Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL3G52350 Arabidopsis lyrata HOM05D004628 ORTHO05D005166 0.0e+00 1351.3 725 100.0
AT2G16270 Arabidopsis thaliana HOM05D004628 ORTHO05D005166 9.6e-290 1000.0 782 76.1
Carub.0003s2996 Capsella rubella HOM05D004628 ORTHO05D005166 3.8e-262 908.3 805 68.1
CARHR106490 Cardamine hirsuta HOM05D004628 ORTHO05D005166 1.1e-248 863.6 754 68.7
Sp3g29460 Schrenkiella parvula HOM05D004628 ORTHO05D005166 3.8e-230 802.0 874 58.6
Thhalv10022556m.g Eutrema salsugineum HOM05D004628 ORTHO05D005166 3.0e-219 765.8 855 59.6
C07p07410 Brassica napus HOM05D004628 ORTHO05D005166 1.1e-195 687.6 775 57.8
BolC7t41157H Brassica oleracea HOM05D004628 ORTHO05D005166 2.6e-194 682.9 772 57.6
BraA07t28247Z Brassica rapa HOM05D004628 ORTHO05D005166 7.8e-191 671.4 780 57.3
A07p04590 Brassica napus HOM05D004628 ORTHO05D005166 1.5e-189 667.2 774 57.6
BcaC06g36138 Brassica carinata HOM05D004628 ORTHO05D005166 8.1e-188 661.4 769 56.6
Aa31LG8G13660 Aethionema arabicum HOM05D004628 ORTHO05D005166 8.2e-124 448.7 824 44.9
Carub.0001s1637 Capsella rubella HOM05D004628 ORTHO05D005166 2.7e-114 417.2 881 42.7
Thhalv10006806m.g Eutrema salsugineum HOM05D004628 ORTHO05D005166 5.4e-107 392.9 860 41.3
Sp1g14770 Schrenkiella parvula HOM05D004628 ORTHO05D005166 1.0e-102 378.6 853 40.1
AT1G16630 Arabidopsis thaliana HOM05D004628 ORTHO05D005166 3.4e-101 373.6 875 40.9
AL1G28790 Arabidopsis lyrata HOM05D004628 ORTHO05D005166 3.2e-99 367.1 859 40.7
A06p12620 Brassica napus HOM05D004628 ORTHO05D005166 1.2e-98 365.2 878 38.2
C05p14910 Brassica napus HOM05D004628 ORTHO05D005166 8.6e-97 359.0 878 39.0
BraA06t24423Z Brassica rapa HOM05D004628 ORTHO05D005166 1.9e-96 357.8 869 38.0
BolC5t30206H Brassica oleracea HOM05D004628 ORTHO05D005166 1.4e-91 341.7 863 38.1
CARHR017100 Cardamine hirsuta HOM05D004628 ORTHO05D005166 3.5e-90 337.0 849 38.6
BcaC05g25526 Brassica carinata HOM05D004628 ORTHO05D005166 1.3e-84 318.5 916 36.0
THA.LOC104819526 Tarenaya hassleriana HOM05D004628 ORTHO05D005166 2.2e-84 317.8 891 36.3
Cpa.g.sc106.25 Carica papaya HOM05D004628 ORTHO05D005166 4.2e-59 233.8 794 33.6
Atru.chr5.2254 Acer truncatum HOM05D004628 ORTHO05D005166 7.1e-59 233.0 864 32.5
QL93p0138_0014 Quercus lobata HOM05D004628 ORTHO05D005166 2.4e-54 218.0 863 30.6
QL11p028919 Quercus lobata HOM05D004628 ORTHO05D005166 5.3e-54 216.9 864 30.9
Hma1.2p1_1051F.1_g252220 Hydrangea macrophylla HOM05D004628 ORTHO05D005166 4.5e-53 213.8 791 32.0
Sabra09G0065100 Salix brachista HOM05D004628 ORTHO05D005166 1.0e-52 212.6 859 31.2
Duzib132G0942 Durio zibethinus HOM05D004628 ORTHO05D005166 6.4e-52 209.9 900 31.3
Ciclev10027822m.g Citrus clementina HOM05D004628 ORTHO05D005166 8.4e-52 209.5 849 30.5
Thecc.02G121000 Theobroma cacao HOM05D004628 ORTHO05D005166 8.4e-52 209.5 894 31.3
