D009826 1.6e-41 173.3 172 59.3
BcaC09g51800 Brassica carinata HOM05D007765 ORTHO05D009826 2.1e-41 172.9 172 60.5
C01p08880 Brassica napus HOM05D007765 ORTHO05D009826 2.1e-41 172.9 172 60.5
BolC1t00878H Brassica oleracea HOM05D007765 ORTHO05D009826 2.1e-41 172.9 172 60.5
BraA01t00741Z Brassica rapa HOM05D007765 ORTHO05D009826 2.8e-41 172.6 172 58.7
A08p19380 Brassica napus HOM05D007765 ORTHO05D009826 1.3e-38 163.7 173 57.8
BraA08t33899Z Brassica rapa HOM05D007765 ORTHO05D009826 1.3e-38 163.7 173 57.8
C03p88840 Brassica napus HOM05D007765 ORTHO05D009826 4.9e-38 161.8 173 57.2
BolC3t21196H Brassica oleracea HOM05D007765 ORTHO05D009826 4.9e-38 161.8 173 57.2
THA.LOC104803486 Tarenaya hassleriana HOM05D007765 ORTHO05D009826 1.5e-31 140.2 174 52.3
BcaB03g16695 Brassica carinata HOM05D007765 ORTHO05D009826 3.5e-28 129.0 109 68.8
Dinv41219 Davidia involucrata HOM05D007765 ORTHO05D009826 8.1e-25 117.9 197 39.1
BcaC06g36508 Brassica carinata HOM05D007765 ORTHO05D009826 5.2e-24 115.2 106 64.2
Ca_21240_v3 Cicer arietinum L. HOM05D007139 ORTHO05D009171 2.2e-22 109.8 157 43.9
QL11p005142 Quercus lobata HOM05D007765 ORTHO05D009826 2.9e-22 109.4 208 38.9
CiPaw.07G194200 Carya illinoinensis HOM05D007765 ORTHO05D009826 1.1e-21 107.5 223 37.7
TPR.G5381 Trifolium pratense HOM05D007765 ORTHO05D009826 9.2e-21 104.4 171 42.1
arahy.Tifrunner.gnm1.ann1.8SXC5S Arachis hypogaea HOM05D007765 ORTHO05D009826 1.2e-20 104.0 163 42.3
Lalb_Chr18g0052451 Lupinus albus HOM05D007765 ORTHO05D009826 2.7e-20 102.8 174 40.2
TAR383G0713 Trochodendron aralioides HOM05D007765 ORTHO05D009826 1.3e-19 100.5 213 36.2
BcaC04g20459 Brassica carinata HOM05D007765 ORTHO05D009826 1.7e-19 100.1 86 64.0
Phvul.003G143700 Phaseolus vulgaris HOM05D007765 ORTHO05D009826 2.3e-19 99.8 205 37.6
Lalb_Chr20g0116301 Lupinus albus HOM05D007765 ORTHO05D009826 6.6e-19 98.2 206 35.0
Aa31LG8G16060 Aethionema arabicum HOM05D007765 ORTHO05D009826 1.5e-18 97.1 173 42.8
Medtr4g127700 Medicago truncatula HOM05D007765 ORTHO05D009826 2.5e-18 96.3 161 40.4
Lalb_Chr12g0199471 Lupinus albus HOM05D007765 ORTHO05D009826 3.3e-18 95.9 181 38.1
Glyma.09G056600 Glycine max HOM05D007765 ORTHO05D009826 4.3e-18 95.5 199 36.2
Glyma.17G061700 Glycine max HOM05D007765 ORTHO05D009826 5.6e-18 95.1 203 36.0
TPR.G9240 Trifolium pratense HOM05D007765 ORTHO05D009826 9.5e-18 94.4 170 38.2
Lj4g0004123 Lotus japonicus HOM05D007765 ORTHO05D009826 1.2e-17 94.0 199 34.2
Glyma.15G162800 Glycine max HOM05D007765 ORTHO05D009826 2.8e-17 92.8 187 38.0
Lj6g0023329 Lotus japonicus HOM05D007765 ORTHO05D009826 3.6e-17 92.4 175 40.0
Gohir.D13G216400 Gossypium hirsutum HOM05D007765 ORTHO05D009826 6.2e-17 91.7 168 39.3
