Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL3G51990 Arabidopsis lyrata HOM05D003405 ORTHO05D003920 9.4e-36 154.1 162 100.0
BcaNung00602 Brassica carinata HOM05D003405 ORTHO05D003920 2.2e-24 116.3 65 81.5
BcaNung00601 Brassica carinata HOM05D003405 ORTHO05D003920 5.3e-23 111.7 61 82.0
C01p03540 Brassica napus HOM05D003405 ORTHO05D003920 7.0e-23 111.3 61 82.0
BolC1t00343H Brassica oleracea HOM05D003405 ORTHO05D003920 7.0e-23 111.3 61 82.0
Sp7g33160 Schrenkiella parvula HOM05D003405 ORTHO05D003920 3.2e-20 102.4 61 77.0
AL7G35270 Arabidopsis lyrata HOM05D003405 ORTHO05D003920 1.5e-17 93.6 67 68.7
Carub.0007s2229 Capsella rubella HOM05D003405 ORTHO05D003920 1.5e-17 93.6 67 68.7
Thhalv10024971m.g Eutrema salsugineum HOM05D003405 ORTHO05D003920 1.5e-17 93.6 67 68.7
THA.LOC104821304 Tarenaya hassleriana HOM05D003405 ORTHO05D003920 1.5e-17 93.6 67 65.7
BcaB04g18507 Brassica carinata HOM05D003405 ORTHO05D003920 2.0e-17 93.2 67 68.7
Sp7g17610 Schrenkiella parvula HOM05D003405 ORTHO05D003920 2.0e-17 93.2 67 68.7
Aa31LG6G1580 Aethionema arabicum HOM05D003405 ORTHO05D003920 5.7e-17 91.7 66 66.7
BcaC01g00579 Brassica carinata HOM05D003405 ORTHO05D003920 5.7e-17 91.7 67 67.2
C03p81570 Brassica napus HOM05D003405 ORTHO05D003920 5.7e-17 91.7 67 67.2
BolC3t20427H Brassica oleracea HOM05D003405 ORTHO05D003920 5.7e-17 91.7 67 67.2
Phvul.008G287000 Phaseolus vulgaris HOM05D003405 ORTHO05D003920 1.7e-16 90.1 67 65.7
BcaC09g51456 Brassica carinata HOM05D003405 ORTHO05D003920 2.8e-16 89.4 67 64.2
C01p12940 Brassica napus HOM05D003405 ORTHO05D003920 2.8e-16 89.4 67 64.2
BolC1t01269H Brassica oleracea HOM05D003405 ORTHO05D003920 2.8e-16 89.4 67 64.2
A01p10930 Brassica napus HOM05D003405 ORTHO05D003920 3.7e-16 89.0 67 64.2
BraA01t01039Z Brassica rapa HOM05D003405 ORTHO05D003920 3.7e-16 89.0 67 64.2
CiPaw.08G138300 Carya illinoinensis HOM05D003405 ORTHO05D003920 3.7e-16 89.0 67 64.2
PGR083G0802 Punica granatum HOM05D003405 ORTHO05D003920 3.7e-16 89.0 70 60.0
MD12G1093200 Malus domestica HOM05D003405 ORTHO05D003920 4.8e-16 88.6 67 62.7
MD14G1085200 Malus domestica HOM05D003405 ORTHO05D003920 4.8e-16 88.6 67 62.7
BraA08t33397Z Brassica rapa HOM05D003405 ORTHO05D003920 8.3e-16 87.8 63 66.7
AT4G18905 Arabidopsis thaliana HOM05D003405 ORTHO05D003920 1.1e-15 87.4 66 63.6
CSS0045191 Camellia sinensis var. sinensis HOM05D003405 ORTHO05D003920 1.1e-15 87.4 70 58.6
Cfa013259 Carpinus fangiana HOM05D003405 ORTHO05D006100 1.4e-15 87.0 67 61.2