Gohir.A03G180400 Gossypium hirsutum HOM05D004628 ORTHO05D005166 5.5e-51 206.8 859 31.2
TWI14G1143 Tripterygium wilfordii HOM05D004628 ORTHO05D005166 2.5e-48 198.0 868 30.1
Gorai.005G229300 Gossypium raimondii HOM05D004628 ORTHO05D005166 2.1e-47 194.9 857 30.0
Glyma.17G013400 Glycine max HOM05D004628 ORTHO05D005166 4.8e-47 193.7 846 29.8
Prupe.8G151700 Prunus persica HOM05D004628 ORTHO05D005166 2.4e-46 191.4 883 30.2
Potri.009G084400 Populus trichocarpa HOM05D004628 ORTHO05D005166 3.1e-46 191.0 883 28.1
Gohir.D02G203066 Gossypium hirsutum HOM05D004628 ORTHO05D005166 9.0e-46 189.5 882 29.9
Dinv16065 Davidia involucrata HOM05D004628 ORTHO05D005166 5.0e-44 183.7 849 30.4
MSTRG.16666 Avicennia marina HOM05D004628 ORTHO05D005166 1.0e-41 176.0 864 29.9
Gohir.A13G048100 Gossypium hirsutum HOM05D004628 ORTHO05D005166 1.3e-41 175.6 774 30.6
VMungo1215G2063 Vigna mungo HOM05D004628 ORTHO05D005166 5.1e-41 173.7 816 29.2
Cfa004712 Carpinus fangiana HOM05D004628 ORTHO05D005166 4.3e-40 170.6 897 29.1
TAR381G0961 Trochodendron aralioides HOM05D004628 ORTHO05D005166 2.8e-39 167.9 858 30.2
Nn6g32057 Nelumbo nucifera HOM05D004628 ORTHO05D005166 3.7e-39 167.5 864 29.1
PGSC0003DMG400001291 Solanum tuberosum HOM05D004628 ORTHO05D005166 6.3e-39 166.8 822 29.0
Manes.10G088200 Manihot esculenta HOM05D004628 ORTHO05D005166 1.1e-38 166.0 848 30.0
Oeu037295.1 Olea europaea HOM05D004628 ORTHO05D005166 1.1e-38 166.0 850 28.7
Cc02_g20190 Coffea canephora HOM05D004628 ORTHO05D005166 1.4e-38 165.6 844 29.6
COL.COLO4_32472 Corchorus olitorius HOM05D004628 ORTHO05D005166 1.8e-38 165.2 849 29.8
Gorai.013G052200 Gossypium raimondii HOM05D004628 ORTHO05D005166 2.4e-38 164.9 770 29.5
Gohir.D13G046500 Gossypium hirsutum HOM05D004628 ORTHO05D005166 5.3e-38 163.7 767 29.6
CSS0024832 Camellia sinensis var. sinensis HOM05D004628 ORTHO05D005166 6.9e-38 163.3 866 29.3
Lj5A222T77 Lonicera japonica HOM05D004628 ORTHO05D005166 1.2e-37 162.5 842 28.4
Glyma.07G260600 Glycine max HOM05D004628 ORTHO05D005166 2.6e-37 161.4 855 29.1
FAN24G0611 Fragaria x ananassa HOM05D004628 ORTHO05D005166 4.5e-37 160.6 855 29.6
Phvul.003G078900 Phaseolus vulgaris HOM05D004628 ORTHO05D005166 5.9e-37 160.2 870 28.6
Solyc01g106750.2 Solanum lycopersicum HOM05D004628 ORTHO05D005166 5.9e-37 160.2 816 30.1
CiPaw.06G163200 Carya illinoinensis HOM05D004628 ORTHO05D005166 1.3e-36 159.1 948 27.2
FvH4_2g03070 Fragaria vesca HOM05D004628 ORTHO05D005166 1.7e-36 158.7 855 29.6
Sopen01g049070 Solanum pennellii HOM05D004628 ORTHO05D005166 8.5e-36 156.4 812 29.8
Lalb_Chr18g0056371 Lupinus albus HOM05D004628 ORTHO05D005166 1.9e-35 155.2 881 27.9
TPR.G37037 Trifolium pratense HOM05D004628 ORTHO05D005166 1.2e-34 152.5 812 28.6
Sabra16G0180900 Salix brachista HOM05D004628 ORTHO05D005166 2.1e-34 151.8 926 26.9
FAN27G1701 Fragaria x ananassa HOM05D004628 ORTHO05D005166 7.9e-34 149.8 851 29.5
