Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL3G52490 Arabidopsis lyrata HOM05D008776 ORTHO05D005587 2.6e-264 914.8 460 100.0
AT2G16365 Arabidopsis thaliana HOM05D008776 ORTHO05D005587 6.2e-234 813.9 463 90.3
Carub.0003s3009 Capsella rubella HOM05D008776 ORTHO05D005587 6.2e-210 734.2 469 82.5
Sp3g29580 Schrenkiella parvula HOM05D008776 ORTHO05D005587 7.7e-192 674.1 481 75.9
Thhalv10022682m.g Eutrema salsugineum HOM05D008776 ORTHO05D005587 2.0e-179 632.9 474 75.1
BcaB03g16349 Brassica carinata HOM05D008776 ORTHO05D005587 6.3e-178 627.9 466 74.9
BcaC06g36144 Brassica carinata HOM05D008776 ORTHO05D005587 2.1e-165 586.3 463 73.4
BolC7t41148H Brassica oleracea HOM05D008776 ORTHO05D005587 2.1e-165 586.3 463 73.4
C07p07280 Brassica napus HOM05D008776 ORTHO05D005587 5.9e-160 568.2 463 71.7
A07p04560 Brassica napus HOM05D008776 ORTHO05D005587 9.5e-158 560.8 463 71.3
BraA07t28245Z Brassica rapa HOM05D008776 ORTHO05D005587 9.5e-158 560.8 463 71.3
BcaB08g34642 Brassica carinata HOM05D008776 ORTHO05D005587 6.1e-157 558.1 466 70.4
BcaC01g03031 Brassica carinata HOM05D008776 ORTHO05D005587 2.2e-154 549.7 471 69.2
C03p56950 Brassica napus HOM05D008776 ORTHO05D005587 2.2e-154 549.7 471 69.2
BolC3t17973H Brassica oleracea HOM05D008776 ORTHO05D005587 2.2e-154 549.7 471 69.2
BraA03t13706Z Brassica rapa HOM05D008776 ORTHO05D005587 1.2e-152 543.9 450 70.9
A03p45740 Brassica napus HOM05D008776 ORTHO05D005587 8.6e-151 537.7 452 70.6
Aa31LG8G13740 Aethionema arabicum HOM05D008776 ORTHO05D005587 8.6e-135 484.6 506 58.9
THA.LOC104807308 Tarenaya hassleriana HOM05D007001 ORTHO05D005587 9.6e-94 348.2 540 45.0
CARHR106560 Cardamine hirsuta HOM05D008776 ORTHO05D005587 1.5e-86 324.3 245 75.9
CARHR106580 Cardamine hirsuta HOM05D008776 ORTHO05D005587 1.9e-81 307.4 209 77.5
THA.LOC104804555 Tarenaya hassleriana HOM05D007001 ORTHO05D005587 1.8e-76 290.8 539 42.1
BcaC02g07919 Brassica carinata HOM05D008776 ORTHO05D005587 1.2e-46 191.8 143 71.3
A08p16740 Brassica napus HOM05D008776 ORTHO05D005587 5.0e-42 176.4 302 45.4
BraA08t33639Z Brassica rapa HOM05D008776 ORTHO05D005587 5.0e-42 176.4 302 45.4
Carub.0007s0575 Capsella rubella HOM05D008776 ORTHO05D005587 4.2e-41 173.3 317 42.0
AT4G34550 Arabidopsis thaliana HOM05D008776 ORTHO05D005587 6.1e-40 169.5 253 45.8
Manes.04G089500 Manihot esculenta HOM05D007001 ORTHO05D005587 2.3e-39 167.5 372 36.3
Duzib052G0704 Durio zibethinus HOM05D007001 ORTHO05D005587 5.2e-39 166.4 356 38.5
Cfa004981 Carpinus fangiana HOM05D007001 ORTHO05D005587 5.7e-38 162.9 393 35.1
Haze_02407 Corylus avellana HOM05D007001 ORTHO05D005587 1.3e-37 161.8 382 36.6
CiPaw.05G066600 Carya illinoinensis HOM05D007001 ORTHO05D005587 3.7e-37 160.2 372 36.0
Ciclev10027908m.g Citrus clementina HOM05D007001 ORTHO05D005587 4.1e-36 156.8 366 36.3
BcaC05g25214 Brassica carinata HOM05D008776 ORTHO05D005587 7.0e-36 156.0 176 58.0
TWI79G0124 Tripterygium wilfordii HOM05D007001 ORTHO05D005587 7.0e-36 156.0 349 38.1
Cpa.g.sc17.13 Carica papaya HOM05D007001 ORTHO05D005587 2.0e-35 154.5 379 35.6