Haze_21718 Corylus avellana HOM05D003405 ORTHO05D003920 1.4e-15 87.0 67 61.2
FAN23G2718 Fragaria x ananassa HOM05D003405 ORTHO05D003920 1.4e-15 87.0 67 62.7
Glyma.02G307200 Glycine max HOM05D003405 ORTHO05D003920 1.4e-15 87.0 67 64.2
EL10As7g23803 Beta vulgaris HOM05D003405 ORTHO05D003920 1.8e-15 86.7 70 57.1
CSS0031696 Camellia sinensis var. sinensis HOM05D003405 ORTHO05D003920 1.8e-15 86.7 67 61.2
AUR62033117 Chenopodium quinoa HOM05D003405 ORTHO05D003920 1.8e-15 86.7 70 57.1
BcaB04g18506 Brassica carinata HOM05D003405 ORTHO05D003920 2.4e-15 86.3 63 65.1
FAN28G1735 Fragaria x ananassa HOM05D003405 ORTHO05D003920 2.4e-15 86.3 67 61.2
Rhsim13G0025400 Rhododendron simsii HOM05D003405 ORTHO05D003920 2.4e-15 86.3 67 61.2
RcHm_v2.0_Chr2g0100561 Rosa chinensis HOM05D003405 ORTHO05D003920 2.4e-15 86.3 67 61.2
CANSAT11G1046 Cannabis sativa HOM05D003405 ORTHO05D003920 3.1e-15 85.9 70 58.6
Dinv32930 Davidia involucrata HOM05D003405 ORTHO05D003920 3.1e-15 85.9 70 58.6
Actinidia00757 Actinidia chinensis HOM05D003405 ORTHO05D003920 4.1e-15 85.5 67 61.2
COL.COLO4_35734 Corchorus olitorius HOM05D003405 ORTHO05D003920 4.1e-15 85.5 70 57.1
Duzib264G0139 Durio zibethinus HOM05D003405 ORTHO05D003920 4.1e-15 85.5 70 58.6
Ah.05g167170 Amaranthus hybridus HOM05D003405 ORTHO05D003920 5.4e-15 85.1 70 54.3
BraA01t00304Z Brassica rapa HOM05D003405 ORTHO05D003920 5.4e-15 85.1 61 67.2
FAN04G1939 Fragaria x ananassa HOM05D003405 ORTHO05D003920 5.4e-15 85.1 67 59.7
FvH4_1g12600 Fragaria vesca HOM05D003405 ORTHO05D003920 7.0e-15 84.7 67 61.2
Hund18693 Selenicereus undatus HOM05D003405 ORTHO05D003920 7.0e-15 84.7 67 58.2
AUR62039160 Chenopodium quinoa HOM05D003405 ORTHO05D003920 9.1e-15 84.3 70 55.7
Migut.H00806 Erythranthe guttata HOM05D003405 ORTHO05D003920 9.1e-15 84.3 70 57.1
FvH4_5g33300 Fragaria vesca HOM05D003405 ORTHO05D003920 9.1e-15 84.3 67 59.7
FAN08G1135 Fragaria x ananassa HOM05D003405 ORTHO05D003920 9.1e-15 84.3 67 59.7
FAN18G4171 Fragaria x ananassa HOM05D003405 ORTHO05D003920 9.1e-15 84.3 67 59.7
Oeu047246.2 Olea europaea HOM05D003405 ORTHO05D003920 9.1e-15 84.3 66 60.6
arahy.Tifrunner.gnm1.ann1.A1R0CF Arachis hypogaea HOM05D003405 ORTHO05D003920 1.2e-14 84.0 67 59.7
Eucgr.H02854 Eucalyptus grandis HOM05D003405 ORTHO05D003920 1.2e-14 84.0 70 57.1
LjContig00081g0028006 Lotus japonicus HOM05D003405 ORTHO05D003920 1.2e-14 84.0 70 58.6
Sabra07G0016700 Salix brachista HOM05D003405 ORTHO05D003920 1.2e-14 84.0 70 58.6
Actinidia09137 Actinidia chinensis HOM05D003405 ORTHO05D003920 1.6e-14 83.6 66 60.6