FAN15G3289 Fragaria x ananassa HOM05D004628 ORTHO05D005166 1.4e-33 149.1 837 29.3
Manes.07G052400 Manihot esculenta HOM05D004628 ORTHO05D005166 1.4e-33 149.1 852 28.4
Medtr4g132160 Medicago truncatula HOM05D004628 ORTHO05D005166 1.4e-33 149.1 865 26.9
Potri.001G289100 Populus trichocarpa HOM05D004628 ORTHO05D005166 5.1e-33 147.1 766 29.6
FAN20G2820 Fragaria x ananassa HOM05D004628 ORTHO05D005166 8.8e-33 146.4 861 29.3
vmacro22260 Vaccinium macrocarpon HOM05D004628 ORTHO05D005166 3.3e-32 144.4 843 29.9
Rhsim05G0093300 Rhododendron simsii HOM05D004628 ORTHO05D005166 5.7e-32 143.7 853 27.7
Dinv09529 Davidia involucrata HOM05D004628 ORTHO05D005166 9.7e-32 142.9 883 27.6
RcHm_v2.0_Chr6g0247921 Rosa chinensis HOM05D004628 ORTHO05D005166 9.7e-32 142.9 829 28.3
Lj4g0013789 Lotus japonicus HOM05D004628 ORTHO05D005166 1.7e-31 142.1 543 31.1
SGA_v2.0_scaffold32G12978 Striga asiatica HOM05D004628 ORTHO05D005166 3.7e-31 141.0 839 26.8
HanXRQChr04g0101671 Helianthus annuus HOM05D004628 ORTHO05D005166 4.8e-31 140.6 771 28.3
SalBow6G1764 Salvia bowleyana HOM05D004628 ORTHO05D005166 5.3e-30 137.1 778 27.1
SalBow6G5308 Salvia bowleyana HOM05D004628 ORTHO05D005166 5.3e-30 137.1 778 27.1
Peaxi162Scf00016g03244 Petunia axillaris HOM05D004628 ORTHO05D005166 9.1e-30 136.3 893 27.8
arahy.Tifrunner.gnm1.ann1.V3P7C9 Arachis hypogaea HOM05D000513 ORTHO05D005786 1.2e-29 136.0 847 27.6
CsaV3_4G000030 Cucumis sativus L. HOM05D004628 ORTHO05D005166 4.5e-29 134.0 936 26.5
SGA_v2.0_scaffold519G52683 Striga asiatica HOM05D004628 ORTHO05D005166 2.2e-28 131.7 869 27.2
Haze_10333 Corylus avellana HOM05D004628 ORTHO05D005166 1.2e-26 125.9 863 27.6
arahy.Tifrunner.gnm1.ann1.EFUN8Y Arachis hypogaea HOM05D004628 ORTHO05D005166 6.1e-26 123.6 851 27.0
unitig_60.g25465 Utricularia gibba HOM05D004628 ORTHO05D005166 1.8e-25 122.1 812 27.6
PSO447G0365 Papaver somniferum HOM05D004628 ORTHO05D005166 3.0e-25 121.3 880 26.4
Nitab4.5_0010657g0040 Nicotiana tabacum HOM05D004628 ORTHO05D005166 5.1e-25 120.6 856 26.5
Nitab4.5_0000772g0030 Nicotiana tabacum HOM05D004628 ORTHO05D005166 6.7e-25 120.2 858 26.7
ECA234G3304 Erigeron canadensis HOM05D004628 ORTHO05D005166 4.4e-24 117.5 760 27.0
Lsat_1_v5_gn_5_111860 Lactuca sativa HOM05D004628 ORTHO05D005166 4.4e-24 117.5 761 26.7
AUR62027031 Chenopodium quinoa HOM05D004628 ORTHO05D005166 9.7e-24 116.3 853 26.7
TAR628G0237 Trochodendron aralioides HOM05D004628 ORTHO05D005166 1.3e-23 115.9 896 27.1
PSO210G3573 Papaver somniferum HOM05D004628 ORTHO05D005166 1.7e-23 115.5 869 26.4
Eucgr.B01419 Eucalyptus grandis HOM05D004628 ORTHO05D005166 4.8e-23 114.0 830 27.3
Sed0020853 Sechium edule HOM05D004628 ORTHO05D005166 4.8e-23 114.0 899 25.0
Prupe.8G151500 Prunus persica HOM05D004628 ORTHO05D005166 8.2e-23 113.2 265 37.4
Migut.B00478 Erythranthe guttata HOM05D004628 ORTHO05D005166 2.4e-22 111.7 887 27.3