Duzib132G0641 Durio zibethinus HOM05D007001 ORTHO05D005587 2.0e-35 154.5 355 36.9
Atru.chr5.3047 Acer truncatum HOM05D007001 ORTHO05D005587 1.0e-34 152.1 420 34.0
Manes.11G085600 Manihot esculenta HOM05D007001 ORTHO05D005587 1.7e-34 151.4 371 33.4
TWI31G1402 Tripterygium wilfordii HOM05D007001 ORTHO05D005587 6.6e-34 149.4 363 33.9
Gohir.D12G029100 Gossypium hirsutum HOM05D007001 ORTHO05D005587 1.1e-33 148.7 362 35.1
C04p04170 Brassica napus HOM05D008776 ORTHO05D005587 1.9e-33 147.9 149 62.4
BolC4t22056H Brassica oleracea HOM05D008776 ORTHO05D005587 1.9e-33 147.9 149 62.4
GSVIVG01023803001 Vitis vinifera HOM05D007001 ORTHO05D005587 1.9e-33 147.9 357 36.1
Thecc.02G082800 Theobroma cacao HOM05D007001 ORTHO05D005587 3.3e-33 147.1 356 36.2
Gorai.008G029800 Gossypium raimondii HOM05D007001 ORTHO05D005587 4.3e-33 146.7 362 34.8
C01p32810 Brassica napus HOM05D008776 ORTHO05D005587 5.6e-33 146.4 149 61.7
C05p54830 Brassica napus HOM05D008776 ORTHO05D005587 9.5e-33 145.6 149 61.7
BcaB03g11826 Brassica carinata HOM05D008776 ORTHO05D005587 2.8e-32 144.1 301 41.2
CSS0022058 Camellia sinensis var. sinensis HOM05D007001 ORTHO05D005587 3.6e-32 143.7 475 31.4
BolC5t29828H Brassica oleracea HOM05D008776 ORTHO05D005587 6.1e-32 142.9 149 61.1
BcaC05g29210 Brassica carinata HOM05D008776 ORTHO05D005587 1.0e-31 142.1 145 61.4
QL11p044451 Quercus lobata HOM05D007001 ORTHO05D005587 1.0e-31 142.1 454 31.1
TAR376G0762 Trochodendron aralioides HOM05D007001 ORTHO05D005587 2.3e-31 141.0 375 36.3
COL.COLO4_25959 Corchorus olitorius HOM05D007001 ORTHO05D005587 3.0e-31 140.6 364 33.8
RcHm_v2.0_Chr6g0265031 Rosa chinensis HOM05D007001 ORTHO05D005587 3.0e-31 140.6 374 35.3
Eucgr.G01689 Eucalyptus grandis HOM05D007001 ORTHO05D005587 4.0e-31 140.2 369 33.6
Sabra09G0090900 Salix brachista HOM05D007001 ORTHO05D005587 1.3e-29 135.2 355 36.3
Lalb_Chr03g0025591 Lupinus albus HOM05D007001 ORTHO05D005587 1.7e-29 134.8 403 32.5
FvH4_2g09190 Fragaria vesca HOM05D007001 ORTHO05D005587 2.9e-29 134.0 390 35.1
MD10G1072800 Malus domestica HOM05D007001 ORTHO05D005587 6.4e-29 132.9 361 38.0
Actinidia36006 Actinidia chinensis HOM05D007001 ORTHO05D005587 8.3e-29 132.5 363 34.2
Glyma.12G042500 Glycine max HOM05D007001 ORTHO05D005587 8.3e-29 132.5 339 33.9
MD05G1064100 Malus domestica HOM05D007001 ORTHO05D005587 8.3e-29 132.5 350 32.9
Actinidia00536 Actinidia chinensis HOM05D007001 ORTHO05D005587 1.4e-28 131.7 474 30.2
Rhsim11G0179000 Rhododendron simsii HOM05D007001 ORTHO05D005587 1.4e-28 131.7 383 33.7
Glyma.11G116700 Glycine max HOM05D007001 ORTHO05D005587 1.8e-28 131.3 351 33.9
CiPaw.06G134300 Carya illinoinensis HOM05D007001 ORTHO05D005587 7.0e-28 129.4 371 34.2
vmacro02090 Vaccinium macrocarpon HOM05D007001 ORTHO05D005587 9.2e-28 129.0 383 34.2
Potri.004G157000 Populus trichocarpa HOM05D007001 ORTHO05D005587 4.6e-27 126.7 387 33.1
FAN27G0151 Fragaria x ananassa HOM05D007001 ORTHO05D005587 1.0e-26 125.6 364 34.1
BcaC09g49800 Brassica carinata HOM05D008776 ORTHO05D005587 1.7e-26 124.8 145 57.9
