Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL3G51520 Arabidopsis lyrata HOM05D004708 ORTHO05D005573 1.5e-90 336.3 177 100.0
AT2G18250 Arabidopsis thaliana HOM05D004708 ORTHO05D005573 4.8e-86 321.2 177 94.9
Carub.0003s3243 Capsella rubella HOM05D004708 ORTHO05D005573 3.1e-85 318.5 177 94.4
CARHR108820 Cardamine hirsuta HOM05D004708 ORTHO05D005573 3.8e-83 311.6 173 93.1
Thhalv10022875m.g Eutrema salsugineum HOM05D004708 ORTHO05D005573 6.6e-83 310.8 177 91.0
Sp3g31670 Schrenkiella parvula HOM05D004708 ORTHO05D005573 1.8e-80 302.8 177 89.8
Aa31LG8G15760 Aethionema arabicum HOM05D004708 ORTHO05D005573 3.7e-78 295.0 177 85.9
BcaB07g31677 Brassica carinata HOM05D004708 ORTHO05D005573 1.6e-76 289.7 177 86.4
BcaC04g22917 Brassica carinata HOM05D004708 ORTHO05D005573 2.7e-76 288.9 177 86.4
BolC9t54282H Brassica oleracea HOM05D004708 ORTHO05D005573 5.9e-76 287.7 177 85.9
BcaB03g16615 Brassica carinata HOM05D004708 ORTHO05D005573 1.7e-75 286.2 174 88.5
BcaC06g36391 Brassica carinata HOM05D004708 ORTHO05D005573 2.3e-75 285.8 176 86.4
BolC7t40861H Brassica oleracea HOM05D004708 ORTHO05D005573 2.5e-74 282.3 176 85.8
Ciclev10026600m.g Citrus clementina HOM05D004708 ORTHO05D005573 4.3e-74 281.6 166 85.5
C07p04600 Brassica napus HOM05D004708 ORTHO05D005573 5.6e-74 281.2 176 85.2
A07p02450 Brassica napus HOM05D004708 ORTHO05D005573 9.5e-74 280.4 176 84.7
BraA07t28041Z Brassica rapa HOM05D004708 ORTHO05D005573 9.5e-74 280.4 176 84.7
Atru.chr3.607 Acer truncatum HOM05D004708 ORTHO05D005573 2.6e-71 272.3 158 85.4
COL.COLO4_34048 Corchorus olitorius HOM05D004708 ORTHO05D005573 6.4e-70 267.7 162 80.9
MD02G1144700 Malus domestica HOM05D004708 ORTHO05D005573 1.4e-69 266.5 174 79.3
QL06p046600 Quercus lobata HOM05D004708 ORTHO05D005573 2.4e-69 265.8 162 81.5
Gorai.008G067200 Gossypium raimondii HOM05D004708 ORTHO05D005573 9.2e-69 263.8 161 80.1
Thecc.03G010200 Theobroma cacao HOM05D004708 ORTHO05D005573 1.6e-68 263.1 172 77.3
Cpa.g.sc6.137 Carica papaya HOM05D004708 ORTHO05D005573 2.0e-68 262.7 177 75.7
HanXRQChr09g0261341 Helianthus annuus HOM05D004708 ORTHO05D005573 2.0e-68 262.7 164 80.5
COL.COLO4_22050 Corchorus olitorius HOM05D004708 ORTHO05D005573 7.8e-68 260.8 167 80.2
CiPaw.01G043700 Carya illinoinensis HOM05D004708 ORTHO05D005573 1.0e-67 260.4 162 80.2
MD15G1258400 Malus domestica HOM05D004708 ORTHO05D005573 1.7e-67 259.6 171 76.6
Duzib084G0089 Durio zibethinus HOM05D004708 ORTHO05D005573 2.3e-67 259.2 163 78.5
ECA232G2192 Erigeron canadensis HOM05D004708 ORTHO05D005573 3.9e-67 258.5 160 81.9
Nitab4.5_0000136g0310 Nicotiana tabacum HOM05D004708 ORTHO05D005573 3.9e-67 258.5 161 78.3
Thecc.01G032800 Theobroma cacao HOM05D004708 ORTHO05D005573 3.9e-67 258.5 165 78.2