DCAR_021936 Daucus carota HOM05D004628 ORTHO05D005166 2.6e-21 108.2 348 31.6
Ca_21082_v3 Cicer arietinum L. HOM05D004628 ORTHO05D005166 3.5e-21 107.8 911 27.3
Actinidia28002 Actinidia chinensis HOM05D004628 ORTHO05D006160 5.9e-21 107.1 796 27.9
Aqoxy6G01519 Aquilegia oxysepala HOM05D004628 ORTHO05D005166 3.8e-20 104.4 856 27.0
MELO3C018028.2 Cucumis melo HOM05D004628 ORTHO05D005166 3.8e-20 104.4 895 25.7
ClCG10G009980 Citrullus lanatus HOM05D004628 ORTHO05D005166 6.5e-20 103.6 925 25.3
Sc08g0004290 Simmondsia chinensis HOM05D004628 ORTHO05D005166 8.5e-20 103.2 557 27.5
MBI16_g18399_MAGBIO Magnolia biondii HOM05D004628 ORTHO05D005166 1.9e-19 102.1 484 28.5
AUR62030875 Chenopodium quinoa HOM05D004628 ORTHO05D005166 2.5e-19 101.7 850 24.9
Hund00415 Selenicereus undatus HOM05D004628 ORTHO05D005166 7.2e-19 100.1 945 25.7
Ah.01g024550 Amaranthus hybridus HOM05D004628 ORTHO05D005166 9.4e-19 99.8 834 25.5
Psat4g006640 Pisum sativum HOM05D004628 ORTHO05D005166 1.6e-18 99.0 951 24.3
arahy.Tifrunner.gnm1.ann1.L5X8FN Arachis hypogaea HOM05D004628 ORTHO05D005166 3.6e-18 97.8 905 25.9
arahy.Tifrunner.gnm1.ann1.R9786Y Arachis hypogaea HOM05D004628 ORTHO05D005166 3.6e-18 97.8 927 25.8
Ah.01g007160 Amaranthus hybridus HOM05D004628 ORTHO05D005166 5.7e-16 90.5 768 25.5
Lalb_Chr15g0087631 Lupinus albus HOM05D004628 ORTHO05D005166 2.2e-15 88.6 982 26.4
Lsat_1_v5_gn_5_129280 Lactuca sativa HOM05D004628 ORTHO05D005166 4.8e-15 87.4 219 35.6
unitig_744.g24202 Utricularia gibba HOM05D004628 ORTHO05D005166 8.2e-15 86.7 688 25.9
PGR142G3374 Punica granatum HOM05D004628 ORTHO05D005166 4.1e-14 84.3 878 25.3
Psat6g212600 Pisum sativum HOM05D004628 ORTHO05D005166 7.0e-14 83.6 248 29.4
BcaNung07335 Brassica carinata HOM05D004628 ORTHO05D005166 5.9e-13 80.5 92 53.3
GSVIVG01037037001 Vitis vinifera HOM05D004628 ORTHO05D005166 1.7e-12 79.0 147 45.6
Duzib132G1149 Durio zibethinus HOM05D004628 ORTHO05D005166 1.2e-10 72.8 352 29.0
GSVIVG01037038001 Vitis vinifera HOM05D004628 ORTHO05D005166 4.7e-10 70.9 52 73.1
HPP92_001855 Vanilla planifolia HOM05D004628 ORTHO05D005166 5.2e-09 67.4 821 25.6
EL10Ac4g09112 Beta vulgaris HOM05D004628 ORTHO05D005166 1.5e-08 65.9 911 24.3
arahy.Tifrunner.gnm1.ann1.53VTV0 Arachis hypogaea HOM05D004628 ORTHO05D005166 2.6e-08 65.1 265 29.8
Psat0ss6263g0240 Pisum sativum HOM05D004165 ORTHO05D005166 5.7e-08 63.9 83 42.2
Atru.chr1.1899 Acer truncatum HOM05D004628 ORTHO05D005166 7.5e-08 63.5 167 37.7
Psat5g077040 Pisum sativum HOM05D004628 ORTHO05D005166 3.7e-07 61.2 101 37.6
Nitab4.5_0008331g0010 Nicotiana tabacum HOM05D004628 ORTHO05D005166 1.1e-06 59.7 51 62.7
Cc04_g02470 Coffea canephora HOM05D008208 ORTHO05D010143 1.8e-06 58.9 244 27.9
SEGI_16491 Sequoiadendron giganteum HOM05D004628 ORTHO05D005166 5.4e-06 57.4 316 30.7


User provided reference genes

Program Settings