Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL3G52880 Arabidopsis lyrata HOM05D008462 ORTHO05D010511 2.5e-39 164.9 77 100.0
AL3G52890 Arabidopsis lyrata HOM05D008462 ORTHO05D010511 1.1e-29 132.9 70 87.1
AT2G19030 Arabidopsis thaliana HOM05D008462 ORTHO05D010511 1.1e-29 132.9 70 87.1
AT2G19045 Arabidopsis thaliana HOM05D008462 ORTHO05D010511 1.8e-29 132.1 70 87.1
AT2G19040 Arabidopsis thaliana HOM05D008462 ORTHO05D010511 1.0e-27 126.3 70 84.3
Carub.0003s3341 Capsella rubella HOM05D008462 ORTHO05D010511 6.7e-24 113.6 70 72.9
Carub.0003s3328 Capsella rubella HOM05D008462 ORTHO05D010511 8.7e-24 113.2 70 72.9
AT2G19020 Arabidopsis thaliana HOM05D008462 ORTHO05D010511 1.3e-22 109.4 71 74.6
Sp3g32450 Schrenkiella parvula HOM05D008462 ORTHO05D010511 2.5e-18 95.1 70 60.0
CARHR109540 Cardamine hirsuta HOM05D008462 ORTHO05D010511 9.3e-18 93.2 69 62.3
Thhalv10023138m.g Eutrema salsugineum HOM05D008462 ORTHO05D010511 1.8e-16 89.0 69 58.0
Thhalv10026849m.g Eutrema salsugineum HOM05D008462 ORTHO05D010511 1.8e-16 89.0 73 56.2
AT3G25170 Arabidopsis thaliana HOM05D008462 ORTHO05D010511 1.5e-15 85.9 73 56.2
BcaB03g16703 Brassica carinata HOM05D000065 ORTHO05D000162 2.5e-15 85.1 55 63.6
Thhalv10002753m.g Eutrema salsugineum HOM05D008462 ORTHO05D010511 7.4e-15 83.6 73 52.1
A07p07140 Brassica napus HOM05D008462 ORTHO05D010511 1.3e-14 82.8 73 57.5
BraA07t28500Z Brassica rapa HOM05D008462 ORTHO05D010511 1.3e-14 82.8 73 57.5
AL3G40860 Arabidopsis lyrata HOM05D008462 ORTHO05D010511 2.2e-14 82.0 73 53.4
CARHR105300 Cardamine hirsuta HOM05D008462 ORTHO05D010511 2.8e-14 81.6 53 66.0
Sp3g22770 Schrenkiella parvula HOM05D008462 ORTHO05D010511 6.3e-14 80.5 73 52.1
Aa31sc95G170 Aethionema arabicum HOM05D008462 ORTHO05D010511 1.4e-13 79.3 74 51.4
BcaC06g35797 Brassica carinata HOM05D008462 ORTHO05D010511 1.4e-13 79.3 73 54.8
C07p10750 Brassica napus HOM05D008462 ORTHO05D010511 1.4e-13 79.3 73 54.8
BolC7t41541H Brassica oleracea HOM05D008462 ORTHO05D010511 1.4e-13 79.3 73 54.8
CARHR101500 Cardamine hirsuta HOM05D008462 ORTHO05D010511 3.1e-13 78.2 71 52.1
BcaB07g31637 Brassica carinata HOM05D008462 ORTHO05D010511 1.2e-12 76.3 69 53.6
AL9U11140 Arabidopsis lyrata HOM05D008462 ORTHO05D010511 2.6e-12 75.1 75 49.3
BcaB04g21014 Brassica carinata HOM05D023045 ORTHO05D024329 2.6e-12 75.1 67 46.3
AT4G13075 Arabidopsis thaliana HOM05D008462 ORTHO05D010511 7.7e-12 73.6 72 50.0
Eucgr.L02596 Eucalyptus grandis HOM05D008462 ORTHO05D010511 3.8e-11 71.2 70 48.6
THA.LOC109116491 Tarenaya hassleriana HOM05D008462 ORTHO05D010511 3.8e-11 71.2 48 58.3