Peaxi162Scf00008g03516 Petunia axillaris HOM05D004708 ORTHO05D005573 5.0e-67 258.1 162 78.4
THA.LOC104807464 Tarenaya hassleriana HOM05D004708 ORTHO05D005573 5.0e-67 258.1 196 68.9
Lsat_1_v5_gn_4_148240 Lactuca sativa HOM05D004708 ORTHO05D005573 6.6e-67 257.7 158 79.7
Manes.01G136850 Manihot esculenta HOM05D004708 ORTHO05D005573 6.6e-67 257.7 162 77.2
Prupe.7G156900 Prunus persica HOM05D004708 ORTHO05D005573 6.6e-67 257.7 174 77.0
Dinv13509 Davidia involucrata HOM05D004708 ORTHO05D005573 8.6e-67 257.3 161 77.6
TWI53G1618 Tripterygium wilfordii HOM05D004708 ORTHO05D005573 1.5e-66 256.5 159 78.6
Potri.005G121200 Populus trichocarpa HOM05D004708 ORTHO05D005573 2.5e-66 255.8 168 76.8
vmacro17822 Vaccinium macrocarpon HOM05D004708 ORTHO05D005573 2.5e-66 255.8 161 78.3
Hund16439 Selenicereus undatus HOM05D004708 ORTHO05D005573 3.3e-66 255.4 167 73.7
Sc16g0002660 Simmondsia chinensis HOM05D004708 ORTHO05D005573 3.3e-66 255.4 167 74.3
Actinidia19193 Actinidia chinensis HOM05D004708 ORTHO05D005573 4.3e-66 255.0 161 78.9
CSS0040556 Camellia sinensis var. sinensis HOM05D004708 ORTHO05D005573 4.3e-66 255.0 161 77.6
Gohir.A09G170800 Gossypium hirsutum HOM05D004708 ORTHO05D005573 4.3e-66 255.0 158 78.5
FvH4_1g13011 Fragaria vesca HOM05D004708 ORTHO05D005573 5.6e-66 254.6 173 72.8
Rhsim08G0118600 Rhododendron simsii HOM05D004708 ORTHO05D005573 5.6e-66 254.6 164 76.8
RcHm_v2.0_Chr2g0101171 Rosa chinensis HOM05D004708 ORTHO05D005573 7.3e-66 254.2 177 72.3
Cc07_g09720 Coffea canephora HOM05D004708 ORTHO05D005573 1.2e-65 253.4 161 78.9
Manes.02G095600 Manihot esculenta HOM05D004708 ORTHO05D005573 2.1e-65 252.7 171 74.9
Duzib264G1087 Durio zibethinus HOM05D004708 ORTHO05D005573 2.8e-65 252.3 162 76.5
GSVIVG01018936001 Vitis vinifera HOM05D004708 ORTHO05D005573 4.7e-65 251.5 157 77.7
CSS0030971 Camellia sinensis var. sinensis HOM05D004708 ORTHO05D005573 6.2e-65 251.1 158 78.5
Gorai.006G188300 Gossypium raimondii HOM05D004708 ORTHO05D005573 8.0e-65 250.8 171 72.5
MSTRG.23511 Avicennia marina HOM05D004708 ORTHO05D005573 1.1e-64 250.4 164 73.8
Hma1.2p1_0224F.1_g094553 Hydrangea macrophylla HOM05D004708 ORTHO05D005573 1.4e-64 250.0 170 75.9
Sopen02g013670 Solanum pennellii HOM05D004708 ORTHO05D005573 4.0e-64 248.4 167 74.9
AUR62004070 Chenopodium quinoa HOM05D004708 ORTHO05D005573 5.2e-64 248.1 164 74.4
Solyc02g062640.4 Solanum lycopersicum HOM05D004708 ORTHO05D005573 6.8e-64 247.7 167 74.9
DCAR_023857 Daucus carota HOM05D004708 ORTHO05D005573 8.9e-64 247.3 161 73.9
GSVIVG01025946001 Vitis vinifera HOM05D004708 ORTHO05D005573 8.9e-64 247.3 156 78.2
ClCG05G006010 Citrullus lanatus HOM05D000319 ORTHO05D000903 2.0e-63 246.1 177 71.8
CsaV3_3G014460 Cucumis sativus L. HOM05D004708 ORTHO05D005573 2.0e-63 246.1 178 72.5