Glyma.14G005900 Glycine max HOM05D003405 ORTHO05D003920 1.6e-14 83.6 67 61.2
Gohir.A05G385400 Gossypium hirsutum HOM05D003405 ORTHO05D003920 1.6e-14 83.6 67 58.2
Gorai.012G034400 Gossypium raimondii HOM05D003405 ORTHO05D003920 1.6e-14 83.6 67 58.2
Lj9A413G54 Lonicera japonica HOM05D003405 ORTHO05D003920 1.6e-14 83.6 70 55.7
arahy.Tifrunner.gnm1.ann1.ZY1N1V Arachis hypogaea HOM05D003405 ORTHO05D003920 2.0e-14 83.2 67 58.2
Manes.01G139900 Manihot esculenta HOM05D003405 ORTHO05D003920 2.0e-14 83.2 67 59.7
Prupe.7G160700 Prunus persica HOM05D003405 ORTHO05D003920 2.7e-14 82.8 65 63.1
GSVIVG01018880001 Vitis vinifera HOM05D003405 ORTHO05D003920 2.7e-14 82.8 70 52.9
arahy.Tifrunner.gnm1.ann1.6C167N Arachis hypogaea HOM05D003405 ORTHO05D003920 3.5e-14 82.4 67 58.2
DCAR_023249 Daucus carota HOM05D003405 ORTHO05D003920 3.5e-14 82.4 66 59.1
TAR376G0111 Trochodendron aralioides HOM05D003405 ORTHO05D003920 3.5e-14 82.4 67 59.7
A01p03190 Brassica napus HOM05D003405 ORTHO05D003920 4.5e-14 82.0 58 67.2
CiPaw.07G051500 Carya illinoinensis HOM05D003405 ORTHO05D003920 4.5e-14 82.0 64 62.5
Dinv34758 Davidia involucrata HOM05D003405 ORTHO05D003920 4.5e-14 82.0 66 60.6
Solyc04g005330.3 Solanum lycopersicum HOM05D003405 ORTHO05D003920 4.5e-14 82.0 65 63.1
Sopen04g001310 Solanum pennellii HOM05D003405 ORTHO05D003920 4.5e-14 82.0 65 63.1
PGSC0003DMG400023568 Solanum tuberosum HOM05D003405 ORTHO05D003920 4.5e-14 82.0 65 63.1
arahy.Tifrunner.gnm1.ann1.LK2XUL Arachis hypogaea HOM05D003405 ORTHO05D003920 5.9e-14 81.6 71 53.5
arahy.Tifrunner.gnm1.ann1.LTR966 Arachis hypogaea HOM05D003405 ORTHO05D003920 5.9e-14 81.6 67 58.2
Manes.12G078200 Manihot esculenta HOM05D003405 ORTHO05D003920 5.9e-14 81.6 67 59.7
Gohir.D04G022600 Gossypium hirsutum HOM05D003405 ORTHO05D003920 7.7e-14 81.3 67 56.7
Hma1.2p1_0822F.1_g224510 Hydrangea macrophylla HOM05D003405 ORTHO05D003920 7.7e-14 81.3 70 55.7
Oeu028071.1 Olea europaea HOM05D003405 ORTHO05D003920 1.3e-13 80.5 70 55.7
BcaNung04868 Brassica carinata HOM05D003405 ORTHO05D003920 3.8e-13 79.0 65 61.5
Ca_20890_v3 Cicer arietinum L. HOM05D003405 ORTHO05D003920 3.8e-13 79.0 70 55.7
ECA240G1009 Erigeron canadensis HOM05D003405 ORTHO05D003920 3.8e-13 79.0 70 50.0
Cc04_g14810 Coffea canephora HOM05D003405 ORTHO05D003920 5.0e-13 78.6 70 54.3
arahy.Tifrunner.gnm1.ann1.Q3GRJ7 Arachis hypogaea HOM05D003405 ORTHO05D003920 1.1e-12 77.4 67 55.2
arahy.Tifrunner.gnm1.ann1.LKD0H4 Arachis hypogaea HOM05D003405 ORTHO05D003920 1.9e-12 76.6 71 54.9