A01p40150 Brassica napus HOM05D023045 ORTHO05D024329 6.5e-11 70.5 80 43.8
BraA01t04055Z Brassica rapa HOM05D023045 ORTHO05D024329 6.5e-11 70.5 80 43.8
CARHR101510 Cardamine hirsuta HOM05D008462 ORTHO05D010511 1.9e-10 68.9 73 47.9
Carub.0003s2550 Capsella rubella HOM05D008462 ORTHO05D010511 4.2e-10 67.8 74 48.6
Eucgr.E01763 Eucalyptus grandis HOM05D008462 ORTHO05D010511 1.6e-09 65.9 70 42.9
Gohir.A03G013100 Gossypium hirsutum HOM05D009215 ORTHO05D010851 2.1e-09 65.5 74 47.3
CARHR101490 Cardamine hirsuta HOM05D008462 ORTHO05D010511 2.7e-09 65.1 72 47.2
Eucgr.L02598 Eucalyptus grandis HOM05D009215 ORTHO05D010511 3.6e-09 64.7 70 42.9
BcaC09g48311 Brassica carinata HOM05D023045 ORTHO05D024329 4.6e-09 64.3 77 40.3
BolC1t05106H Brassica oleracea HOM05D023045 ORTHO05D024329 4.6e-09 64.3 77 40.3
AL3G40850 Arabidopsis lyrata HOM05D008462 ORTHO05D010511 6.1e-09 63.9 74 48.6
BcaC06g30603 Brassica carinata HOM05D008462 ORTHO05D010511 6.7e-08 60.5 70 45.7
Sed0003068 Sechium edule HOM05D010794 ORTHO05D013590 6.7e-08 60.5 70 45.7
BcaNung02684 Brassica carinata HOM05D008462 ORTHO05D010511 8.8e-08 60.1 70 48.6
C07p50070 Brassica napus HOM05D008462 ORTHO05D010511 8.8e-08 60.1 70 48.6
BolC7t45511H Brassica oleracea HOM05D008462 ORTHO05D010511 8.8e-08 60.1 70 48.6
BraA03t14245Z Brassica rapa HOM05D008462 ORTHO05D010511 3.3e-07 58.2 70 47.1
Carub.0007s2967 Capsella rubella HOM05D008462 ORTHO05D010511 3.3e-07 58.2 47 53.2
Eucgr.L02597 Eucalyptus grandis HOM05D009215 ORTHO05D010511 3.3e-07 58.2 71 40.8
Nn1g08163 Nelumbo nucifera HOM05D057550 ORTHO05D010511 3.3e-07 58.2 71 45.1
AT3G25165 Arabidopsis thaliana HOM05D008462 ORTHO05D010511 4.4e-07 57.8 75 46.7
Eucgr.E01762 Eucalyptus grandis HOM05D009215 ORTHO05D010511 4.4e-07 57.8 70 37.1
BcaB06g28566 Brassica carinata HOM05D008462 ORTHO05D010511 7.4e-07 57.0 70 44.3
Sp3g22760 Schrenkiella parvula HOM05D008462 ORTHO05D010511 1.7e-06 55.8 52 50.0
COL.COLO4_16121 Corchorus olitorius HOM05D009215 ORTHO05D010851 2.2e-06 55.5 73 43.8
Duzib138G0384 Durio zibethinus HOM05D009215 ORTHO05D010851 2.2e-06 55.5 72 41.7
Gohir.D03G156400 Gossypium hirsutum HOM05D009215 ORTHO05D010851 2.2e-06 55.5 74 43.2
Gorai.003G164100 Gossypium raimondii HOM05D009215 ORTHO05D010851 2.8e-06 55.1 76 43.4
BcaC06g30601 Brassica carinata HOM05D008462 ORTHO05D010511 3.7e-06 54.7 70 44.3
Gorai.005G192700 Gossypium raimondii HOM05D009215 ORTHO05D010851 4.8e-06 54.3 74 40.5
CsaV3_UNG233300 Cucumis sativus L. HOM05D010794 ORTHO05D013590 6.3e-06 53.9 71 40.8
C05p42410 Brassica napus HOM05D046735 ORTHO05D010511 8.2e-06 53.5 74 45.9


User provided reference genes

Program Settings