Hund13990 Selenicereus undatus HOM05D004708 ORTHO05D005573 2.0e-63 246.1 169 70.4
PGSC0003DMG400015508 Solanum tuberosum HOM05D004708 ORTHO05D005573 2.0e-63 246.1 157 76.4
CAN.G111.48 Capsicum annuum HOM05D004708 ORTHO05D005573 2.6e-63 245.7 161 75.8
PGR119G0658 Punica granatum HOM05D004708 ORTHO05D005573 3.4e-63 245.4 174 74.1
Hma1.2p1_0789F.1_g218250 Hydrangea macrophylla HOM05D004708 ORTHO05D005573 4.4e-63 245.0 176 70.5
SalBow6G2211 Salvia bowleyana HOM05D004708 ORTHO05D005573 9.8e-63 243.8 166 72.9
Aqoxy5G01592 Aquilegia oxysepala HOM05D004708 ORTHO05D005573 4.9e-62 241.5 161 72.0
arahy.Tifrunner.gnm1.ann1.Y7U3HW Arachis hypogaea HOM05D004708 ORTHO05D005573 4.9e-62 241.5 171 72.5
arahy.Tifrunner.gnm1.ann1.V6C6W3 Arachis hypogaea HOM05D004708 ORTHO05D005573 6.4e-62 241.1 171 73.1
DCAR_032374 Daucus carota HOM05D004708 ORTHO05D005573 6.4e-62 241.1 156 73.1
AUR62007583 Chenopodium quinoa HOM05D004708 ORTHO05D005573 1.1e-61 240.4 164 72.6
MELO3C006648.2 Cucumis melo HOM05D004708 ORTHO05D005573 1.1e-61 240.4 177 70.6
Migut.H00962 Erythranthe guttata HOM05D004708 ORTHO05D005573 1.1e-61 240.4 167 73.7
Lsat_1_v5_gn_2_77221 Lactuca sativa HOM05D004708 ORTHO05D005573 1.4e-61 240.0 160 76.2
SGA_v2.0_scaffold258G45779 Striga asiatica HOM05D004708 ORTHO05D005573 1.4e-61 240.0 167 71.9
EL10Ac6g15543 Beta vulgaris HOM05D004708 ORTHO05D005573 1.9e-61 239.6 166 71.7
MD15G1258500 Malus domestica HOM05D004708 ORTHO05D005573 2.4e-61 239.2 164 75.0
arahy.Tifrunner.gnm1.ann1.CZ32YF Arachis hypogaea HOM05D004708 ORTHO05D005573 3.2e-61 238.8 171 71.9
CAN.G1645.15 Capsicum annuum HOM05D004708 ORTHO05D005573 3.2e-61 238.8 157 76.4
Lj2g0001027 Lotus japonicus HOM05D002605 ORTHO05D002842 7.1e-61 237.7 158 74.7
Phvul.002G032200 Phaseolus vulgaris HOM05D004708 ORTHO05D005573 9.2e-61 237.3 160 71.2
Ca_24863_v3 Cicer arietinum L. HOM05D004708 ORTHO05D005573 2.7e-60 235.7 158 74.7
Psat2g158360 Pisum sativum HOM05D004708 ORTHO05D005573 4.6e-60 235.0 159 73.0
Aqoxy3G01739 Aquilegia oxysepala HOM05D004708 ORTHO05D005573 7.8e-60 234.2 164 68.9
Glyma.01G173050 Glycine max HOM05D004708 ORTHO05D005573 1.0e-59 233.8 160 72.5
TPR.G2405 Trifolium pratense HOM05D004708 ORTHO05D005573 1.0e-59 233.8 171 69.6
Lalb_Chr05g0212721 Lupinus albus HOM05D004708 ORTHO05D005573 1.3e-59 233.4 162 74.1
Medtr5g020680 Medicago truncatula HOM05D004708 ORTHO05D005573 1.3e-59 233.4 159 73.0
BcaC04g22919 Brassica carinata HOM05D004708 ORTHO05D005573 3.9e-59 231.9 205 65.9
VMungo1215G3002 Vigna mungo HOM05D004708 ORTHO05D005573 3.9e-59 231.9 159 70.4
PSO764G0091 Papaver somniferum HOM05D004708 ORTHO05D005573 5.1e-59 231.5 158 72.2
Ca_21297_v3 Cicer arietinum L. HOM05D004708 ORTHO05D005573 1.1e-58 230.3 158 72.8