SEGI_38491 Sequoiadendron giganteum HOM05D003405 ORTHO05D003920 1.9e-12 76.6 70 50.0
Rhsim05G0047900 Rhododendron simsii HOM05D003405 ORTHO05D003920 2.5e-12 76.3 92 45.7
RhsimUnG0142200 Rhododendron simsii HOM05D003405 ORTHO05D003920 2.5e-12 76.3 92 45.7
SalBow6G4756 Salvia bowleyana HOM05D003405 ORTHO05D003920 2.5e-12 76.3 70 51.4
Ciclev10004806m.g Citrus clementina HOM05D003405 ORTHO05D003920 4.2e-12 75.5 65 55.4
arahy.Tifrunner.gnm1.ann1.015YF3 Arachis hypogaea HOM05D003405 ORTHO05D003920 5.5e-12 75.1 67 55.2
C07p50090 Brassica napus HOM05D003405 ORTHO05D003920 5.5e-12 75.1 49 69.4
MBI16_g36844_MAGBIO Magnolia biondii HOM05D003405 ORTHO05D003920 7.2e-12 74.7 66 59.1
TWI73G0135 Tripterygium wilfordii HOM05D003405 ORTHO05D003920 9.5e-12 74.3 60 58.3
PGSC0003DMG402005959 Solanum tuberosum HOM05D003405 ORTHO05D003920 1.2e-11 73.9 87 49.4
BcaNung02686 Brassica carinata HOM05D003405 ORTHO05D003920 1.6e-11 73.6 48 68.8
BolC7t45512H Brassica oleracea HOM05D003405 ORTHO05D003920 2.1e-11 73.2 57 59.6
SGA_v2.0_scaffold81G26011 Striga asiatica HOM05D003405 ORTHO05D003920 3.6e-11 72.4 70 51.4
MBI02_g23715_MAGBIO Magnolia biondii HOM05D003405 ORTHO05D003920 8.0e-11 71.2 66 56.1
Aqoxy2G03536 Aquilegia oxysepala HOM05D003405 ORTHO05D003920 3.0e-10 69.3 66 51.5
ClCG06G014970 Citrullus lanatus HOM05D003405 ORTHO05D003920 7.5e-09 64.7 65 49.2
Thhalv10027098m.g Eutrema salsugineum HOM05D003405 ORTHO05D003920 1.3e-08 63.9 126 88.9
unitig_52.g17243 Utricularia gibba HOM05D003405 ORTHO05D003920 1.7e-08 63.5 108 36.1
vmacro02576 Vaccinium macrocarpon HOM05D003405 ORTHO05D003920 2.8e-08 62.8 65 49.2
Atru.chr1.1031 Acer truncatum HOM05D003405 ORTHO05D003920 3.7e-08 62.4 61 50.8
Atru.chr3.672 Acer truncatum HOM05D003405 ORTHO05D003920 3.7e-08 62.4 61 50.8
Atru.chr3.717 Acer truncatum HOM05D003405 ORTHO05D003920 3.7e-08 62.4 61 50.8
Sc09g0007320 Simmondsia chinensis HOM05D003405 ORTHO05D003920 1.1e-07 60.8 60 50.0
Pp3c4_20160 Physcomitrium patens HOM05D003405 ORTHO05D003920 1.4e-07 60.5 61 42.6
Mapoly0004s0245 Marchantia polymorpha HOM05D003405 ORTHO05D003920 9.2e-07 57.8 46 54.3
BraA03t14247Z Brassica rapa HOM05D003405 ORTHO05D003920 1.2e-06 57.4 42 61.9
PGSC0003DMG401005959 Solanum tuberosum HOM05D003405 ORTHO05D003920 2.7e-06 56.2 42 59.5
AT4G35370 Arabidopsis thaliana HOM05D003405 ORTHO05D003920 5.9e-06 55.1 32 78.1
BcaC06g30604 Brassica carinata HOM05D003405 ORTHO05D003920 5.9e-06 55.1 50 60.0


User provided reference genes

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