Migut.N01249 Erythranthe guttata HOM05D007001 ORTHO05D005587 8.6e-26 122.5 501 29.7
FAN24G0234 Fragaria x ananassa HOM05D007001 ORTHO05D005587 1.5e-25 121.7 387 33.6
Phvul.011G044100 Phaseolus vulgaris HOM05D007001 ORTHO05D005587 1.9e-25 121.3 496 28.4
Sabra04G0104900 Salix brachista HOM05D007001 ORTHO05D005587 1.9e-25 121.3 492 28.0
Lalb_Chr19g0138701 Lupinus albus HOM05D007001 ORTHO05D005587 2.5e-25 120.9 347 32.6
Lj3g0024948 Lotus japonicus HOM05D007001 ORTHO05D005587 4.3e-25 120.2 420 31.0
Medtr4g070420 Medicago truncatula HOM05D007001 ORTHO05D005587 4.3e-25 120.2 381 32.0
Potri.009G118651 Populus trichocarpa HOM05D007001 ORTHO05D005587 7.3e-25 119.4 511 30.3
Prupe.8G094200 Prunus persica HOM05D007001 ORTHO05D005587 9.5e-25 119.0 344 35.2
PGR042G0047 Punica granatum HOM05D007001 ORTHO05D005587 1.6e-24 118.2 314 35.0
FAN15G3137 Fragaria x ananassa HOM05D007001 ORTHO05D005587 3.6e-24 117.1 365 33.4
HanXRQChr03g0074191 Helianthus annuus HOM05D007001 ORTHO05D005587 8.0e-24 115.9 319 30.7
Aqoxy5G01586 Aquilegia oxysepala HOM05D007001 ORTHO05D005587 1.8e-23 114.8 354 30.5
C09p31770 Brassica napus HOM05D008776 ORTHO05D042895 3.1e-23 114.0 132 53.0
BolC9t56034H Brassica oleracea HOM05D008776 ORTHO05D042895 3.1e-23 114.0 132 53.0
Nn5g29665 Nelumbo nucifera HOM05D007001 ORTHO05D005587 5.2e-23 113.2 532 27.6
VMungo1127G1486 Vigna mungo HOM05D007001 ORTHO05D005587 2.0e-22 111.3 355 31.3
EL10Ac9g21706 Beta vulgaris HOM05D007001 ORTHO05D005587 3.4e-22 110.5 362 32.9
Nitab4.5_0000308g0260 Nicotiana tabacum HOM05D007001 ORTHO05D005587 7.5e-22 109.4 459 28.8
MBI10_g06730_MAGBIO Magnolia biondii HOM05D007001 ORTHO05D005587 1.7e-21 108.2 390 31.8
DCAR_001566 Daucus carota HOM05D007001 ORTHO05D005587 2.9e-21 107.5 316 33.9
Ca_20889_v3 Cicer arietinum L. HOM05D007001 ORTHO05D005587 1.1e-20 105.5 427 28.1
Oeu029153.2 Olea europaea HOM05D007001 ORTHO05D005587 4.1e-20 103.6 319 34.2
Ah.01g019240 Amaranthus hybridus HOM05D007001 ORTHO05D005587 7.0e-20 102.8 346 30.1
arahy.Tifrunner.gnm1.ann1.M1RWF9 Arachis hypogaea HOM05D007001 ORTHO05D005587 9.2e-20 102.4 310 31.3
Cc02_g17350 Coffea canephora HOM05D007001 ORTHO05D005587 9.2e-20 102.4 348 30.7
AUR62016758 Chenopodium quinoa HOM05D007001 ORTHO05D005587 3.5e-19 100.5 355 30.1
Oeu055597.1 Olea europaea HOM05D007001 ORTHO05D005587 4.6e-19 100.1 315 30.5
AL7G16670 Arabidopsis lyrata HOM05D008776 ORTHO05D005587 6.0e-19 99.8 148 45.9
arahy.Tifrunner.gnm1.ann1.I3TCZM Arachis hypogaea HOM05D007001 ORTHO05D005587 1.0e-18 99.0 310 30.6
C03p85680 Brassica napus HOM05D008776 ORTHO05D005587 1.0e-18 99.0 178 46.1
BolC3t20854H Brassica oleracea HOM05D008776 ORTHO05D005587 1.0e-18 99.0 178 46.1
Psat7g184200 Pisum sativum HOM05D007001 ORTHO05D005587 1.0e-18 99.0 365 29.9
AUR62011300 Chenopodium quinoa HOM05D007001 ORTHO05D005587 2.3e-18 97.8 359 30.1
TPR.G22545 Trifolium pratense HOM05D007001 ORTHO05D005587 1.5e-17 95.1 348 30.5
Sed0007775 Sechium edule HOM05D007001 ORTHO05D005587 7.3e-17 92.8 288 30.9
BcaC01g00896 Brassica carinata HOM05D008776 ORTHO05D005587 9.5e-17 92.4 197 41.6