Medtr8g073890 Medicago truncatula HOM05D004708 ORTHO05D005573 2.5e-58 229.2 155 72.9
C09p13900 Brassica napus HOM05D004708 ORTHO05D005573 3.3e-58 228.8 179 73.7
unitig_21.g20250 Utricularia gibba HOM05D004708 ORTHO05D005573 4.3e-58 228.4 165 68.5
FAN19G0555 Fragaria x ananassa HOM05D004708 ORTHO05D005573 9.5e-58 227.3 210 59.0
Sabra05G0099900 Salix brachista HOM05D004708 ORTHO05D005573 9.5e-58 227.3 213 60.6
arahy.Tifrunner.gnm1.ann1.KFYL3R Arachis hypogaea HOM05D004708 ORTHO05D005573 1.2e-57 226.9 171 70.8
ECA238G4849 Erigeron canadensis HOM05D004708 ORTHO05D005573 3.6e-57 225.3 160 70.0
Os07g0179400 Oryza sativa ssp. japonica HOM05D004708 ORTHO05D005573 6.2e-57 224.6 159 67.9
ATR0796G251 Amborella trichopoda HOM05D004708 ORTHO05D005573 8.1e-57 224.2 178 64.0
Zm00001eb231510 Zea mays HOM05D004708 ORTHO05D005573 4.0e-56 221.9 168 64.9
PSO339G0290 Papaver somniferum HOM05D004708 ORTHO05D005573 1.2e-55 220.3 154 70.8
Gohir.A12G064100 Gossypium hirsutum HOM05D004708 ORTHO05D005573 1.5e-55 219.9 161 70.2
SEGI_37374 Sequoiadendron giganteum HOM05D004708 ORTHO05D005573 3.4e-55 218.8 169 65.7
CDE12G0116 Ceratophyllum demersum HOM05D004708 ORTHO05D005573 7.6e-55 217.6 152 69.1
FAN25G0668 Fragaria x ananassa HOM05D004708 ORTHO05D005573 2.2e-54 216.1 157 67.5
A09p11790 Brassica napus HOM05D004708 ORTHO05D005573 3.7e-54 215.3 126 88.9
TAR624G0473 Trochodendron aralioides HOM05D004708 ORTHO05D005573 4.9e-54 214.9 158 67.1
CARHR108850 Cardamine hirsuta HOM05D004708 ORTHO05D005573 6.4e-54 214.5 120 90.8
Hma1.2p1_1820F.1_g304110 Hydrangea macrophylla HOM05D004708 ORTHO05D005573 1.2e-52 210.3 138 77.5
CDE01G0816 Ceratophyllum demersum HOM05D004708 ORTHO05D005573 2.7e-52 209.1 152 67.1
FAN21G0333 Fragaria x ananassa HOM05D004708 ORTHO05D005573 1.3e-51 206.8 156 63.5
Glyma.02G276900 Glycine max HOM05D004708 ORTHO05D005573 6.6e-51 204.5 130 73.1
Gohir.D09G166500 Gossypium hirsutum HOM05D004708 ORTHO05D005573 6.6e-51 204.5 163 65.0
HPP92_014750 Vanilla planifolia HOM05D004708 ORTHO05D005573 4.3e-50 201.8 156 63.5
SMO357G0013 Selaginella moellendorffii HOM05D004708 ORTHO05D005573 4.7e-49 198.4 162 64.2
Dinv39998 Davidia involucrata HOM05D004708 ORTHO05D005573 2.4e-48 196.1 161 64.0
SMO318G0001 Selaginella moellendorffii HOM05D004708 ORTHO05D005573 6.8e-48 194.5 178 58.4
Pp3c18_16890 Physcomitrium patens HOM05D004708 ORTHO05D005573 1.2e-47 193.7 151 62.9
FvH4_3g26020 Fragaria vesca HOM05D004708 ORTHO05D005573 1.6e-44 183.3 128 66.4
Gohir.D12G064000 Gossypium hirsutum HOM05D004708 ORTHO05D005573 2.3e-43 179.5 104 80.8
Mapoly0065s0018 Marchantia polymorpha HOM05D004708 ORTHO05D005573 1.1e-42 177.2 158 60.1
Zm00001eb301320 Zea mays HOM05D004708 ORTHO05D005573 9.0e-40 167.5 155 55.5