Gohir.A13G212300 Gossypium hirsutum HOM05D007765 ORTHO05D009826 8.1e-17 91.3 168 39.9
Gorai.013G246700 Gossypium raimondii HOM05D007765 ORTHO05D009826 1.1e-16 90.9 168 39.3
RcHm_v2.0_Chr4g0400891 Rosa chinensis HOM05D007765 ORTHO05D009826 1.1e-16 90.9 202 33.7
COL.COLO4_36375 Corchorus olitorius HOM05D007765 ORTHO05D009826 1.4e-16 90.5 198 37.9
Atru.chr7.847 Acer truncatum HOM05D007765 ORTHO05D009826 2.3e-16 89.7 202 35.6
Medtr2g036670 Medicago truncatula HOM05D007765 ORTHO05D009826 2.3e-16 89.7 170 35.3
Phvul.009G238800 Phaseolus vulgaris HOM05D007765 ORTHO05D009826 2.3e-16 89.7 194 37.1
Potri.018G090200 Populus trichocarpa HOM05D007765 ORTHO05D009826 2.3e-16 89.7 210 32.4
Sed0013776 Sechium edule HOM05D007765 ORTHO05D009826 2.3e-16 89.7 178 39.3
Duzib150G0923 Durio zibethinus HOM05D007765 ORTHO05D009826 3.1e-16 89.4 219 34.2
FvH4_4g07800 Fragaria vesca HOM05D007765 ORTHO05D009826 3.1e-16 89.4 205 34.6
FAN22G0698 Fragaria x ananassa HOM05D007765 ORTHO05D009826 4.0e-16 89.0 204 34.8
VMungo1309G2639 Vigna mungo HOM05D007765 ORTHO05D009826 4.0e-16 89.0 186 36.6
Glyma.13G098000 Glycine max HOM05D007765 ORTHO05D009826 8.9e-16 87.8 197 34.5
FAN07G1496 Fragaria x ananassa HOM05D007765 ORTHO05D009826 1.2e-15 87.4 204 33.8
Sabra18G0077700 Salix brachista HOM05D007765 ORTHO05D009826 1.5e-15 87.0 212 32.5
FAN17G2229 Fragaria x ananassa HOM05D007765 ORTHO05D009826 2.0e-15 86.7 205 33.7
MBI16_g38085_MAGBIO Magnolia biondii HOM05D007765 ORTHO05D009826 2.0e-15 86.7 191 31.4
FAN12G2617 Fragaria x ananassa HOM05D007765 ORTHO05D009826 3.4e-15 85.9 205 33.7
MBI14_g08141_MAGBIO Magnolia biondii HOM05D007765 ORTHO05D009826 4.4e-15 85.5 229 33.2
Prupe.1G081900 Prunus persica HOM05D007765 ORTHO05D009826 8.4e-14 81.3 197 33.5
CsaV3_2G008530 Cucumis sativus L. HOM05D007765 ORTHO05D009826 1.4e-13 80.5 189 31.7
ClCG11G011990 Citrullus lanatus HOM05D007765 ORTHO05D009826 7.1e-13 78.2 198 33.3
CANSAT11G2643 Cannabis sativa HOM05D007765 ORTHO05D009826 2.1e-12 76.6 227 33.9
Dinv19560 Davidia involucrata HOM05D007765 ORTHO05D009826 1.0e-11 74.3 194 35.1
PSO170G3972 Papaver somniferum HOM05D007765 ORTHO05D009826 1.3e-11 73.9 229 31.9
arahy.Tifrunner.gnm1.ann1.YM1G3Q Arachis hypogaea HOM05D007765 ORTHO05D009826 5.1e-11 72.0 180 33.9
Psat1g146600 Pisum sativum HOM05D007765 ORTHO05D009826 2.5e-10 69.7 101 39.6
PSO063G6075 Papaver somniferum HOM05D007765 ORTHO05D009826 7.3e-10 68.2 229 31.9
THA.LOC104804916 Tarenaya hassleriana HOM05D000002 ORTHO05D000001 2.1e-09 66.6 51 68.6
VMungo1215G1692 Vigna mungo HOM05D007765 ORTHO05D009826 5.2e-08 62.0 161 34.8
Medtr2g083470 Medicago truncatula HOM05D007765 ORTHO05D009826 3.4e-07 59.3 68 45.6


User provided reference genes

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