CARHR242860 Cardamine hirsuta HOM05D008776 ORTHO05D005587 1.2e-16 92.0 150 42.7
PGSC0003DMG400000714 Solanum tuberosum HOM05D007001 ORTHO05D005587 3.6e-16 90.5 356 29.8
MELO3C023308.2 Cucumis melo HOM05D007001 ORTHO05D005587 4.7e-16 90.1 443 27.1
Nitab4.5_0009972g0010 Nicotiana tabacum HOM05D007001 ORTHO05D005587 1.4e-15 88.6 389 28.5
Lalb_Chr01g0002461 Lupinus albus HOM05D007001 ORTHO05D005587 2.3e-15 87.8 224 33.9
PSO675G1875 Papaver somniferum HOM05D007001 ORTHO05D005587 2.3e-15 87.8 322 29.5
Solyc01g109780.3 Solanum lycopersicum HOM05D007001 ORTHO05D005587 2.3e-15 87.8 355 30.1
Peaxi162Scf00016g00623 Petunia axillaris HOM05D007001 ORTHO05D005587 3.1e-15 87.4 371 28.3
CsaV3_2G014890 Cucumis sativus L. HOM05D007001 ORTHO05D005587 5.2e-15 86.7 284 30.6
MBI16_g08804_MAGBIO Magnolia biondii HOM05D007001 ORTHO05D005587 5.2e-15 86.7 230 34.8
BolC1t03218H Brassica oleracea HOM05D008776 ORTHO05D005587 2.0e-14 84.7 89 59.6
ECA240G0129 Erigeron canadensis HOM05D007001 ORTHO05D005587 2.0e-14 84.7 335 30.4
Sopen01g051970 Solanum pennellii HOM05D007001 ORTHO05D005587 3.4e-14 84.0 355 29.0
ClCG11G004280 Citrullus lanatus HOM05D007001 ORTHO05D005587 5.8e-14 83.2 304 28.3
Nitab4.5_0008874g0010 Nicotiana tabacum HOM05D007001 ORTHO05D005587 5.8e-14 83.2 304 30.3
Hund06244 Selenicereus undatus HOM05D007001 ORTHO05D005587 5.8e-14 83.2 236 34.3
CDE06G0685 Ceratophyllum demersum HOM05D007001 ORTHO05D005587 2.9e-13 80.9 189 34.4
Migut.B00223 Erythranthe guttata HOM05D007001 ORTHO05D005587 2.9e-13 80.9 312 30.1
Sopen10g023370 Solanum pennellii HOM05D007001 ORTHO05D005587 9.2e-12 75.9 218 30.3
SGA_v2.0_scaffold125G33736 Striga asiatica HOM05D007001 ORTHO05D005587 2.1e-11 74.7 311 30.5
SalBow6G2324 Salvia bowleyana HOM05D007001 ORTHO05D005587 3.5e-11 73.9 286 29.0
PGSC0003DMG400007729 Solanum tuberosum HOM05D007001 ORTHO05D005587 6.0e-11 73.2 231 30.7
SalBow3G2815 Salvia bowleyana HOM05D007001 ORTHO05D005587 1.3e-10 72.0 320 30.9
Lsat_1_v5_gn_9_108461 Lactuca sativa HOM05D007001 ORTHO05D005587 1.7e-10 71.6 298 30.2
Nitab4.5_0007728g0020 Nicotiana tabacum HOM05D007001 ORTHO05D005587 2.3e-10 71.2 228 29.8
Aqoxy6G01158 Aquilegia oxysepala HOM05D007001 ORTHO05D005587 5.1e-10 70.1 298 28.5
BcaC01g00894 Brassica carinata HOM05D000394 ORTHO05D000299 6.6e-10 69.7 77 51.9
BcaC01g00895 Brassica carinata HOM05D008776 ORTHO05D005587 1.1e-09 68.9 66 56.1
Peaxi162Scf00003g01121 Petunia axillaris HOM05D007001 ORTHO05D005587 1.5e-09 68.6 262 28.6
CDE05G0774 Ceratophyllum demersum HOM05D007001 ORTHO05D005587 7.3e-09 66.2 243 27.6
PSO170G6310 Papaver somniferum HOM05D007001 ORTHO05D005587 2.1e-08 64.7 291 24.7
PSO764G0276 Papaver somniferum HOM05D007001 ORTHO05D005587 2.1e-08 64.7 291 25.1
CDE04G2987 Ceratophyllum demersum HOM05D007001 ORTHO05D005587 8.1e-08 62.8 187 33.2
Solyc10g052650.3 Solanum lycopersicum HOM05D007001 ORTHO05D005587 1.8e-07 61.6 71 45.1
Gohir.A12G029800 Gossypium hirsutum HOM05D007001 ORTHO05D005587 7.6e-06 56.2 94 44.7


User provided reference genes

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