Lj2A454G55 Lonicera japonica HOM05D004708 ORTHO05D005573 1.5e-39 166.8 137 62.0
Nitab4.5_0009165g0010 Nicotiana tabacum HOM05D000001 ORTHO05D013582 3.4e-39 165.6 103 81.6
BraA09t36827Z Brassica rapa HOM05D004708 ORTHO05D005573 4.4e-39 165.2 114 84.2
CSS0019358 Camellia sinensis var. sinensis HOM05D004708 ORTHO05D005573 2.2e-38 162.9 109 76.1
PSO384G2349 Papaver somniferum HOM05D004708 ORTHO05D005573 2.9e-38 162.5 158 56.3
PSO731G0046 Papaver somniferum HOM05D004708 ORTHO05D005573 2.4e-37 159.5 113 70.8
Peaxi162Scf00130g00618 Petunia axillaris HOM05D004708 ORTHO05D005573 9.3e-37 157.5 160 51.9
CBR_g4476 Chara braunii HOM05D003322 ORTHO05D004228 7.9e-36 154.5 159 49.1
Nn7g38122 Nelumbo nucifera HOM05D004708 ORTHO05D005573 2.3e-35 152.9 108 68.5
Os02g0134000 Oryza sativa ssp. japonica HOM05D004708 ORTHO05D005573 1.5e-34 150.2 115 68.7
FAN11G2897 Fragaria x ananassa HOM05D004708 ORTHO05D009899 3.3e-34 149.1 157 52.9
Actinidia33865 Actinidia chinensis HOM05D004708 ORTHO05D005573 2.1e-28 129.8 87 80.5
CAN.G2875.1 Capsicum annuum HOM05D004708 ORTHO05D005573 3.5e-28 129.0 83 80.7
FAN26G2067 Fragaria x ananassa HOM05D004708 ORTHO05D005573 6.0e-28 128.3 84 72.6
AagrBONN_evm.TU.Sc2ySwM_228.2017 Anthoceros agrestis HOM05D004708 ORTHO05D005573 8.7e-27 124.4 109 61.5
Pp3c18_18790 Physcomitrium patens HOM05D004708 ORTHO05D005573 3.1e-24 115.9 151 45.0
arahy.Tifrunner.gnm1.ann1.W5EA8A Arachis hypogaea HOM05D004708 ORTHO05D005573 3.4e-23 112.5 89 68.5
Cre13.g590550 Chlamydomonas reinhardtii HOM05D004708 ORTHO05D005573 3.2e-21 105.9 173 37.0
HanXRQChr17g0534461 Helianthus annuus HOM05D004708 ORTHO05D005573 2.3e-19 99.8 54 83.3
AagrBONN_evm.TU.Sc2ySwM_368.1168 Anthoceros agrestis HOM05D004708 ORTHO05D005573 1.9e-18 96.7 69 68.1
BcaC06g36392 Brassica carinata HOM05D000492 ORTHO05D005571 1.9e-18 96.7 65 84.6
C09p74780 Brassica napus HOM05D004708 ORTHO05D005573 1.9e-18 96.7 59 83.1
C09p74830 Brassica napus HOM05D004708 ORTHO05D005573 1.9e-18 96.7 59 83.1
CAN.G53.14 Capsicum annuum HOM05D004708 ORTHO05D005573 5.7e-18 95.1 58 75.9
SGA_v2.0_scaffold276G46612 Striga asiatica HOM05D004708 ORTHO05D005573 5.8e-15 85.1 111 50.5
Cfa027114 Carpinus fangiana HOM05D004708 ORTHO05D005573 1.4e-13 80.5 194 28.9
MCO08G231 Micromonas commoda HOM05D004708 ORTHO05D005573 1.9e-13 80.1 164 32.3
CAN.G53.15 Capsicum annuum HOM05D004708 ORTHO05D005573 7.2e-13 78.2 52 78.8
Oeu044133.1 Olea europaea HOM05D004708 ORTHO05D005573 1.0e-11 74.3 45 77.8
PRCOL_00004729 Prasinoderma coloniale HOM05D004708 ORTHO05D005573 1.3e-11 73.9 156 34.0
Actinidia12710 Actinidia chinensis HOM05D004708 ORTHO05D005573 9.0e-08 61.2 48 60.4


User provided reference genes

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